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github.com/astropy/halotools

Python package for studying large scale structure, cosmology, and galaxy evolution using N-body simulations and halo models
https://github.com/astropy/halotools

Fixed a few links in the docs

109c97476ec5b81eaf92b89df324ba36a37240da authored almost 10 years ago by Andrew Hearin <[email protected]>
Finished test suite and docstrings of all factories

6e8f8645da1c416c6996c191555d281ff0198301 authored almost 10 years ago by Andrew Hearin <[email protected]>
Finished docstrings and in-line comments for HodMockFactory

7592657ad521e97a71324d922a4b2410b618f33e authored almost 10 years ago by Andrew Hearin <[email protected]>
Abandoned idea of making doctests for MockFactory, which is impossible due to mutual imports

88e96f3f1027a8c2e821a2aa9c032dcf0181d37e authored almost 10 years ago by Andrew Hearin <[email protected]>
Finished API documentation of MockFactory

5573775a16d5127473498f150b515aac4b2c0039 authored almost 10 years ago by Andrew Hearin <[email protected]>
Added bundle_into_table method to mock factory.

6746a6050ed57f5dda7934d19cd7841b1b652c57 authored almost 10 years ago by Andrew Hearin <[email protected]>
Finished creating method to bind a mock realization to a model object

6ba4528eca6d744b649e0e627f02eb682818bd7b authored almost 10 years ago by Andrew Hearin <[email protected]>
Finished docstrings of HodModelFactory

e5872554e5aa5c22c8f63fde9dc1afcbcab80a2a authored almost 10 years ago by Andrew Hearin <[email protected]>
Almost done modifying docstrings

0b3aaaad5892a29c9007171453eef57046a3abed authored almost 10 years ago by Andrew Hearin <[email protected]>
Changed allocate_memory to be a public method. Working on docstrings and in-line comments of hod_factory

5a03c4d394039d19f0586759e96f087932617024 authored almost 10 years ago by Andrew Hearin <[email protected]>
Adding docstrings and in-line comments to hod factory

fec6b1f4ddcab4a779ef7a00f0e881481040ecd4 authored almost 10 years ago by Andrew Hearin <[email protected]>
Added new method restore_init_param_dict to ModelFactory, including a few tests

7e9e91491c652d018d89df81e4f55b616cdaeffb authored almost 10 years ago by Andrew Hearin <[email protected]>
Model blueprints now come bound with a mock factory

ecd02ad8711b0047d01de69dffffe3b30d57506c authored almost 10 years ago by Andrew Hearin <[email protected]>
Removed needless gitignore lines

501fff35f6165d64d2dbafbaee0197e21982734e authored almost 10 years ago by Andrew Hearin <[email protected]>
Removed print statements

5cc3b48a0c7b8b5b707fd0cb3853622a8da8437f authored almost 10 years ago by Andrew Hearin <[email protected]>
Minor changes to tutorial setup. Now basically complete

3f1dc47e5985acfa7a158eb2e08d42f1241d9b11 authored almost 10 years ago by Andrew Hearin <[email protected]>
Significant changes to tutorial conversion algorithm

f15b47f2d26586069c7d60542bd318a4cde8c7b6 authored almost 10 years ago by Andrew Hearin <[email protected]>
Minor docstring changes

9d7a52fd6c6d6fbd5a131ef031d6b73a9d355148 authored almost 10 years ago by Andrew Hearin <[email protected]>
Merge pull request #38 from aphearin/master

Nearly complete vanilla HOD

53bf4337982803e885d23decb3fb97194449feb1 authored almost 10 years ago by Andrew Hearin <[email protected]>
Almost done merging changes developing a complete, vanilla HOD

a71c36a139c4cfb3750e293484cdba2414f55a87 authored almost 10 years ago by Andrew Hearin <[email protected]>
Finished writing test suite for GalProfFactory

e21797808380ad549d528e0ba98f11c00bed646d authored almost 10 years ago by Andrew Hearin <[email protected]>
Added in mc_pos test for trivial profile

463b0cba4fcd2e80c944bce7c23fb652fb0e8403 authored almost 10 years ago by Andrew Hearin <[email protected]>
Finished docstrings and in-line comments for GalProfFactory

e35ac2bf60819776255a301589a587e3bb27a1e1 authored almost 10 years ago by Andrew Hearin <[email protected]>
Added more in-line comments

e0cf589fb2afc7047c141ecafe3119cb1d943666 authored almost 10 years ago by Andrew Hearin <[email protected]>
Added seed option to mc_radii, and many in-line comments

e6f7576459285bbb4111cb53be900630a5ac3040 authored almost 10 years ago by Andrew Hearin <[email protected]>
Docstring edits. Changed set_prof_param_table_dict from a private to a public method

a87c5c24d36e92b9be5d44d8376ecbf5981ba039 authored almost 10 years ago by Andrew Hearin <[email protected]>
Renamed GalProfModel to GalProfFactory

ce2e74e3dd0952bc61bf0933463583a3681b1e2c authored almost 10 years ago by Andrew Hearin <[email protected]>
minor docstring changes

97ac38102bc30db7dbd72cd54973b0c8e9ed061c authored almost 10 years ago by Andrew Hearin <[email protected]>
Minor changes to docstrings

9e161b6859b727c1be39d71bcc947a6b1f96ad87 authored almost 10 years ago by Andrew Hearin <[email protected]>
Finished adding doctests and expanding on documentation of halo_prof_components

3f7c301d0ef1fb8682fd90bcd4649d9672c82e3d authored almost 10 years ago by Andrew Hearin <[email protected]>
Adding doctests to halo_prof_components

cc262353b8051ba1a87651339141f447a7f40321 authored almost 10 years ago by Andrew Hearin <[email protected]>
Reformatted a few equations in NFW Profile docstrings

fd4227bb8650bfb794968e7f99b1f5e4385be987 authored almost 10 years ago by Andrew Hearin <[email protected]>
Minor changes to build_inv_cumu_lookup_table docstring

0416fb66eee59beccdf9e5048de27d04ac6cf09a authored almost 10 years ago by Andrew Hearin <[email protected]>
Docstring modifications to test_NFWProfile

39d4ead44ddbffa29fa71c86a09c99deb02804f8 authored almost 10 years ago by Andrew Hearin <[email protected]>
NFW Halo Profile component model is now extremely well tested

fa1a03fcc06611b7b8b286c137d31cc0cce9718c authored almost 10 years ago by Andrew Hearin <[email protected]>
Finished fine-tuning details of profile interpolation. Should now be accurate to ~0.1% accuracy at all radii and for all concentrations

32d8a26c91cbabb989d92bf407eb10c9a75e7ce1 authored almost 10 years ago by Andrew Hearin <[email protected]>
Changed conventions to use logarithmic spacing of radius array in interpolation tables

2aae55bb801a345284311b908d2db3240aaa98f6 authored almost 10 years ago by Andrew Hearin <[email protected]>
halo_prof_components is currently clean, and passes all tests. Will now begin to change code to interpolate in log-space

32993d80a1c7a9c7ceb8670fa33c7e6ec1e06cde authored almost 10 years ago by Andrew Hearin <[email protected]>
Still fleshing out halo_prof_components test

e240904539dfb43971ae390eb6ca87da078c0ad5 authored almost 10 years ago by Andrew Hearin <[email protected]>
Expanding test suite for halo_prof_components

098e9f7dfa36a7095ffa53fe7bc10291264ccbf8 authored almost 10 years ago by Andrew Hearin <[email protected]>
Docstring edits to halo_prof_components

7d24f4b30abfef7684f2a7bfdc52478281aa7d9c authored almost 10 years ago by Andrew Hearin <[email protected]>
Improvements to test_halo_prof_components

53afaca27236afd84277af927dcd3aa80cabcac5 authored almost 10 years ago by Andrew Hearin <[email protected]>
Changed naming convention from 'id'-->'haloid'

3877fd860142a41115f5cc49c02e43db13f4cc25 authored almost 10 years ago by Andrew Hearin <[email protected]>
Edits to docstring of FakeSim

610d49a066f6119f697eec211fcc11ac047f0591 authored almost 10 years ago by Andrew Hearin <[email protected]>
Finished functionality of FakeSim, including random particles and halos

49be79576ea50dff8f05f1ee9fbcfcadcc1c25e7 authored almost 10 years ago by Andrew Hearin <[email protected]>
Finished random halos method of FakeSim

e813a6b8af5fdb6fe53892d45a314c4904b7e06f authored almost 10 years ago by Andrew Hearin <[email protected]>
Adding class to generate fake simulation data for testing purposes

8e0c3e2614f12cc62ec3b5b31189bf589e471db0 authored almost 10 years ago by Andrew Hearin <[email protected]>
fixed import typo

22dd4e66aabfd40ef517ca05416ee094675a8d67 authored almost 10 years ago by Duncan Campbell <[email protected]>
removed aggregation files from master

e73c6c2137b5bb5d92b07bec554db3fb47339f00 authored almost 10 years ago by Duncan Campbell <[email protected]>
HodMockFactory now seems to build again, now (nominally) supporting an arbitrary number of halo profile parameters. Still basically untested

1e17b6b1aa02dac5ddd0fbeb6372ee3d758e616d authored almost 10 years ago by Andrew Hearin <[email protected]>
Re-factored build_inv_cumu_lookup_table so that this is now an inherited method of any HaloProfileModel subclass

8b45ef26977de3786dc0b40aa4430b0ccdf4ee5a authored almost 10 years ago by Andrew Hearin <[email protected]>
Fixed bookkeeping bug in build_halo_prof_lookup_tables method of HodMockFactory: halocatkey--> key. Not sure why this wasn't a bug before

6750dbc65920f7d98299136a5f64ea351953190c authored almost 10 years ago by Andrew Hearin <[email protected]>
Finished writing profile parameer method within HodModelFactory _set_primary_behaviors method

ad9746eb8ffaaa00b1c037f8efdd2b5fb7737a5a authored almost 10 years ago by Andrew Hearin <[email protected]>
Fixed bug in call to retrieve_relevant_haloprops: need to use * syntax when passing the returned result to a component model

0e3fc38aaaeec14c6f34e2d9659111caa263ff8b authored almost 10 years ago by Andrew Hearin <[email protected]>
Reconfiguring composite model profiles so that they do not contain unnecessary methods

2dae43b0673150b4a216cebdde0ef571be03aeea authored almost 10 years ago by Andrew Hearin <[email protected]>
Minor docstring change

3a929cf1a1ffb2ba9cd3f094bc090917eaf747de authored almost 10 years ago by Andrew Hearin <[email protected]>
Merge remote-tracking branch 'upstream/master'

ba4489d196750594a503fb74b4d3ccfd77f82393 authored almost 10 years ago by Duncan Campbell <[email protected]>
Merge branch 'aggregation_devel'

511f25c80f343fa2f85d45f3b21901f468e282b3 authored almost 10 years ago by Duncan Campbell <[email protected]>
added tests and removed built in aggregation functions

50532d10b12ab23022d746499b07a9c5c3460c1d authored almost 10 years ago by Duncan Campbell <[email protected]>
back to the old test file

9e9dfaa3d828b46d759d29ccc6af4aef73317370 authored almost 10 years ago by Duncan Campbell <[email protected]>
small changes

d151dd2f1c16ff0c8883ce348255f30222449181 authored almost 10 years ago by Duncan Campbell <[email protected]>
smnall changes

1fabb9aa39b9b2e415eae515eb43a8102eecd745 authored almost 10 years ago by Duncan Campbell <[email protected]>
Added docstring to _get_gal_prof_param

6e4156d689e049682e396be4eddaf288e285434b authored almost 10 years ago by Andrew Hearin <[email protected]>
Finished enormously complicated method _get_gal_prof_param and associated modification to _set_primary_behaviors

fa741352e81cddb250f2633fa731f609272f76fd authored almost 10 years ago by Andrew Hearin <[email protected]>
Added some docstrings

9ce3a1b82a7a1766946ab0ae3fe2d82388df7f1d authored almost 10 years ago by Andrew Hearin <[email protected]>
Docstring modification to HodModelFactory

7747e717a9d41ad075e60b875ceeea1c41b8f1e6 authored almost 10 years ago by Andrew Hearin <[email protected]>
_set_prof_param_table_dict is now automatically called by build_inv_cumu_lookup_table, eliminating the need for the constructor to explicitly call it

b23671222bd9359fb561470401f00a0e276341b0 authored almost 10 years ago by Andrew Hearin <[email protected]>
Deleted cumu_inv_func_table and replaced with cumu_inv_func_table_dict. Likewise for cumu_inv_param_table_dict

deacd0e9877e7bb03f320aeb7e9e9a86210df552 authored almost 10 years ago by Andrew Hearin <[email protected]>
docstring change

7c61264bb156772b184cc83c426dc1799ddd7142 authored almost 10 years ago by Andrew Hearin <[email protected]>
Drastically simplified hod factory build of lookup tables

21a200a9493be0966341aff8e1f62039fd2a43ad authored almost 10 years ago by Andrew Hearin <[email protected]>
Minor change to API of lookup table build

3707130588d4748e21d51f43f9e3a4af8a519ad0 authored almost 10 years ago by Andrew Hearin <[email protected]>
Touched up docstring of _set_prof_param_table_dict

84553ac8f6db8c6e1b2385ff7fbdce0cad67df71 authored almost 10 years ago by Andrew Hearin <[email protected]>
Started calling super classes using super() syntax

94877b4d3c4170ef0bbdcd65de3beee35d957bfb authored almost 10 years ago by Andrew Hearin <[email protected]>
Got rid of update_param_dict from Galaxy profile factory

c4055e9c51fe81b1168c230d486f16e803aed9ee authored almost 10 years ago by Andrew Hearin <[email protected]>
Added in some cross-links between docs sections

e4c1867a42184acdcebdf0602dba445f23ded800 authored almost 10 years ago by Andrew Hearin <[email protected]>
More development of getting started section of docs

6acf7e8da92e1872a2af10bc37fddd8028edca94 authored almost 10 years ago by Andrew Hearin <[email protected]>
Developing getting started subsection of docs

2173b35469855e920e2369aae17baff9eb2310e0 authored almost 10 years ago by Andrew Hearin <[email protected]>
Finished filling in more of installation section

6c02035ebb5007f8585acde1cf31fc86bca06f74 authored almost 10 years ago by Andrew Hearin <[email protected]>
Revisions to Overview

e03d40b62a284c1b51b086272e0c47cdf2009919 authored almost 10 years ago by Andrew Hearin <[email protected]>
Minor changes to docs overview

2c81b28e1b36c6907488ea3ffd1310c4d5ee3ef8 authored almost 10 years ago by Andrew Hearin <[email protected]>
Finished simplifying halo_prof_func_dict method of HodModelFactory

7451fd1575a234e51f40ca77e772bffc83d3fde4 authored almost 10 years ago by Andrew Hearin <[email protected]>
Major restructuring of how lookup tables are built by the composite model. Mild inefficiency due to innocuously redundant calculations has been traded in favor of huge bookkeeping simplifications.

48fe5fbe76f8f9124da4f2f52a7f402bc3aab584 authored almost 10 years ago by Andrew Hearin <[email protected]>
Propagating prof_param_table_dict changes all the way through HODFactory and MockFactory

2663f7718386f6c38f189aecaa4a5c12ccca9588 authored almost 10 years ago by Andrew Hearin <[email protected]>
Fixed bugs related to previous commit

37df3973df97daf4ceb912b4389fa27a23dd10da authored almost 10 years ago by Andrew Hearin <[email protected]>
Changed set_prof_param_table_dict to be a private method

fccc2e6592d52371ca0df88816616c8c234768f5 authored almost 10 years ago by Andrew Hearin <[email protected]>
Fixed bugs related to disappearance of gal_prof_param_keys attribute

52f2d601b191774047e7d1f6f98d6fddf1c83a16 authored almost 10 years ago by Andrew Hearin <[email protected]>
Changed _set_primary_behaviors of HodFactory to call gal_prof_func_dict without any funny business. Now the responsibility of navigating possibly biased galaxy profile parameter functions lies with the GalProfModel

0b34fdda6c634dd85f214e518f143c4a05fc1fcc authored almost 10 years ago by Andrew Hearin <[email protected]>
Erased all calls to set_halo_prof_func_dict, including in HodFactory. All have been replaced with getter methods

257feb08ccdbc1249290ac065660d760c569f3bd authored almost 10 years ago by Andrew Hearin <[email protected]>
Mostly done revamping halo_prof_func_dict and gal_prof_func_dict

to be determined by getter methods. Deleted the set_halo_prof_func_dict
methods in favor of the @...

976b3600eabad706c5461d3cbaf262719fcf6223 authored almost 10 years ago by Andrew Hearin <[email protected]>
Working on docstring of GalProfModel

4bda25f05550e086c65b3fa00f3372a802f312b9 authored almost 10 years ago by Andrew Hearin <[email protected]>
Starting to build tests for the galaxy profile factory

bea99c7f77f3fcd9c09b658e1303d35fc9ad7b51 authored almost 10 years ago by Andrew Hearin <[email protected]>
Merge pull request #33 from aphearin/master

Major changes to mock-making code and docs. Still unfinished, but getting close.

@duncandc -...

68dcafb3d319ad072b067c33a10d036349c90d92 authored almost 10 years ago by Andrew Hearin <[email protected]>
Major changes to mock-making code and docs. Still a work in progress.

Merging now to avoid having potentially overwhelming merge conflicts as
code continues to be aggr...

c8ff87756255a8bff880a26a65a72edfcd2fbed0 authored almost 10 years ago by Andrew Hearin <[email protected]>
Propagated docs style changes in astropy-helpers through the astropy-helpers sub-package

f0367c04d96569561ddc3b22ca1b3eaaec5b46c7 authored almost 10 years ago by Andrew Hearin <[email protected]>
Added possibly buggy code: passes test suite but docs don't build

7e76a4156fbaae645a4a1fae706b71d746112c38 authored almost 10 years ago by Andrew Hearin <[email protected]>
Finished SpatialBias docstring

de543a95b7491e3efe7db201c095579ce1d80945 authored almost 10 years ago by Andrew Hearin <[email protected]>
Minor changes to docstrings

3a5ad2302e6d1d8d550bb2b59f0d21eb7f93d78f authored almost 10 years ago by Andrew Hearin <[email protected]>
Starting to tighten the screws on SpatialBias class

b3ea51ab725c4abff0d211409a88c68363e55b84 authored almost 10 years ago by Andrew Hearin <[email protected]>
Finished first draft of docstring for NFWProfile intro

c11a23dfde6a94343c97361a6167ef1b255aced2 authored almost 10 years ago by Andrew Hearin <[email protected]>
Working on NFWProfile docstring

d64f5e27b9c6760be12ba91d736cbecdeeeb6361 authored almost 10 years ago by Andrew Hearin <[email protected]>