github.com/scipy/scipy commits | Ecosyste.ms: OpenCollective

Merge pull request #19123 from bmwiedemann/pyx

BLD: Avoid absolute pathnames in .pyx files

6a1871a7042e64b506239d595254160ee6c962cd authored over 1 year ago by Andrew Nelson <[email protected]>

Merge pull request #19124 from bmwiedemann/npz

BLD: Sort input file list

9ddd4b0515aa63db37a79507fa91c2edc74a2648 authored over 1 year ago by Andrew Nelson <[email protected]>

DOC: clarify input dimensions for `directed_hausdorff` method (#17757)

* Clarify input dimensions for directed_hausdorff method

The docstring stated that the method...

b1695803c20f63d30f9af34f5d069ba3dbf0ead8 authored over 1 year ago by Chris Rapson <[email protected]>

DOC: linalg: various doc improvements (#18706)

Co-authored-by: Jozsef Kutas <[email protected]>

fc7d038983300ec0eb4c8304d43b9218d75e93a8 authored over 1 year ago by Jozsef Kutas <[email protected]>

MAINT: Optimize file size of the SVG file in the "Short-Time Fourier Transform" section of `signal.rst`. (#18846)

5f6c967078eef391106011e1d274ee87b569eb1f authored over 1 year ago by Dietrich Brunn <[email protected]>

ENH: SVor 2d area perf (#18850)

* the 2D (circle-based) `SphericalVoronoi` arc area calculation
seemed a bit complex to me, so ...

08f2d843629e4e410251b0927b699526b461c8d1 authored over 1 year ago by Tyler Reddy <[email protected]>

MAINT: port minpack2.dcsrch from Fortran to Python, remove Fortran code (#19060)

* MAINT: minpack2 --> python

* MAINT: remove defunc else clause

* MAINT: redundant import
...

73ce9560ba1fc67db8a1db789e59279bb5a0ccf3 authored over 1 year ago by Andrew Nelson <[email protected]>

BLD: Sort input file list

so that scipy/special/tests/data/local.npz builds in a reproducible way
in spite of non-determin...

52cb46e3ff73058b0bd318faefdf35e3b91b3d66 authored over 1 year ago by Bernhard M. Wiedemann <[email protected]>

BLD: Avoid absolute pathnames in .pyx files

to allow for reproducible builds
even when (unneeded) .pyx files are installed and shipped in OS...

29657e2f9e3bac16166a8930e9ed49ebc7e952d4 authored over 1 year ago by Bernhard M. Wiedemann <[email protected]>

Merge pull request #19052 from h-vetinari/asv

BENCH: update asv, fail benchmark CI on errors, fix fallout

042385d14c2d3844e181bb2b8fe2db65c49ae722 authored over 1 year ago by h-vetinari <[email protected]>

ENH: sparse.linalg: add computing a selected number m of extreme eigenpairs in LaplacianNd (#19057)

* replace all ' with " _special_sparse_arrays.py

* add test_boundary_conditions_value_error i...

479269be2edba63015a209f96a741902cefb2d78 authored over 1 year ago by Andrew Knyazev <[email protected]>

Merge pull request #19115 from Sheila-nk/amend-docstrings

ENH, TST: Use explicit imports in docstring examples

e658548bd8406afd4135e81a8e7b71660e5974d5 authored over 1 year ago by Tyler Reddy <[email protected]>

chore: use double precision numbers in scipy/special/specfun.f (#19107)

23ed5fed8f9450446fc0aad0acb5002d4d7f84f7 authored over 1 year ago by Pranav <[email protected]>

ENH, TST: Use explicit imports in docstring examples

dce7636bf37e89f8cbeda9fbe1cd7d784327b4da authored over 1 year ago by Sheila-nk <[email protected]>

BUG: Fixes #19103 by adding back make_strictly_feasible to lsq trf.

PR #18896 removed make_strictly_feasible because it makes solutions
worse if they are close to t...

a51dfb24f35beaa77fbb70fc510ffa9fa7f0274a authored over 1 year ago by Hielke Walinga <[email protected]>

ENH: move {c, q}spline_1d to use sosfilt/lfilter (#18917)

Reviewed at https://github.com/scipy/scipy/pull/18917

f8036bc210d95365cd3a9ac44462ad0640cad9a1 authored over 1 year ago by Edgar Andrés Margffoy Tuay <[email protected]>

DOC:sparse: More properties and docs for sparse array classes (#18561)

* Replace sparse __getattr__ with properties

* cleanup warning

* Remove assignment to .T
...

a660202652deead0f3b4b688eb9fdcdf9f74066c authored over 1 year ago by Isaac Virshup <[email protected]>

Merge pull request #19113 from tylerjereddy/treddy_default_rng

MAINT, TST: default_rng few tests

43508032f0b721da28e54b64fe68fcbbc8f8cc4d authored over 1 year ago by Evgeni Burovski <[email protected]>

MAINT, TST: default_rng few tests

* I noticed two tests where we should now be
able to safely used `default_rng` while
reviewing s...

4489e9370666a177f2c8a862313fa64717423ad0 authored over 1 year ago by Tyler Reddy <[email protected]>

Merge pull request #19110 from mtsokol/remove-np-trapz-usage

MAINT: Remove usages of np.row_stack and np.in1d

b57542a289cf087a56daa56a16dd52b227624bdd authored over 1 year ago by Tyler Reddy <[email protected]>

MAINT: Remove usages of np.row_stack and np.in1d

1f2d28f21176cab2fc760ac30709d53e9e18feb2 authored over 1 year ago by Mateusz Sokół <[email protected]>

Merge pull request #19100 from mtsokol/vendor-trapz-implementation

MAINT: Move `trapezoid` implementation to SciPy

5bb7c0474e76a4bae7491abab3667193e80d04f3 authored over 1 year ago by Andrew Nelson <[email protected]>

BENCH: remove unused variables in benchmarks/stats.py

8cbd82a08400c7efca57c120928a22c3fee82b64 authored over 1 year ago by H. Vetinari <[email protected]>

BENCH: disable 3 failing benchmarks in ContinuousFitAnalyticalMLEOverride

0ac47bac9780df1825920978d4c4786a00e32b34 authored over 1 year ago by H. Vetinari <[email protected]>

BENCH: add studentized_range to slow_dists in benchmarks/stats.py

feafd8f9d7e0e2e5b39816edacc1d344f692b663 authored over 1 year ago by H. Vetinari <[email protected]>

MAINT: Switch to latest ASV, use mamba solver

Should be faster too.

* Use --quick for asv

This ensures the same behaviour as pre 0.4 version...

c4b7257040835d364040a17140825764a792a136 authored over 1 year ago by Rohit Goswami <[email protected]>

BENCH: disable benchmarks in optimize_milp that are timing out

c626f34ed662ec82ef49661057beeb9b73aa3f5a authored over 1 year ago by H. Vetinari <[email protected]>

BENCH: remove obsolete wminkowski metric from benchmarks

5a104836f8c73bd602dd1793f5cd22c6366e6ca0 authored over 1 year ago by H. Vetinari <[email protected]>

BENCH: disable failing propack variant of BenchSVDS

c744b0a34c32bc0e8d0ca5faf1528ff469e76396 authored over 1 year ago by H. Vetinari <[email protected]>

MAINT: fix the CT subclass benchmark (#19104)

Derive the benchmark from the CloughTocher docstring example, make
sure it runs without errors.

2417804c03ffb7ffae9407588155d4f3e41fb586 authored over 1 year ago by Evgeni Burovski <[email protected]>

MAINT: integrate.trapezoid, replace assert_almost_equal

d7f720d54d00ac8a8918f498473922250b2c9adb authored over 1 year ago by Andrew Nelson <[email protected]>

TST: _lib._util._lazywhere: strengthen test

83022108d3f7a528a1efc6384031d5ffcc2fd054 authored over 1 year ago by Matt Haberland <[email protected]>

Merge remote-tracking branch 'upstream/main' into _lazywhere

db5af03242c68f6489db071047446506ca8a3577 authored over 1 year ago by Matt Haberland <[email protected]>

TST: use Hypothesis for property-based tests (#18927)

Co-authored-by: Zac Hatfield-Dodds <[email protected]>

63d3d845dd1df071b1fde0882002e202a7e2e849 authored over 1 year ago by Matt Haberland <[email protected]>

MAINT: Vendor trapz implementation

9a979864bdf203559d421e40a745b6eee6b025b1 authored over 1 year ago by Mateusz Sokół <[email protected]>

Update scipy/optimize/tests/test_optimize.py

Adress comment on testing

Co-authored-by: Daniel Schmitz <[email protected]...

3aa44b176d80d9bb95f67971984282e20ac8c117 authored over 1 year ago by Paul Estano <[email protected]>

ENH: optimize: #19095 Rm tol to issymmetric

Removing `rtol` and `atol` from symmetric check in `_check_positive_definite`.

564e767a8397fbef5116003c5248d90e842db4ea authored over 1 year ago by Paul Estano <[email protected]>

ENH: optimize: Addressing comments

Address comments to #19095. See #17864.

36fa82d385022196cec4ef9359110583e25d5cf9 authored over 1 year ago by Paul Estano <[email protected]>

Merge pull request #19094 from j-bowhay/19081-follow-up

BUG: optimize: update incorrect c1 value

da82ac849a4ccade2d954a0998067e6aa706dd70 authored over 1 year ago by Andrew Nelson <[email protected]>

DOC: add reference to Nocedal for source of condition on c1 and c2

[skip actions] [skip cirrus]

28741756f39ba1315afc87312745a439f1075dd5 authored over 1 year ago by Jake Bowhay <[email protected]>

ENH: optimize: add hess inv estimate in bfgs

Closes scipy#17864.

Add inverse Hessian estimate parameter `hk_init`
in `_minimize_bfgs`.
`hk_i...

0af19968bbcf9e186af1c7135fc108699e873a6d authored over 1 year ago by Paul Estano <[email protected]>

DOC: document condition on c1 and c2

91f2cd3e9762c5aa6b41fb3193d682dcaec7eb69 authored over 1 year ago by Jake Bowhay <[email protected]>

MAINT: update incorrect c1

facafd49c2b99800bca52f9c6e17d31e6f35627c authored over 1 year ago by Jake Bowhay <[email protected]>

MAINT: stats.zscore: fix bug when 0th element is masked (#19093)

9d7b6f9189d74767ed4e07cb3b7d4ff75012d054 authored over 1 year ago by Matt Haberland <[email protected]>

Merge pull request #19081 from j-bowhay/gh-19075

ENH: optimize: c1 and c2 of scalar_search_wolfe to cg and newton-cg

deb38cdea12d9c05563726de0130554ad6bbc085 authored over 1 year ago by Andrew Nelson <[email protected]>

fix typo in c1 and change location of check

bc6b79fd042fe40c4af2211154fc3b016fb4b6dc authored over 1 year ago by Jake Bowhay <[email protected]>

MAINT: optimize.root_scalar: handle args when method is newton and fprime is not provided (#19091)

6d7daabd759719a075b5a1f35a86da443ee4e0b6 authored over 1 year ago by Matt Haberland <[email protected]>

Merge pull request #19087 from agoscinski/add-doc-bench-ccache

DOC: add info about usage of ccache for benchmarks

e837f21f753e376514520b82053d8f49f290f046 authored over 1 year ago by Tyler Reddy <[email protected]>

DOC: PR 19087 revisions

* remove a spurious link found in code review

[skip ci] [skip cirrus]

06fb4ec5b12f734bd5a977e8d27fee73587d2f52 authored over 1 year ago by Tyler Reddy <[email protected]>

DOC: add comment on args in solve_ivp (#18876) (#19089)

* DOC: add comment on args in solve_ivp (#18876)

[skip ci]

* DOC: make reference to args m...

f60c5001f3a8f8c7137376eda54252270ad75d3a authored over 1 year ago by Gert-Ludwig Ingold <[email protected]>

DOC: add missing fullstop

[skip actions] [skip cirrus]

5dc332f2934cab8bc6de0ae2d50b1fe96d006f13 authored over 1 year ago by Jake Bowhay <[email protected]>

DOC: add missing fullstops

[skip actions] [skip cirrus]

cdce31e6ef5db46123a1a16482b3beaac326ba03 authored over 1 year ago by Jake Bowhay <[email protected]>

DOC: address review comments

[skip actions] [skip cirrus]

1739ac158f5438bded9eb6a6de0bed1dfe385316 authored over 1 year ago by Jake Bowhay <[email protected]>

Merge pull request #19086 from rgommers/pyproject-toml-tweaks

BLD: tweaks to build dependencies and 3.12 classifier in pyproject.toml

34366e000b3f37732c4254476e0d6df1857f1f70 authored over 1 year ago by Tyler Reddy <[email protected]>

BLD: ensure all metadata is static, and update versions of dependencies

- put a lower bound on numpy version for Python 3.12; that pre-release
is the first version th...

34672e9a169bb7ff50fc8d4a000702f7f610cdbe authored over 1 year ago by Ralf Gommers <[email protected]>

ENH: Reflect changes from numpy namespace refactor part 3 (#19078)

f9293b2e41cf7bc466077e78251d2ebfe8df7087 authored over 1 year ago by Mateusz Sokół <[email protected]>

DOC: add info about usage of ccache for benchmarks

[skip actions] [skip travis] [skip azp] [skip cirrus]
Closes gh-11516

1261212ce072b093d210defbe666564c06b74cf1 authored over 1 year ago by Alexander Goscinski <[email protected]>

BLD: add Python 3.12 classifier in pyproject.toml

Closes gh-19082

d24bd5b1d64c11b470403053594943d50ec2bd91 authored over 1 year ago by Ralf Gommers <[email protected]>

MAINT: forward port 1.11.2 relnotes (#19083)

forward port `1.11.2` relnotes + version switcher adjustment

[skip ci]

58d9ac661747c4145238b62d690f3eb32c13bc16 authored over 1 year ago by Tyler Reddy <[email protected]>

ENH: optimize: c1 and c2 of scalar_search_wolfe to cg and newton-cg

5e012db3e885f98b4b854e872e1c5a800235287e authored over 1 year ago by Jake Bowhay <[email protected]>

ENH: Expose c1 and c2 of scalar_search_wolfe to fmin_bfgs (#18977)

* ENH: Expose c1 and c2 of optimize._linesearch to fmin_bfgs in optimize._optimize

* ENH: Exp...

7315b9fc434e5a8a188ab107cf949c12e1465276 authored over 1 year ago by TLeitzbach <[email protected]>

Merge pull request #19055 from lucascolley/cluster_copy

MAINT: use `copy` utility from #19014 in `cluster`

42f6916eb2d64e5d19b3a76c44e2ae67959b10e5 authored over 1 year ago by Andrew Nelson <[email protected]>

Merge pull request #18956 from ellieLitwack/trust_constr_bounds

BUG: trust-constr Bounds exclusive

fc092f8be0d811e57961aa6a8ddaa6e90047ae33 authored over 1 year ago by Andrew Nelson <[email protected]>

MAINT: assert is not a function

176e4ebdf93da01fdb34f20fed5f742d0630f8f4 authored over 1 year ago by Andrew Nelson <[email protected]>

Merge pull request #19074 from resting-dove/add-test

TST: add regression test for sqrtm unexpectedly converting to complex

aee0d1945caedbf3f292af8ec5facfe9cdcf751d authored over 1 year ago by Tyler Reddy <[email protected]>

BUG: sparse.csgraph: Support int64 indices in traversal.pyx (#18913)

Closes gh-18716

Co-authored-by: Julien Jerphanion <[email protected]>

557228f3fb4d373f3b96fa38f23f51a3debfdb54 authored over 1 year ago by CJ Carey <[email protected]>

Merge pull request #19076 from andyfaff/simpson

MAINT: should not be using np.float64() on arrays

06fe8292df76653ef9eefd5353cc462a109ab5df authored over 1 year ago by Matt Haberland <[email protected]>

MAINT: should not be using np.float64() on arrays

e4a5650a975e36a02c21f8900f8b7e46b5ad4429 authored over 1 year ago by Andrew Nelson <[email protected]>

DEP: linalg: improve deprecation of private modules named without underscore prefix (#19035)

840a9ed0f41f84ce0bbf8c104bfbbbe93781cbdd authored over 1 year ago by Jake Bowhay <[email protected]>

TST: add regression test for sqrtm unexpectedly converting to complex

See #12247

1322f87542243377cb147b47e4a6bb04bd56d8b5 authored over 1 year ago by resting-dove <[email protected]>

DOC: remove reference to no longer imported numpy funcs (#19073)

[skip ci]

8b473b950fde84f06201ff610cadecd5859f019b authored over 1 year ago by Jake Bowhay <[email protected]>

Merge pull request #19067 from rgommers/remove-numpy-imports

DEP: remove all deprecated `scipy.<numpy-func>` objects

a779101423c50f3af4c4e81a4b87762d59475d9e authored over 1 year ago by Tyler Reddy <[email protected]>

DEP: odr: improved deprecation of private modules (#19070)

2c1edd2194355e5ce6ce931eb819adaf1a8c96ed authored over 1 year ago by Charles Harris <[email protected]>

BENCH: fix benchmark that imported numpy functions from scipy

[skip actions] [skip cirrus]

e5ecd6c6d8cf9548cbca4130d6c6826d2d528f04 authored over 1 year ago by Ralf Gommers <[email protected]>

DEP: remove all deprecated `scipy.<numpy-func>` objects

As evidenced by gh-19065, changes to the contents of numpy's main
namespace or `__all__` dict ha...

bb52abdf3105aa30845735d54ccf40fd4c7ef739 authored over 1 year ago by Ralf Gommers <[email protected]>

Merge pull request #19062 from lysnikolaou/superlu-complex

BLD: Replace complex occurences with singlecomplex in SuperLU

[skip ci]

c20c60f2a149c314611b02aff5652ad5665132b4 authored over 1 year ago by Ralf Gommers <[email protected]>

BENCH: optimize: Update dfovec.py case 20 for zero indexing (#19066)

49e1092eab856520fb1f3ef9e53cf0b7d725e473 authored over 1 year ago by Jeffrey Larson <[email protected]>

MAINT: fix up issue caused by deprecated entries in `np.__all__`

Closes gh-19065

b251b624876b97f31e3ee79a22cdba84e5a37953 authored over 1 year ago by Ralf Gommers <[email protected]>

BLD: Replace complex occurences with singlecomplex in SuperLU

- Replace all occurences of complex with singlecomplex
- Add a second patch file for the complex...

ab8e93bd090756180d675faed248a1bdeff0ec9b authored over 1 year ago by Lysandros Nikolaou <[email protected]>

Merge pull request #19034 from tylerjereddy/treddy_numpy_dep_cleanup

MAINT: NumPy 1.25.x deprecations

* fix the 9 remaining SciPy "silent" deprecation warnings fr...

d4efe3665e69a6a46ab591ac3da359d8d98e7d10 authored over 1 year ago by Tyler Reddy <[email protected]>

DOC: spell NaN -> nan (#19061)

[skip ci]

881b9fe85eae39015693ea3c83d406c252eebcab authored over 1 year ago by Evgeni Burovski <[email protected]>

Merge pull request #19064 from rgommers/fix-truncexpon-test

TST: bump tolerance of `TestTruncexpon.test_is_isf` a little

542361a5849d38eb2fd029112d5ef5709fb8e700 authored over 1 year ago by Matt Haberland <[email protected]>

TST: bump tolerance of `TestTruncexpon.test_is_isf` a little

This is failing for me locally with latest NumPy main, which has
overhauled SIMD support. The te...

9f78cbe51af9fe76ca3c044dd7fab4a3f0f55bd9 authored over 1 year ago by Ralf Gommers <[email protected]>

MAINT: fixup dep warning

* fix the final `9` remaining silent NumPy
deprecation warnings per the discussion
in gh-19034

...

cf442396bb6e34f53140ad6428e37bd1d3d9e475 authored over 1 year ago by Tyler Reddy <[email protected]>

ENH: Add derivatives for BarycentricInterpolator (#18197)

Implement derivatives for BarycentricInterpolator according to Berrut and Trefethen (cf https://...

5ebc7afe8949d097728ee5b93271a481f2fcb881 authored over 1 year ago by jcwhitehead <[email protected]>

MAINT: lint: use `isinstance` in `cluster/hierarchy.py`

0ddb4072acb2ac3cd23b5ce960ecb4d893bda172 authored over 1 year ago by Lucas Colley <[email protected]>

MAINT: ensure cobyla objective returns scalar (#19054)

* MAINT: ensure cobyla objective returns scalar

* LINT

f34aa0873dbd9ed15525869c8e8e320635d1e919 authored over 1 year ago by Andrew Nelson <[email protected]>

MAINT: use `copy` utility from #19014 in `cluster`

1510f7dea0bc80c912b978b66347b492a2925964 authored over 1 year ago by Lucas Colley <[email protected]>

ENH:sparse.linalg: Add LaplacianNd class to special sparse arrays (#18963)

* ENH:sparse:Add special sparse arrays to sparse.linalg

[skip azp] [skip actions] [skip cirru...

849c27deacc604e26f9b0fbe749d9aad718c8e83 authored over 1 year ago by Andrew Knyazev <[email protected]>

Merge pull request #19053 from andyfaff/depends

CI: cirrus mods

9c63f2d65c6b00156e1fa8145e1e5137e372ef99 authored over 1 year ago by Andrew Nelson <[email protected]>

Merge pull request #19050 from andyfaff/nightly

CI/BLD: make nightly wheels daily closes #19048

c4b6823b61ce6a33041ded7a3f08561b72b31d6d authored over 1 year ago by Andrew Nelson <[email protected]>

CI: only run cirrus general CI if PR

ba112c7219f5c4937d49235581fdb1af581975ce authored over 1 year ago by Andrew Nelson <[email protected]>

CI: only run cirrus general CI if PR

95f6cce1a74bab9b6834259835329620de3f1314 authored over 1 year ago by Andrew Nelson <[email protected]>

CI: cirrus, only run mac if linux completes

16289afc0aacfb50800d90e728a82a7156dff6a6 authored over 1 year ago by Andrew Nelson <[email protected]>

ENH: sparse.linalg: Implement matrix_power() (#18544)

* add matrix_power() using MatrixPowerOperator()

* remove unused imports in _matrix.py

* m...

1ef84bc416c3d681294e48842800c5c2a6476669 authored over 1 year ago by Levi John Wolf <[email protected]>

ENH: change sparse dok from subclass of dict to have attribute dict (#18929)

* change dok from subclass of dict to have attribute dict

* mutate newdok._dict directly

*...

9bd42fd5b0a7d1623016750ac4f511ff065889e6 authored over 1 year ago by Dan Schult <[email protected]>

CI/BLD: make nightly wheels daily

5904196e79d64fc496d11dce76ee5f3688418eb1 authored over 1 year ago by Andrew Nelson <[email protected]>

Merge pull request #17918 from ElBarso/test-scipy

BUG: Fix error in linalg/_matfuncs_sqrtm.py

3a9dc91cdc4957a9b4ce7338111638430287b412 authored over 1 year ago by Tyler Reddy <[email protected]>

BUG: interpolate: fix spalde with len(c) < len(t) (#19004)

b7a9ae281cb6c3230beb78675a6e4ad0a1789d2c authored over 1 year ago by Evgeni Burovski <[email protected]>

Merge pull request #19047 from R-Yash/fix_19008

Corrected a grammatical error in the docstring of class DOP853

1fe3f40c661fa4b84682ed58e63fcfe132e9064a authored over 1 year ago by Robert Kern <[email protected]>