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github.com/scipy/scipy

SciPy library main repository
https://github.com/scipy/scipy

DOC: modify docstring

4d46a4bc81e62ac7eeff0b2f19b3703d4372d3c1 authored over 1 year ago by Andrew Nelson <[email protected]>
BLD: start building wheels against numpy2.0 [wheel build]

8f482dcda6d663175543620844a6143ef7cf83b6 authored over 1 year ago by Andrew Nelson <[email protected]>
MAINT: move strategy_func to overload strategy

86b59775cf54dab57ab785d025b17781402f0a6d authored over 1 year ago by Andrew Nelson <[email protected]>
Merge pull request #17633 from fuglede/mwfbm-infeasibility

BUG: add infeasibility checks to min_weight_full_bipartite_matching

df839f72dc27e3874a8f2e25ca37e1f89b7f0f97 authored over 1 year ago by Tyler Reddy <[email protected]>
MAINT: polish and fix differential_evolution strategy_func

61f70773c3e4e3630e2a67a997dcd5088517fac7 authored over 1 year ago by Andrew Nelson <[email protected]>
ENH: Implemented custom mutation functions in DifferentialEvolution.

3764c2a9ad9a758e0fcbd26cf9bd34def577d5ab authored over 1 year ago by Karen Róbertsdóttir <[email protected]>
Merge pull request #19191 from rgommers/update-mesonpython

BLD: update minimum versions of meson-python and pythran

9d5d4f86bd50e11ee6e593758ab06f9b6f7cf021 authored over 1 year ago by Tyler Reddy <[email protected]>
Merge pull request #19194 from lucascolley/xp-test-fix

BUG/TST: fix `test_array_api` for `cupy`

1fce6d543dd761da005c601b824a57f812113b35 authored over 1 year ago by Tyler Reddy <[email protected]>
BUG/TST: fix `test_array_api` for `cupy`

[skip cirrus] [skip circle]

Co-authored-by: Tyler Reddy <[email protected]>

9b84151b32b59f47c1db5ebf99f1a235bd150a69 authored over 1 year ago by Lucas Colley <[email protected]>
DOC: sparse.linalg: Enhance lobpcg documentation with updated examples (#19146)

* Resolve #18881: Enhance lobpcg documentation with updated examples

- Added examples utilizi...

9f7549abcc61f5dc72ca000cef7bc43066c74527 authored over 1 year ago by Anudeep Adiraju <[email protected]>
Merge pull request #19206 from tylerjereddy/treddy_issue_19190

9d616dcd643cab4f0378e1d1eeae548f4616b7a7 authored over 1 year ago by Pamphile Roy <[email protected]>
TST, MAINT: skip fix for arr API tests

* Fixes #19190

* the module-level skipping described in the above issue
was causing spurious sk...

9391901d8a8e6cb1529b5002dfa6f91e93082e35 authored over 1 year ago by Tyler Reddy <[email protected]>
DOC: remove old mention to Python 2. (#19202)

4556eb3ffae8185b2b87b50aca5169900799f66d authored over 1 year ago by Matthias Bussonnier <[email protected]>
TST: fix sparse constructor test with large memory footprint (#19184)

* fix test with large memory footprint, `test_concatenate_int32_overflow`

709f0d3bd416e4407a580ebd870d9ddf44692b74 authored over 1 year ago by Dan Schult <[email protected]>
DOC: Fix _nan_allsame example prompt. (#19203)

without the leading prompt this is interpreted as the result the
previous line should produce.

b4260533dedf97f538d8f6e99592ea56b2ef4d4d authored over 1 year ago by Matthias Bussonnier <[email protected]>
DOC: missing backtick in mannwhitneyu (#19204)

[skip ci]

4141de5bfa4759fe01a6a319b1cb30c93ab445bf authored over 1 year ago by Matthias Bussonnier <[email protected]>
DOC: optimize.minimize_scalar: note limitations and suggest alternatives (#19198)

* DOC: optimize.minimize_scalar: note limitations and suggest alternatives

[skip actions] [sk...

4a9bf0eb6b299eeafe8156e2eb91c4741fae1d9a authored over 1 year ago by Matt Haberland <[email protected]>
Merge pull request #19201 from Carreau/btkc

DOC: missing backticks

db1165aed2209ba28c0ffc347c6200bbe7ec26ef authored over 1 year ago by Tyler Reddy <[email protected]>
DOC: missing backticks

All in title, this create parsing errors/incorrect docs.

[skip ci]

9932d76e82f647e377bf3ac0d33f5929e0a9f626 authored over 1 year ago by Matthias Bussonnier <[email protected]>
TST: fix `TestODR.test_implicit` test failure with tolerance bump (#19200)

This was failing on macOS x86-64 in CI with:
```
E Arrays are not almost equal to 6 decimal...

986f248024afb0dc3646d43b963dfe43d9e3cdbb authored over 1 year ago by Ralf Gommers <[email protected]>
BLD: update minimum versions of meson-python and pythran

Closes gh-19150
Closes gh-19158

0765b9d7a29a18e3602a232bcd1df103a781c807 authored over 1 year ago by Ralf Gommers <[email protected]>
Merge pull request #18930 from mdhaber/_lazywhere

5495f4c3debc81794a2f15ae312dfc4509386b7f authored over 1 year ago by Pamphile Roy <[email protected]>
Merge pull request #19187 from lucascolley/array-likes

BUG: accept `np`-coercible array-likes with array API flag set

a26a96483f31eda32d0fe79197b1281bbe14f944 authored over 1 year ago by Tyler Reddy <[email protected]>
TST: test that inputs coerced to objects are denied

[skip cirrus] [skip circle]

18d1914c4b807861ea30e49e9cdbaee2da765e60 authored over 1 year ago by Lucas Colley <[email protected]>
ENH: array agnostic `cov`, used in `cluster` (#19051)

[skip azp]

31ebea4a154818922c5d3a42f2b866dc11ab4a11 authored over 1 year ago by Lucas Colley <[email protected]>
fix by using `arrays[i]`

[skip cirrus] [skip circle]

f0227d22003e0dfdc78f657e6a73f1aff8c1b40b authored over 1 year ago by Lucas Colley <[email protected]>
Merge pull request #19192 from rgommers/fix-test-issues

TST: test tolerance bumps to fix reported failures

0d7660aadf8e4adff56734227b1a1beb5190e092 authored over 1 year ago by Tyler Reddy <[email protected]>
TST: test that array-likes are accepted with array API flag

[skip cirrus] [skip circle]

a60e89ff23def37b7f888bdfc9378f967e7e5d70 authored over 1 year ago by Lucas Colley <[email protected]>
MAINT: use `arrays` not `*arrays` in `compliance_scipy`

[skip cirrus] [skip circle]

a0039c41926ef8592f72baba4fb6b647fb32ee4b authored over 1 year ago by Lucas Colley <[email protected]>
ENH: optimize: add method attribute to result object from root_scalar and root (#19128)

ENH: optimize: add method attribute to result object from root_scalar and root

951fe4ffd1824eb00665ce27d37a9d9a94f8b82c authored over 1 year ago by Jake Bowhay <[email protected]>
DOC: stats.Covariance: fixed typo (#19195)

DOC: stats.Covariance: fixed typo

0f70603da72483dc960b3974dcb112967108d212 authored over 1 year ago by Aadya Chinubhai <[email protected]>
TST: test tolerance bumps to fix reported failures

Closes gh-19117

The `test_sygst` one was reported in gh-19153.

a4fba82078d2e95005343150d821ccd33cb5de20 authored over 1 year ago by Ralf Gommers <[email protected]>
BUG: Support sparse arrays in scipy.sparse.csgraph.laplacian (#19156)

* BUG: Support sparse arrays in scipy.sparse.csgraph.laplacian

* TST: Added unit test for lapla...

838a4e0df5b3f18267e5daa1311a842c3f6ef0b7 authored over 1 year ago by Bharat Raghunathan <[email protected]>
ENH: Extend Rotation.align_vectors() to allow an infinite weight, as well as minimum-distance rotations for single vectors (#17542)

* ENH: Extend Rotation.align_vectors() to allow single-vector alignment and infinite weights

...

6d6d35277e3a95c37469d2510d7b6723d78a373b authored over 1 year ago by Scott Shambaugh <[email protected]>
TST: remove array API test for denial of array-likes

[skip cirrus] [skip circle]

4eda1b04d18c9eda9326711482fe5c8f080df9bf authored over 1 year ago by Lucas Colley <[email protected]>
DOC: signal: Added example for tf2zpk function (#19179)

* [skip actions] [skip cirrus]

* Update scipy/signal/_filter_design.py

Co-authored-by: Jak...

fbe5f7f6f455fcf79c1fa526e60c8a9d4f48bb30 authored over 1 year ago by othmane tamri <[email protected]>
BUG: accept `np`-coercible array-likes with array API flag set

b9c3d3e2b8a7f87e3654320ea505c22956bb046e authored over 1 year ago by lucascolley <[email protected]>
MAINT: Import fromarrays from rec (#19183)

[skip ci]

384bb38abffda92e245d0056dd549967c4175599 authored over 1 year ago by Mateusz Sokół <[email protected]>
TST: _lib._util._lazywhere: update tests to use _array_api assertion

3a18c4d87a3c7031df083e745418faafc3874655 authored over 1 year ago by Matt Haberland <[email protected]>
Merge remote-tracking branch 'upstream/main' into _lazywhere

f020eb52c518c11aad3eae6f642a1abb918b4727 authored over 1 year ago by Matt Haberland <[email protected]>
TST: add array-agnostic assertions (#19157)

* TST: add array-agnostic assertions
* TST: add `is_numpy`, `is_cupy`, `is_torch`

d55e2f905fc1b7f4a1f6a5f841ca7fb0ba505ae6 authored over 1 year ago by Lucas Colley <[email protected]>
Merge pull request #19018 from lucascolley/array_api_decorators

TST/BUG: fix array API test skip decorators

bc15b5146bb0963a680aa893f7a92b7a55ea714e authored over 1 year ago by Tyler Reddy <[email protected]>
ENH: sparse arrays for hstack, vstack, bmat, block_diag. New block. (#18862)

* Sparse arrays for hstack, vstack, bmat, block_diag. New block_array.

* clean up import and ...

c603df0b91003e756bd751553baa7a15dd61ac39 authored over 1 year ago by Dan Schult <[email protected]>
Merge pull request #19178 from dschmitz89/mvn_fit_doc

MAINT/DOC: add `fit` to multivariate normal methods in documentation

6f49f12eec681e7446fbc40015391d1e8a2b3a75 authored over 1 year ago by Matt Haberland <[email protected]>
DOC: fix minor doc issues [skip cirrus][skip actions]

a3895d00a52164585f336fe538c677ecb0ce6d1c authored over 1 year ago by dschmitz89 <[email protected]>
TST: optimize._bracket_root: test status flags

e6bc88207a1ba2ad93fee114428f32d599cb5193 authored over 1 year ago by Matt Haberland <[email protected]>
MAINT: optimize: scalar optimization algorithms merge fixup

5846e3204e40b7314c6be48d8974182f8e574db0 authored over 1 year ago by Matt Haberland <[email protected]>
DOC: optimize._bracket_root: update status codes and return documentation

3f2dd6c542e843820370c79803c157a2506e3918 authored over 1 year ago by Matt Haberland <[email protected]>
Merge remote-tracking branch 'upstream/main' into bracketer

6f845ec06da364a52f16852c4eeb2c63f787cc44 authored over 1 year ago by Matt Haberland <[email protected]>
DOC: stats.levy_stable: correct loc-scale note (#19175)

* DOC: stats.levy_stable: correct loc-scale note

Replace generic after_notes in levy_stable ...

a0d39d5508f928ab68dfe80508522b72ea0b9fea authored over 1 year ago by lutefiskhotdish <[email protected]>
Merge branch 'tanhsinh_fixup2' into tanhsinh_fixup

8efd2df11643319dc8062a7552ff633122491b11 authored over 1 year ago by Matt Haberland <[email protected]>
Revert "Revert "ENH: integrate._tanhsinh: tanh-sinh quadrature (#18650)""

This reverts commit de89e7e1148786e0b8428164021228646d139d4a.

91a8a2dda4a76d3d5f2c10da07daff1fd75e60d1 authored over 1 year ago by Matt Haberland <[email protected]>
Revert "ENH: integrate._tanhsinh: tanh-sinh quadrature (#18650)"

This reverts commit 7ab466d4c20f617c9b132182f793d60a3e475739.

de89e7e1148786e0b8428164021228646d139d4a authored over 1 year ago by Matt Haberland <[email protected]>
DOC: integrate._tanhsinh: fixed-precision -> finite-precision

d36b27eff0bb45b4e74177713cd04b59fa81b5e5 authored over 1 year ago by Matt Haberland <[email protected]>
MAINT: integrate._tanhsinh: ensure correct behavior with size-zero input

33dc64450ab5f71de24084f1ce9e830563d543e0 authored over 1 year ago by Matt Haberland <[email protected]>
MAINT: integrate._tanhsinh: default tolerance depends on dtype

84a0cbaf47196440f6f29067e411bdf78284299f authored over 1 year ago by Matt Haberland <[email protected]>
MAINT: integrate._tanhsinh: avoid ComplexWarning due to complex cached weights/abscissae

81874e12297717834320d206a956769db1d986d4 authored over 1 year ago by Matt Haberland <[email protected]>
MAINT: integrate._tanhsinh: avoid iterations if NaNs are present

d93ee4f9aef01615dd167e50b42f4595ca6c3597 authored over 1 year ago by Matt Haberland <[email protected]>
Merge pull request #19170 from rgommers/fix-cython3-warnings

MAINT: fix a number of issues in Cython code

f3c722125f4e29004916f2c8224f6dd44609766c authored over 1 year ago by Tyler Reddy <[email protected]>
BLD: special: fix dependencies for `_ellip_harm_2` (#19168)

Generating the source for `_ellip_harm_2` requires the
`cython_special.pxd` header to be genera...

d0fe75dbb4604de4611601e236e605f2926c6974 authored over 1 year ago by Ben Boeckel <[email protected]>
MAINT: special: remove DEF statements from Cython code where possible

If a constant in a DEF statement is used in multiple places, leave it
in place - it should be re...

1b6f678a97a554ab4fec4d51bbd961ca4c63b4c8 authored over 1 year ago by Ralf Gommers <[email protected]>
MAINT: remove DEF statements from `_lib` and `cluster`

3ccaa653ae463c047aabd7e7a58a8dd804f5f29a authored over 1 year ago by Ralf Gommers <[email protected]>
BLD: fix a dependency issue in the csgraph build config

Also move a `DEF` statement from parameters.pxi into the only file
it's actually used in, to red...

ab3a8bc9519ce1658351f6d04e44b9a38eb269ea authored over 1 year ago by Ralf Gommers <[email protected]>
BLD: fix `nogil noexcept` statements in `_ansari_swilk_statistics.pyx`

56b6bd54eb1cf567a0b7dba0d2de424b4d49fd8b authored over 1 year ago by Ralf Gommers <[email protected]>
ENH: special: Improvements for the incomplete beta functions. (#17697)

* ENH: special: Improvements for the incomplete beta functions.

* Use boost's ibeta as the ba...

0419998585ac058fab5aabeab6ae5f90b76abdf9 authored over 1 year ago by Warren Weckesser <[email protected]>
MAINT: Refactor recarray access (#19166)

[skip ci]

9e0d16893a4f2a9d42ebbe798c64afeebdc63106 authored over 1 year ago by Mateusz Sokół <[email protected]>
DEP: constants: improve deprecation of private modules named without underscore prefix

881b4f13c9d03b7b1b97c8ed0d48b76398833a26 authored over 1 year ago by akeemlh <[email protected]>
Merge pull request #19162 from ivirshup/sparse-transpose-axes

ENH: Allow `sparse_mtx.transpose(axes=(1, 0))`

692cefe1ea2585bf3e1c801afdc4526f5e1ace13 authored over 1 year ago by Tyler Reddy <[email protected]>
Allow sparse_mtx.transpose(axes=(1, 0))

5d5512688d1111e355084dd47ba3b415f0c2f2dd authored over 1 year ago by Isaac Virshup <[email protected]>
Merge pull request #19155 from andyfaff/gh19154

TST: bump equal_bounds tolerance closes #19154

c3ec353c503d23c1357e78ebff750755b3def8c6 authored over 1 year ago by Matt Haberland <[email protected]>
TST: bump equal_bounds tolerance

aa91691215caa0614ed3a10dfd146ff1ad5219a2 authored over 1 year ago by Andrew Nelson <[email protected]>
Merge branch 'main' into array_api_decorators

868700441a8ad86fddbe1039525ac9be798437bd authored over 1 year ago by Lucas Colley <[email protected]>
Merge pull request #19152 from anntzer/predecessor

DOC: fix predeces(s)or typo.

b37927159235b2fc5854128a7fca390e72a724d1 authored over 1 year ago by Tyler Reddy <[email protected]>
Merge pull request #18893 from aglebov/geometric-discrepancy

ENH: Geometric quality metrics for random sampling

2d27cf72806113e64f3eb4f3831dfd46bda1646c authored over 1 year ago by Pamphile Roy <[email protected]>
ENH: stats.multivariate_normal.fit: support fixed parameters (#18986)

* ENH: stats.multivariate_normal.fit: support fixed parameters

d07d4db7678e2e35d33d26a6433e32b752f8303a authored over 1 year ago by Daniel Schmitz <[email protected]>
DOC: fix predeces(s)or typo.

c8e5d9d07a81524d19d1c5d0e7c97f12f5c0d468 authored over 1 year ago by Antony Lee <[email protected]>
ENH: stats.beta.entropy: improve when one argument is large (#18714)

* ENH: stats.beta.entropy: improve when one argument is large

54b2dfb74933938cdf3eeff1e105f2b09ad794b3 authored over 1 year ago by Omar Salman <[email protected]>
Merge pull request #19095 from paulestano/17864_bfgs_Hk_init

ENH: optimize: add inv Hess estimate in BFGS

e7542f30e3a9bc37cae16fbd3fbd534e0dce20b4 authored over 1 year ago by Andrew Nelson <[email protected]>
MAINT: nits

09384e49c6c85a9197a7b8851b58a785b11379d4 authored over 1 year ago by Andrew Nelson <[email protected]>
Merge pull request #19143 from andyfaff/asfarray

MAINT: remove asfarray usage

9a43ba700ea3de7b366862c4ef935b87deb0c148 authored over 1 year ago by Andrew Nelson <[email protected]>
DOC: added examples to `stats.combine_pvalues` and `fft.fhtoffset` (#19129)

* DOC: added examples to `stats.combine_pvalues` and `fft.fhtoffset`

483f9a5a88b690fb96f35decd16069ce379fa77d authored over 1 year ago by Bijay Nayak <[email protected]>
ENH: integrate._tanhsinh: tanh-sinh quadrature (#18650)

* ENH: integrate.tanhsinh: initial commit

* MAINT: integrate.tanhsinh: move pair generation i...

7ab466d4c20f617c9b132182f793d60a3e475739 authored over 1 year ago by Matt Haberland <[email protected]>
Merge pull request #19141 from tylerjereddy/treddy_numpy_api_shims

MAINT: more NumPy API shims

8bb5e31784573f56a8de8362c15e61d66225f15b authored over 1 year ago by Andrew Nelson <[email protected]>
Merge pull request #19142 from andyfaff/cibw

BLD: update cibuildwheel to 2.15.0 [wheel build]

4d813d626b546d15c731fec906f9d8201067b3e6 authored over 1 year ago by Andrew Nelson <[email protected]>
MAINT: remove np.asfarray usage

df3037cb5d1d65a06bf0508140356dc6cbaaa0ba authored over 1 year ago by Andrew Nelson <[email protected]>
MAINT: remove np.asfarray usage

f568725f58f067d2c93f816ea50986d450bbd5c1 authored over 1 year ago by Andrew Nelson <[email protected]>
MAINT: more NumPy API shims

* to keep up with NumPy `2.0` related changes:
https://github.com/numpy/numpy/pull/24376

* this...

1f825dfbd755534eeb550226f88a182158656274 authored over 1 year ago by Tyler Reddy <[email protected]>
BLD: update cibuildwheel to 2.15.0 [wheel build]

a8a2894f9e90d5be297302e7d129a92913422d6a authored over 1 year ago by Andrew Nelson <[email protected]>
ENH: optimize: Addressing comments for #19095

Addressing line length and documentation comments.

aaa9fd7fd7ba055049e3a4f014f6f63483f3c17c authored over 1 year ago by Paul <[email protected]>
Update scipy/optimize/_optimize.py

remove double empty line bw `_check` functions

Co-authored-by: Andrew Nelson <[email protected]>

8ca0bfd35aaebf1403e30ae4a1578d6e498a45b5 authored over 1 year ago by Paul Estano <[email protected]>
BLD: revert to using published wheels [wheel build] (#19139)

* BLD: revert to using published wheels [wheel build]

5e136d908a50f18a7a99d0d6645d5cae957dc737 authored over 1 year ago by Andrew Nelson <[email protected]>
Merge pull request #19136 from tylerjereddy/treddy_inf_alias

MAINT: remove NumPy infty alias

d89af411c10d67f32df19df0b18e420f9d3e75fa authored over 1 year ago by Warren Weckesser <[email protected]>
DOC: Optimize: update DE documentation (#17495)

* update optimize.DE documentation

---------

Co-authored-by: Andrew Nelson <andyfaff@gma...

e3cbfac1b6878b9233c4da280e742d09565dc76a authored over 1 year ago by mkiffer <[email protected]>
MAINT: remove NumPy infty alias

* removed upstream in NumPy as prep for
`2.0` version:
https://github.com/numpy/numpy/pull/24376...

06fae78c148615ffb7250e69816412843a46c443 authored over 1 year ago by Tyler Reddy <[email protected]>
Merge pull request #19135 from WarrenWeckesser/remove-unused-pad-test-param

MAINT: signal: Remove the cval parameter from the private function _pad_test.

dbb7fcbbd5a21ba29d0814aa9a3b4d8a97b90c5f authored over 1 year ago by Tyler Reddy <[email protected]>
MAINT: signal: Remove the cval parameter from the private function _pad_test.

The parameter `cval` in the private helper function `_pad_test` is not
used, so remove it. This...

71cff1bda4ce6baa8cadde5edbb76ec6abcd386e authored over 1 year ago by warren <[email protected]>
ENH: optimize: #19095 change `h0` to `hess_inv0`

6129ddfb29cf0972711b21c2e0f6d5db9dda0d36 authored over 1 year ago by Paul <[email protected]>
Merge pull request #19111 from hwalinga/strictly_feasible_starting_bounds

BUG: Fixes #19103 by adding back make_strictly_feasible to lsq trf.

d2ab591e734c656c5f91214b0850323bd2a9a35c authored over 1 year ago by Tyler Reddy <[email protected]>
DOC: integrate: Add complex matrix DE solution to examples (#14103)

* DOC: integrate: fixed issue #13437
Added examples to solve complex matrix differential equati...

41c61b2de9a2dbef6705f961fe6836f1b5916d31 authored over 1 year ago by Kevin Topolski <[email protected]>
DOC: linalg: fix typos in pinv docs (#19127)

* Fix Issue : #19063

Fixed typo in documentation
link of typo
https://github.com/scipy/sci...

3971c03e587b251f3c3339aa84fc0c9be46ae9c9 authored over 1 year ago by Dipansh Uikey <[email protected]>