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github.com/scipy/scipy

SciPy library main repository
https://github.com/scipy/scipy

BUG: Use uint32 for cost in NI_WatershedElement

Fixes #19575

784e09266092e820370ac36e913fa5e3c2d1e0b3 authored about 1 year ago by Simon Segerblom Rex <[email protected]>
DOC: add notes on editable installs under the Building from source

This has been quite stable for some months, so it's time to add this
as an option to the docs.

...

31e4858b356b7c163c646ddc48cb50e8e0994655 authored about 1 year ago by Ralf Gommers <[email protected]>
DOC: add `meson-python` as a build dependency under Building from source

The first line changed is a bug/omission, because the next step uses
`--no-build-isolation`. For...

9dcd81b2e8afa285be29d425b0ed09fefef171fc authored about 1 year ago by Ralf Gommers <[email protected]>
MAINT: Restructure extra_special (working name) as internal library (#19515)

* Add private _get_include for scipy::special scalar functions

* Fix include path

* Remove...

4ff7bc51793b5e0e185d474609141780bf6079a2 authored about 1 year ago by Albert Steppi <[email protected]>
DOC: Fixed build instructions in index.rst (#19568) (#19570)

e8d46be60907dcdd513ebd3b6cf7ff4d3ca1de52 authored about 1 year ago by Ashish Bastola <[email protected]>
Merge pull request #19516 from lucascolley/lint-UP

MAINT: lint: enable UP rules

731b3254ab0d69026000ffef9d64852cbd520d92 authored about 1 year ago by Stefan van der Walt <[email protected]>
MAINT: blame-ignore for UP rules clean-up

3b631db5207b6b3525737e8f8d2fcbfa979e4fb9 authored about 1 year ago by lucascolley <[email protected]>
MAINT: lint: clean-up for UP rules

9cf72e4599e0a22902ef3bc1a42e645240b1734d authored about 1 year ago by lucascolley <[email protected]>
Merge pull request #19564 from DietBru/ignore_build-install

MAINT: Mark in `.gitignore` the directories instead of their content as ignored.

5c168a31a92dac80d2b0896020e2d3776ae30dc7 authored about 1 year ago by Tyler Reddy <[email protected]>
MAINT: Mark in ``.gitignore` the directories instead of their contents as ignored.

0f099e44fbcbb0fe3806cab490c86a1b9e7a7745 authored about 1 year ago by Dietrich Brunn <[email protected]>
MAINT: Fix typos in references (#19562)

ab53b95eb4258ab46f36bf7d55ad233841b270b0 authored about 1 year ago by Jessy Lauer <[email protected]>
Merge pull request #19558 from tylerjereddy/treddy_forward_114_notes

MAINT: forward port 1.11.4 relnotes

bb835ecf762882fecb6cb9ce91c49ea64935e1c9 authored about 1 year ago by Evgeni Burovski <[email protected]>
MAINT: forward port 1.11.4 relnotes

* forward port SciPy `1.11.4` release notes + version switcher
adjustment following the release ...

b4f64cb4611677b8006339d55ca4b69eb402fa1a authored about 1 year ago by Tyler Reddy <[email protected]>
DOC: revert part of bcbb18f / #19533 (#19556)

This really should be approximatively, not approximately.

86ab60469451c3bfb8c3e5f150c862b3c50e4f42 authored about 1 year ago by Dimitri Papadopoulos Orfanos <[email protected]>
ENH: add beta negative binomial distribution to scipy.stats (#19385)

3e9642f34c7494c9a109d76ae2117ffaf8f6674d authored about 1 year ago by Daniel Schmitz <[email protected]>
DOC: fix more typos found by codespell (#19533)

* DOC: fix more typos found by codespell

* DOC: intervals → integrals

* DOC: revert change...

f3cda9db9ad67cc897953fc2d1786edc651c1d4e authored about 1 year ago by Dimitri Papadopoulos Orfanos <[email protected]>
MAINT: Fix interpolate.make_smoothing_spline's size validation message.

"Greater than 5" means >5, "At least 5" means >=5 (which is the actual
test, see the line immedi...

62a825563c06d00e2781a2fc2cecf0f9b9ebf0a3 authored about 1 year ago by Antony Lee <[email protected]>
DOC, MAINT: more refguide fixes (#19527)

* DOC, MAINT: more refguide fixes

* see: https://github.com/scipy/scipy/pull/19525#issuecomment...

73fc62619bcaa225c9d12b33e1ad0bb80e4461d0 authored about 1 year ago by Tyler Reddy <[email protected]>
Merge pull request #19540 from EwoutH/patch-6

MAINT: stats.binomtest: improve error messages

0dd80e6eeff926dac850b03f3cd48ff2dd31b07c authored about 1 year ago by Matt Haberland <[email protected]>
TST: stats.binomtest: update invalid arg tests

b310d99c87a95ef451f36e0c1f729ec67c6de634 authored about 1 year ago by Matt Haberland <[email protected]>
MAINT: lint: enable UP rules

d1d4f4bcc4e567550b8236bb46ad3faf92a46237 authored about 1 year ago by lucascolley <[email protected]>
Merge pull request #19529 from lucascolley/blanket-noqa

MAINT: blanket `noqa` vet

fccfd29f28e7cc8c6718ef224d29fbf28a5681a2 authored about 1 year ago by Matt Haberland <[email protected]>
MAINT: blame ignores for `noqa` clean up

[skip ci]

d75813d4a65dc5ad43dd2d1198bbbef1c0136206 authored about 1 year ago by lucascolley <[email protected]>
MAINT: lint: remove blanket F401 ignores in `optimize`

4b1eb22ecf601aec952aa940d23f60d17f1bbc0f authored about 1 year ago by lucascolley <[email protected]>
MAINT: remove unused `noqa`s

05b872da4f498d923dbf5f5f38691b9a21580914 authored about 1 year ago by lucascolley <[email protected]>
MAINT: blanket `noqa` clean-up

664a42c9a7945a0a47f876baa6d27fb4c31c6847 authored about 1 year ago by lucascolley <[email protected]>
DOC: _binomtest.py: Add clearer error messages

Print actual values if ValueErrors occur in _binomtest.py.

ed58532750e31f5425dbea1b827ebf394218d9d2 authored about 1 year ago by Ewout ter Hoeven <[email protected]>
MAINT: get rid of more Python 2 left-overs (#19534)

These might have been previously skipped because of the missing space
after the colon.

[ci s...

08fec5550152ca1ad13ba6edf36d2fb23c7a458d authored about 1 year ago by Dimitri Papadopoulos Orfanos <[email protected]>
MAINT: lint: reject blanket `noqa`

4780bb2cef43fb07d2e5ac54131c45e2f07464bd authored about 1 year ago by lucascolley <[email protected]>
Merge pull request #19523 from lucascolley/line-length-constants

MAINT/STY: constants: remove E501 (line length) lint ignore

67b2a47ac0dcc909e379b33a733da4d52f92f4fd authored about 1 year ago by Jake Bowhay <[email protected]>
MAINT: restrict E501 ignore for `constants` to `_codata.py`

a9d1a0f76a9bbce2e2264bcf835eac3db62e0714 authored about 1 year ago by lucascolley <[email protected]>
STY: constants: E501 (line length) clean up

4a4a3de8bc23ad61299d69517ec73b0b3890a34a authored about 1 year ago by lucascolley <[email protected]>
same changes in test_cs[rc]

c04ef213776d27b44a0786b02e89e3dd098978f3 authored about 1 year ago by Dan Schult <[email protected]>
switch to format and toarray in sparse tests

a3b02c60a7c0fc9592d924e142da8ebc97b07cd5 authored about 1 year ago by Dan Schult <[email protected]>
adjust array whitespace

7b7d24c9b89e3ae651a2a77641fcd96255a2001a authored about 1 year ago by Dan Schult <[email protected]>
Merge pull request #19525 from tylerjereddy/treddy_circle_refguide_shim

DOC, CI: refguide may vary locs

2a6129f229f0a1c900fa2fb06d99410dbb86093b authored about 1 year ago by Evgeni Burovski <[email protected]>
DOC, CI: refguide may vary locs

* add `# may vary` to two doc examples in attempt
to repair refguide-check circleCI fails like t...

1d45febbb8eab1344bccd099751f5c8a3940b154 authored about 1 year ago by Tyler Reddy <[email protected]>
Merge pull request #19520 from lucascolley/line-length-fft

MAINT/STY: fft: remove E501 (line length) lint ignore, `noqa` clean-up

2c042180d3a73bc524410eb25fe2df2391a7e123 authored about 1 year ago by Jake Bowhay <[email protected]>
MAINT: blame-ignore for fft E501 clean up

[skip ci]

f290f6a5f85367143772300255d5b11c9b6cd967 authored about 1 year ago by lucascolley <[email protected]>
MAINT: fft: `noqa` clean up

101c30e3609d9a86bf0fe2808f6d4215171428c5 authored about 1 year ago by lucascolley <[email protected]>
STY: fft: E501 (line length) clean up

9d41d85c472438cf17211b843de7c770868d25a4 authored about 1 year ago by lucascolley <[email protected]>
MAINT: lint: remove E501 ignore for `fft`

c1ff5359c6f6ea861df60eeecf5d390164f12564 authored about 1 year ago by lucascolley <[email protected]>
Merge pull request #19514 from lucascolley/line-length-odr

MAINT/STY: odr: remove E501 (line length) lint ignore

6a4cc77c0611b716e48e2328c654aa3b6f54734b authored about 1 year ago by Jake Bowhay <[email protected]>
MAINT: blame-ignore for odr E501 clean up

[skip ci]

8c3162c7cd2355dc1d7172f43444ae73918fbb41 authored about 1 year ago by lucascolley <[email protected]>
MAINT: NumPy int type shims (#19466)

* MAINT: NumPy int type shims

* a few integer type handling adjustments following the upstrea...

bdbc9cb595ff865060922d155196ed290acfd09f authored about 1 year ago by Tyler Reddy <[email protected]>
STY: odr: E501 (line length) clean up

877f1cc34ad2147340684bcadfbf884d47f5a954 authored about 1 year ago by lucascolley <[email protected]>
MAINT: lint: remove E501 ignore for `odr`

2d0799f03fda4ec1406a16092ac2367b0fcd65d1 authored about 1 year ago by lucascolley <[email protected]>
DOC, MAINT: Bump CircleCI Python version to 3.11 (#19504)

* DOC, MAINT: Bump CircleCI Python version to 3.11

* Add pin for myst-nb on CircleCI config t...

20d3047ac50c85f9319f63df548698a5473a44d4 authored about 1 year ago by Melissa Weber Mendonça <[email protected]>
Merge pull request #19519 from scipy/fix-tutorial

DOC: Fix example used in stats tutorial

287f2c9a53e1a75693df3d88309f16b210255261 authored about 1 year ago by Tyler Reddy <[email protected]>
DOC: Fix example used in stats tutorial

[skip azp] [skip cirrus]

4b20ba72e4d51ca88d3e111cab044065d3ad6b80 authored about 1 year ago by Melissa Weber Mendonça <[email protected]>
Merge pull request #19505 from lucascolley/line-length-scipyoptdoc

MAINT/STY: `scipyoptdoc.py`: remove E501 (line length) lint ignore

ca135ae16ec6c8870f16b08d1a8eaca50418b1ac authored about 1 year ago by Matt Haberland <[email protected]>
MAINT: blame-ignore for `scipyoptdoc.py` E501 clean up

[skip ci]

d3ff8904fca61ab4f150329279c8ffc98dfa520d authored about 1 year ago by lucascolley <[email protected]>
MAINT: Translate binom to C++ (#19471)

* Translate binomial coefficient to C++

* Fix typos in use of floor

* Avoid polluting glob...

bf819ba58a6ccd51cc6d6dacf88ab18a80355148 authored about 1 year ago by Albert Steppi <[email protected]>
MAINT: Fix/parametrize Rotation tests. (#19302)

* MAINT: Fix/parametrize Rotation tests.

The test were slightly incorrect in the sens that th...

93e96d296d20b9aef61b687dc13d89bb72cc123a authored about 1 year ago by Matthias Bussonnier <[email protected]>
Merge pull request #19508 from lucascolley/optimize-lint-errors

MAINT/DOC/BENCH: optimize: fix linter errors

c25147a9213eae43e7dd1d4dad85ddfe2bb7ad88 authored about 1 year ago by Tyler Reddy <[email protected]>
Merge pull request #19509 from lucascolley/lint-errors

MAINT: fix remaining lint errors

a11dccac56bb96ca6e8dbf02a9d30bf867111d7e authored about 1 year ago by Tyler Reddy <[email protected]>
Merge pull request #19507 from lucascolley/stats-lint-errors

MAINT/DOC: stats: fix lint errors

8c62b069f821938db7d11480d7909f0068da5562 authored about 1 year ago by Matt Haberland <[email protected]>
MAINT: fix remaining lint errors

472876787c0adb10b67018c3b22ec3aeac92717f authored about 1 year ago by lucascolley <[email protected]>
MAINT/DOC/BENCH: optimize: fix linter errors

3428e8506103f473524282f7cf037dc76a5df031 authored about 1 year ago by lucascolley <[email protected]>
MAINT/DOC: stats: fix lint errors

03d0ac36efdb9caf3cdb25023bd98fdc05fee819 authored about 1 year ago by lucascolley <[email protected]>
STY: `scipyoptdoc` E501 (line length) clean up

[skip circle]

Co-authored-by: Matt Haberland <[email protected]>

49858c5fb2bf479b17a0bf42a7397d73f45f1b31 authored about 1 year ago by lucascolley <[email protected]>
MAINT: lint: remove E501 ignore for `scipyoptdoc.py`

4c896e4e5158fe26d898d27971e34c8bbdcc6890 authored about 1 year ago by lucascolley <[email protected]>
Merge pull request #19503 from lucascolley/line-length-fftpack

MAINT/STY: fftpack: remove E501 (line length) lint ignore

290c6b9a07067c09a621187f256ddc63348793dd authored about 1 year ago by Jake Bowhay <[email protected]>
MAINT: Make use of sf_error conditional on flag in scipy::special C++ library (#19482)

630bdb9f5e595900d2f2bc536cca985fb7a39b81 authored about 1 year ago by Albert Steppi <[email protected]>
MAINT: blame-ignore for `fftpack` E501 clean up

[skip ci]

244436728e06e634162920fdc570b5bc9bdd1088 authored about 1 year ago by lucascolley <[email protected]>
MAINT: lint: remove E501 ignore for `fftpack`

bf264a2e178eb0333342df9c78ccecb36c917142 authored about 1 year ago by lucascolley <[email protected]>
STY: fftpack: E501 (line length) clean up

39787f146137b0ec9d31907989c6f104ba7eed76 authored about 1 year ago by lucascolley <[email protected]>
Merge pull request #19501 from tylerjereddy/treddy_bootstrap_test_skip_32_bit

TST: skip test_bootstrap_against_theory

d1c786632bcbcfff8a8227fa2043db6e34f95ba1 authored about 1 year ago by Matt Haberland <[email protected]>
Merge pull request #19484 from mattip/limit-scipy-openblas

CI: limit scipy-openblas32 wheel to 0.3.23.293.2

a90123694ac755365c9742512d903e8d42f67748 authored about 1 year ago by Tyler Reddy <[email protected]>
TST: skip test_bootstrap_against_theory

* skip `test_bootstrap_against_theory()` on 32-bit architecture
because it is failing fairly fre...

47fab41d79c7a8e418487788d1d11fc8705a7f31 authored about 1 year ago by Tyler Reddy <[email protected]>
Merge pull request #19494 from lucascolley/line-length-conftest

MAINT/STY: `conftest.py`: remove E501 (line length) lint ignore

d8f317f0014f8d15ed27dd54e2c202968fa1ee46 authored about 1 year ago by Jake Bowhay <[email protected]>
MAINT: get rid of Python 2 left-overs (#19495)

5ca9dab581889c9d69981689376b1de9d540bb43 authored about 1 year ago by Dimitri Papadopoulos Orfanos <[email protected]>
BUG: Fix typecasting problem in scipy.sparse.lil_matrix truediv (#19408)

* Fix typecasting problem in lil_matrix truedriv

* Added test

---------

Co-authored-by:...

6f16ecc0957a0bc7d60932e89bb2b0b0d1a92a66 authored about 1 year ago by Nicolas Vetsch <[email protected]>
Merge pull request #19491 from lucascolley/line-length-misc

MAINT/STY: misc: remove E501 (line length) lint ignore

6ea14ff8bcb8cd3e4b8fba718f78a6cd265a84c8 authored about 1 year ago by Matt Haberland <[email protected]>
STY: `conftest.py` E501 (line length) clean up

7abe5acbe023b6b81368fc5a99dd2eff569bd5a3 authored about 1 year ago by lucascolley <[email protected]>
MAINT: lint: remove E501 ignore for `conftest.py`

f0c26896de72db56159b80b7a663c0c5d595fe6b authored about 1 year ago by lucascolley <[email protected]>
DEP: special: improve deprecation of private modules named without underscore prefix (#19469)

* DEP: special: improve deprecation of private modules named without underscore prefix

* STY:...

d769eefab3f8319d0b52d81bae88cb0a029c5cbb authored about 1 year ago by Jake Bowhay <[email protected]>
MAINT: blame-ignore for `misc` E501 clean up

6a8d4cfbe9d764acb4b6cd04d71266f8afa9c867 authored about 1 year ago by lucascolley <[email protected]>
STY: misc: E501 (line length) clean up

8870c5d01a6f91a737db4642343ef997a63c8584 authored about 1 year ago by lucascolley <[email protected]>
Merge pull request #19489 from lucascolley/line-length

MAINT: lint: ignore E501 (line length) by subpackage

fbd015a7314dae13d4d6885205cbdf0b71ac9d41 authored about 1 year ago by Jake Bowhay <[email protected]>
MAINT: lint: remove E501 ignore for `misc`

290c7da3247e3438b22d8680fbdcfb3ed14e63d5 authored about 1 year ago by lucascolley <[email protected]>
MAINT: add E501 (line length) ignores by subpackage

c6baf72f5d919bd4e13b30957923801bf7e4a709 authored about 1 year ago by lucascolley <[email protected]>
MAINT: remove E501 (line length) ignore

56277c43fedeeb9758b3d6ee596a79febaa5ae6a authored about 1 year ago by lucascolley <[email protected]>
ENH: stats: simplify and add masked array, axis tuple, and nan policy support to trimmed statistics (#19425)

* ENH: stats: simplify and add masked array, axis tuple, and nan policy support to trimmed stati...

4d50bca5eeabe650a8dc9729f32a886a48f13ba9 authored about 1 year ago by Tirth Patel <[email protected]>
ENH: stats.levene/fligner: add axis / nan_policy / keepdims support (#19428)

80c81df56fa118e9a86b9e0283bf79c3dfbd3969 authored about 1 year ago by Matt Haberland <[email protected]>
BLD: prerelease uses different versions

974d389a74977cfe1683ca226e4da6789f2ed1ee authored about 1 year ago by mattip <[email protected]>
BLD: limit scipy-openblas32 wheel to 0.3.23.293.2

a580420313075d4b0d156d9d8ca1b5623bf4cd32 authored about 1 year ago by mattip <[email protected]>
Merge pull request #19458 from scottshambaugh/rotation_docs

DOC: spatial: Rotation docs updates

6ce4aaf4bc5222e3d1355cd8a392e88f45b4f959 authored about 1 year ago by Tyler Reddy <[email protected]>
Merge pull request #19472 from alugowski/fmm174

MAINT: Update fast_matrix_market to 1.7.4

8a7959d449f46017bef5388f696ce11615176b9f authored about 1 year ago by Tyler Reddy <[email protected]>
MAINT: Update fast_matrix_market to 1.7.4

Keep in sync with upstream.

The changes are purely on the C++ side. Mainly:
* Fix `#include` e...

5624ebb00ab40c1dcffe8b6bd790ba108b681ca2 authored about 1 year ago by Adam Lugowski <[email protected]>
Merge pull request #19465 from njzjz/patch-1

DOC: fix broken NetCDF URL

4d790c14456f72ef7a56aafa0dcc728e5bba22fe authored about 1 year ago by Tyler Reddy <[email protected]>
DOC: fix broken NetCDF link

The previous link is 404.

c29f23d213e499c7e5a4570c26198e9b06df06ac authored about 1 year ago by Jinzhe Zeng <[email protected]>
Merge pull request #19461 from lucascolley/line-length-doc

DOC: dev: update max line length to 88 characters

ae026f72fbc3b6c60a5d5b9d2e392b5c1919fd44 authored about 1 year ago by Tyler Reddy <[email protected]>
DOC: dev: update max line length to 88 characters

[skip cirrus] [skip actions]

7f4053d4a91c6da3278b63856a774736ce48a12c authored about 1 year ago by lucascolley <[email protected]>
MAINT: Translate lambertw_scalar into C++ (#19435)

18d0a2f49fa1775e5692ad66b01ff76d62fa27ce authored about 1 year ago by Albert Steppi <[email protected]>
Fix typo

40ea440982050991381403c918d59f767f7fe9c8 authored about 1 year ago by Scott Shambaugh <[email protected]>
Rotation docs updates

18133d6452fb7dcb7802c7c6cf964d9cfe796344 authored about 1 year ago by Scott Shambaugh <[email protected]>
DOC/MAINT: fft: fix signature for next_fast_len (#19449)

[skip ci]

038fc6118587439be203c3bf162dd591ae6a3f5d authored about 1 year ago by Jake Bowhay <[email protected]>
Merge pull request #19453 from nihilisticneuralnet/main

MAINT:signal:Added parentheses for expression w*(fs/(2*pi))

5bffb500c548b38b82912bc1bd26d43f24a1976d authored about 1 year ago by Ilhan Polat <[email protected]>
hf

845b9bc69ceb440e167f1d8fcb3d0f108eff6dcf authored about 1 year ago by John Doe <[email protected]>