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github.com/scipy/scipy

SciPy library main repository
https://github.com/scipy/scipy

STY:Applied linting corrections

93a22fd053c13071646b429cd271e92ee0509738 authored about 3 years ago
Merge pull request #15142 from tirthasheshpatel/srou

ENH: stats.sampling: add SROU method

a25ea1bf5d069f2dd2f9f78393d4c97377f16599 authored about 3 years ago
DOC: Improve Chirp Z-transform documentation (#15147)

* Describe default w

* Default linspace endpoint=True, zoom_fft is False

* Remove "optiona...

9cbbbba944340322aff9d780053734b32d57da3a authored about 3 years ago
DOC: stats: add an example demonstrating fast setup of SimpleRatioUniforms

a1b761ecdf431e9bed4b66d428a683b063c7537b authored about 3 years ago
Merge pull request #14338 from charlotte12l/fix-14332

BUG: fix `stats.binned_statistic_dd` issue with values close to bin edge

15df2084b0757ace4b0d206ba84a10fbcbfd8aab authored about 3 years ago
Merge pull request #15135 from duetosymmetry/special-elliptic-integral-carlson-cpp

ENH: Carlson symmetric elliptic integrals.

abdb02d898b5dda9c45392cba5dbc0c2fcd30c35 authored about 3 years ago
Merge pull request #15143 from WarrenWeckesser/unused-imports

MAINT: Remove some unused imports.

fa3f25df66f5884453d02cee99405cdb98bffaca authored about 3 years ago
Merge pull request #15144 from WarrenWeckesser/bug-runtests-errno

BUG: Add missing import of 'errno' to runtests.py

499ab9e61555996f6b64a3d0f1681f1dc0d15d04 authored about 3 years ago
Merge pull request #15087 from Kai-Striega/fix_distance_verbosity_test

TST: Review ``_assert_within_tol`` positional arguments

adcd8f8b3e65cf7398a754ac4857a83599476cbf authored about 3 years ago
DOC: Clarify documenation on atol/rtol (#14506)

Contrasted atol to rtol and provided explicit instructions for how to
achieve desired atol or r...

ef409eb3f7f2aaee541046f622a7697016e14d4c authored about 3 years ago
fixes typo in equation for Poisson cumulative distribution function (#15138)

316398cc8e4b5a93bb679f45437043b03c1b3d33 authored about 3 years ago
TST:Added test for even window length

817f4f2e05b4e5c6a10b3b941d1d629fe54072af authored about 3 years ago
ENH:Added support for even window length

b2b1281282878e526e7efced73f67188cf9fe819 authored about 3 years ago
Add Chirp Z-transform, zoom FFT (#4607)

* Add chirp z-transform, zoom FFT, scaled FFT

Written by Paul Kienzle and Nadav Horesh, publi...

9a504cd27ad6f7b3c0590f2c7fef9f329ef56508 authored about 3 years ago
BUG: Add missing import of 'errno' to runtests.py

e6a0b1d50f6cbf70bf0055e9ed47446d413e2417 authored about 3 years ago
MAINT: Remove some unused imports.

ed9d688a6e42093c3f2bb67cda7d411ddcb2d565 authored about 3 years ago
DOC: stats: address review comments

fa23817064272bf7bf156ca2ef7e21f3bace0bd3 authored about 3 years ago
MAINT: Install `sparse.linalg._eigen` tests and fix test failures (#15120)

- Install `eigen` tests (tests were not run before, aside from on an in-place build)
- fix user...

2b02296ea660bd569e4f8d33fe6fb11777be8294 authored about 3 years ago
BUG: stats.sampling: set PDF area after setting domain

4f94bfdd4b3e65fccd78ea8cce964eb0df1f27fa authored about 3 years ago
Merge pull request #15137 from WarrenWeckesser/special-examples

DOC: special: Add 'Examples' to multigammaln and roots_legendre docstrings.

45df21fd8f1308fcf0662fbbf30caf26ab0e662c authored about 3 years ago
ENH: stats.sampling: add SROU method

This PR adds Simple Ratio-of-Uniforms method to sample random variates from
continuous distribut...

1d60afe118ac19531dc72a97f290ae286630a8d4 authored about 3 years ago
DOC: sparse.linalg: Fixed the docstrings in the sparse matrix inverse function (#15126)

81b99aefd80cf0e80e9c068be8ebc25f45745a98 authored about 3 years ago
TST: Revert to `atol` test_pdist_jensenshannon_iris

abbfda58ca70b4fa32056e44df653ea954dce9f3 authored about 3 years ago
DOC:signal: Use constrained_layout in Lomb-Scargle example

Use constrained_layout in Lomb-Scargle example

84c4a1d012cb8c07cb2cfb4299e47063fd839578 authored about 3 years ago
Use constrained_layout in Lomb-Scargle example

The plot axes labels were overlapping

https://github.com/scipy/scipy/pull/15134#issuecomment-98...

1bcc3bc922dcc783b749209b926501b6a3b38745 authored about 3 years ago
TST: Fix verbose_ argument

229b658555392187b84558a6f4f33f078d557820 authored about 3 years ago
DOC, TST: Carlson's, Legendre's elliptic integrals

* Add documentation of relations between Carlson's and Legendre's
elliptic integrals. These re...

2102f1ba96009b29c3cc62782e46b61988420e14 authored about 3 years ago
BUG, DOC, MAINT, TST: Carlson symmetric elliptic integrals

NOTE: This is a squash of several of @congma's original commits.
---Leo C. Stein <leo.stein@gmai...

a7a62b2843aadc2b237fa11cd26aa68380bfe9fc authored about 3 years ago
ENH: Carlson symmetric elliptic integrals.

This changeset implements the Carlson symmetric elliptic integrals
R{C,D,F,G,J} as ufuncs in sci...

8d9166b87279432476d0af33feb46df635b40a11 authored about 3 years ago
Merge pull request #14441 from rgommers/testhook-threadpoolctl

ENH: TST: add a threadpoolctl hook to limit OpenBLAS parallelism

c0815e3b50f8e0a639cf4cb093db27606934ca9e authored about 3 years ago
Merge pull request #15102 from peterbell10/dcst-ortho-argument

ENH: Add orthogonalize argument to DCT/DST

e5da8c3fe3b495e05c354e8989807044bd53216d authored about 3 years ago
Merge pull request #14992 from serge-sans-paille/feature/pythran-within_block_loop

Pythranized version of _matfuncs_sqrtm

478e99ffe8c2a6e8ab78347744d5f7e5e6ec308f authored about 3 years ago
TST: Remove `_assert_within_tol` from merge commit

c382bdfb8384812bc38044ab03a860f711a2e46f authored about 3 years ago
Merge branch 'master' into fix_distance_verbosity_test

d3bdc48aeddcfd1c23397752375696fe6d34e2d9 authored about 3 years ago
TST: Use atol for ``test_pdist_cosine_iris_*`` tests

`atol` leads the tests to pass allowing the changes to the other
tests to be included in the 1.8...

3a6faa422650bcb878f9428542f2f89ce5e5fe2d authored about 3 years ago
ENH: improve ARGUS rv generation in scipy.stats (#11954)

* ENH: improve ARGUS rv generation in scipy.stats

19647a8c9002b5cc6b110a877f28a3c6c6196dd9 authored about 3 years ago
DOC: special: Add 'Examples' to roots_legendre

d2660b3e933b88b6fd3ac9c12f4eb55cde63203e authored about 3 years ago
DOC: special: And 'Examples' to multigammaln docstring

eb3b7cde2ffa4887a6021c28f2d0b11e5f037359 authored about 3 years ago
Merge pull request #15111 from WarrenWeckesser/log_expit

ENH: Add special.log_expit and use it in stats.logistic

91a279ecb05e7814e2787bfa618d46ad3e0af2be authored about 3 years ago
Merge pull request #15127 from perimosocordiae/perimosocordiae-patch-7

DOC: update linux build instructions to mention C++

d42c18e71ee90915534cde7796c5bd5c8ffe6b4c authored about 3 years ago
Merge pull request #14822 from stefanv/sparse-ndarray-api

Add an array API to scipy.sparse

41dd89916870ea215f612727ecf42d12ea434657 authored about 3 years ago
MAINT: interpolate: move the `sparse` dependency from cython to python (#15123)

ee6d3262a18e4bbb5914339cb3afbb98ef75da1e authored about 3 years ago
DOC: Improve Lomb-Scargle example (#15134)

Phase info isn't returned by the function, so including phase shift phi
seems distracting.

U...

75f1566613bf3b0f688a136b72b8d766d441bd6f authored about 3 years ago
ENH: support creation of analog SOS outputs (#15085)

Closes gh-5668.

Add analog argument, default False, to zpk2sos, and add new pairing
option '...

fbfce7eb60e2470fafec97c864f40e1a909d3c23 authored about 3 years ago
BUG: correct frequency checks in signal.iirdesign and .iirfilter (#15092)

Closes gh-13404.

For iirdesign, allow frequencies greater than 1 when fs > 2. For
digital f...

5fc8ab679f9638e06c59fb627abe9a3df14b59e4 authored about 3 years ago
Update linux build instructions to mention C++

153b48752e19183125d03a2c60711c5560a855e9 authored about 3 years ago
DOC: fix symlink to `logistic.sf` in `stats.logistic` (#15119)

Co-authored-by: Evgeni Burovski <[email protected]>

7a89f8e38ea2c4ea1f9f7d369d89672a75e25eef authored about 3 years ago
Merge pull request #15055 from h-vetinari/minkowski-p

ENH: allow p>0 for Minkowski distance

f770a6c444ca2bda3037afcc7e5d3347cee5ade0 authored about 3 years ago
Merge pull request #15112 from pantelisantonoudiou/butter-docs

DOC: update 'Wn' definition in signal.butter

b9a4b11053692a955a948a7b7e89b1b409e10e62 authored about 3 years ago
DOC: update toolchain.rst (#15045)

* DOC: update build infra description

* DOC: remove obsolete mention of Accelerate BLAS

* ...

7ff929107c90ead71d2368a8a71008290b7d7df5 authored about 3 years ago
ENH: TST: add a threadpoolctl hook to limit OpenBLAS parallelism

This is taken over with minor modifications from scikit-learn.
The most dramatic effect of this ...

7865e35cc4e6cafccae8438c44b12477208ae399 authored about 3 years ago
CI: DOC: add optional dependency on threadpoolctl

a659b84ccecd2a3299b1455be6f0532c8db42fb9 authored about 3 years ago
Merge pull request #14700 from mdhaber/roadmap_update

DOC: update detailed roadmap

3b1d6fd7e598cb877f7e5936c573f9d383bf6842 authored about 3 years ago
Merge pull request #14555 from perimosocordiae/perimosocordiae-patch-6

BUG: sparse: fix a DIA.tocsc bug

a036357cb412f5153fecc84de03d7d260f681a81 authored about 3 years ago
MAINT: Add missing imports in deprecated modules (#15105)

2a527146199c7709ec880e7c74fb43d507e00d54 authored about 3 years ago
MAINT: Include `stats.contingency` in public API (#15100)

d72bb9d191cadb52d51cdcdd6dd397850a9843df authored about 3 years ago
Fix for complex Fresnel (#14920)

Fixes #12309.

Fresnel integral calcalation is done differently in three regions:

- All is ...

b5df7aa8be2bbf32697680730a8bc3950a2c1265 authored about 3 years ago
BUG: Fix hyp2f1 to return correct values in regions near exp(±iπ/3). (#14706)

This updates `scipy.special.hyp2f1` for complex `z` in the region
defined by 0.9 ≤ |z| < 1.1, |...

592860636f5d1c57413a8fea8e0ae2b2eec7de1b authored about 3 years ago
Merge pull request #15114 from zerothi/fermi-dirac

DOC: added Fermi-Dirac distribution by name

71dcdbe717cc455cd9073c8183cda461a21ebd7f authored about 3 years ago
DOC: added Fermi-Dirac distribution by name

This makes the documentation clearer about the association
of the logistic distribution equallin...

5e6b217dd36f62b4e9ead2c2bd9b783761d88298 authored about 3 years ago
BUG: Update chi_gen to use scipy.special.gammaln (#15107)

* BUG: Update chi_gen to use scipy.special.gammaln

f953ba77ae402e2f307b69e2584679b91b3b0edb authored about 3 years ago
Merge pull request #15109 from chrisb83/remove_rou_naive

MAINT: remove NaiveRatioUniforms from scipy.stats

c255b7d019c175eed2d1b7b29c590e5f70d9f030 authored about 3 years ago
MAINT: Create c++ wrapper of sf_error.c

Without this, and with the current configuration in setup.py,
the build system attempts to compi...

37af69710ef2d9d09ae5e08e10ef29de4ff46670 authored about 3 years ago
MAINT: special: Add cxx flags hook for cxx ufuncs.

cced6877f883e5e08df6fb365f8a09faebaf71b8 authored about 3 years ago
ENH: stats: Use special.log_expit in logistic.logcdf and .logsf

0056c1961e235df5e1e9306078e3bb3379d07156 authored about 3 years ago
ENH: special: Add the ufunc log_expit

f5012eab4f09d5554d92174e29bba82737da1c30 authored about 3 years ago
update 'Wn' definition in butter

950d3c62608186c28270cd1593b845fd368180e6 authored about 3 years ago
MAINT: remove NaiveRatioUniforms from scipy.stats

b2a3363e204d564b801cebfbbe63c018eaec9882 authored about 3 years ago
Merge pull request #15095 from tirthasheshpatel/fix-gitignore

MAINT: update gitignore to ignore private directories

3f05efb9498e29f4e735aa7e0220139a8d8c8773 authored about 3 years ago
STY

42f287b35b1f087522e54798414fe69124ac19e8 authored about 3 years ago
MAINT: stats: separate UNU.RAN functionality to its own submodule (#15083)

The new submodule is stats.sampling

2c279c76471d997068fe656b2ac90163186cde75 authored about 3 years ago
STY: PEP8 fixes

4a18ec7f77c5a6998b530d59f4573baf525bfe5e authored about 3 years ago
ENH: Add orthogonalize argument to DCT/DST

ce5ec7f239fa0455297db54c3e336c976898eb1d authored about 3 years ago
TST: switch some tests to relative rather than absolute tolerance

4e03f99f3c06e7ebf8815fdbd6e5685ff0c831e2 authored about 3 years ago
properly typeset norms (review ilayn)

a0d2281aa1df947f79159f76b6e60bcc00dd4fef authored about 3 years ago
ENH: allow p>0 for minkowski-distance

939e9fd4266d16644905734efac0ab1a9c24411f authored about 3 years ago
Merge pull request #15099 from andyfaff/bestx

MAINT: ScalarFunction remember _lowest_x/_lowest_f

1ed13610f7d868441cccc76072a9659c49f3cf4c authored about 3 years ago
TST: Remove ``_asert_within_tol`` helper function

``_assert_within_tol`` provided a wrapper for ``assert_allclose``. This behavior
is already avai...

1bc855f5c61f904e9281b197efcd63a4e82861a8 authored about 3 years ago
TST: ScalarFunction._best_f

8ab35917271fd965ba76a6c8e319b79d7957d2e0 authored about 3 years ago
MAINT: ScalarFunction remember best_x

229b15c3c58a0d596fd8dc3bb8fb2fd40dbc75c4 authored about 3 years ago
Merge pull request #15096 from tylerjereddy/treddy_forward_173_notes

MAINT: forward port 1.7.3 relnotes.

40fc5b3cb67f2491e7a19fa43d917acbde4ab3a0 authored about 3 years ago
MAINT: forward port 1.7.3 relnotes.

57269d42c3e0fd6407389a5810640dfa93db9e0d authored about 3 years ago
MAINT: update gitignore to ignore private directories

[skip ci]

1185bdd78be37255742b2b8c48be1f826b84f47d authored about 3 years ago
TST: Review test tolerances

623f6f4efab659494750799bad3920098d7c0cf3 authored about 3 years ago
STY: Fix whitespace around operators

192c76806c8d1e7d0e996b985e067976b3a48c52 authored about 3 years ago
Merge pull request #15084 from Smit-create/14360_13

MAINT: Include `scipy.io.matlab` in public API

57bf4d674c6d31ce5e070498c8cbdc0f2ea8c8d6 authored about 3 years ago
Merge pull request #15086 from tupui/bounds_discrepancy

BUG: out of bounds indexing in stats.qmc.update_discrepancy

4158f28fd910850c325698a4226d00912aedc1c6 authored about 3 years ago
DOC: remove `conda develop` from quickerstart dev doc page (#14839)

[ci skip]

Co-authored-by: Ralf Gommers <[email protected]>

d18b2a4c23b12a007bd5b2a1cd5a541221e4934e authored about 3 years ago
TST: Review ``_assert_within_tol`` positional arguments

``_assert_within_tol`` is often called with positional
arguments that end up being filled into ...

7104f8f9020a90b51d25034f68651425f9a6862f authored about 3 years ago
BUG: out of bounds indexing in stats.qmc.update_discrepancy.

Co-authored-by: 99991 <[email protected]>

0ead4313fc9db34c7a929069c9327e41e57cc889 authored about 3 years ago
MAINT: `io.matlab`: Use renamed modules and add deprecation warnings

d6c7c0f6c17cd9bc89d8181b3eb0038d9c6f0b76 authored about 3 years ago
MAINT: Rename `io.matlab` modules and make them private

262b7f7ca2ffa2423e08771c323007ccda23a1b1 authored about 3 years ago
MAINT: Revert `_matlab` to `matlab`

da7ba1254931406b6df6f4d70e6392bee4120727 authored about 3 years ago
MAINT: simplify UNU.RAN api in stats (#15035)

* MAINT: simplify UNURAN interface

abafdff0a0f5af52d7104e860ea9ac6a8610cd95 authored about 3 years ago
MAINT: update `stats.iqr` for deprecated `np.percentile` keyword (#15078)

8dd161d14e14dff6ecea82fbaefd2b6460bb0d38 authored about 3 years ago
DOC: sparse.linalg: Fixed incorrect comments when the initial guess is non-zero

b4c87b74b0f0ae485254a22279da439557fe93f8 authored about 3 years ago
Merge pull request #15066 from h-vetinari/gcc5

CI: bump gcc from 4.8 to 6

296b5502788af19409fc543bc32fa8e840cc4f9f authored about 3 years ago
DOC: Add warning to dct documentation about norm='ortho' (#15041)

1022323f9744c36148e3422f97152d40ce0ccd94 authored about 3 years ago
Merge pull request #15054 from h-vetinari/wminkowski

MAINT: Remove wminkowski

6ed2f3b1da3b115fc6f7d860c952d347737c1325 authored about 3 years ago
Merge pull request #15053 from h-vetinari/skips

TST: Add some test skips to get wheel builder CI green again

2d4277cb295b52c77e7d242f8d0118eff7171a9a authored about 3 years ago