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github.com/scipy/scipy

SciPy library main repository
https://github.com/scipy/scipy

Merge pull request #15269 from rgommers/levystable-setup

BLD: add setup.py for `stats/_levy_stable`

fd5b29e00667508bd650e155095801460bd350d7 authored about 3 years ago
Merge pull request #15275 from Smit-create/fix_import_signal

MAINT: Fix imports in `signal._signaltools`

bcd6f5f34690b4ecf03be17b9e622d7742ee792e authored about 3 years ago
MAINT: add `_moduleTNC` to gitignore

62ca30e80f9e68bc161e14ee6fc6d65f33aa4e0d authored about 3 years ago
MAINT: import from source files

aed966349f8995a79f1b97646ae4e88fee538458 authored about 3 years ago
DOC: fix docstring in _cdf() function of _multivariate.py

See issue #15252
Function computes the multivariate cdf, not the log of the same.

441b63cb39ab400afb24a6d1a320bcd2f9bbf801 authored about 3 years ago
Merge pull request #15270 from rgommers/moduletnc-underscore

MAINT: rename `moduleTNC` extension back to `_moduleTNC`

bdefc817a8b821005c003111dc801e3d4931394e authored about 3 years ago
Merge pull request #15271 from rgommers/propack-testtol-bump

TST: slightly bump test tolerance for a new lobpcg test

97cc68a82076e3ae9e8b1909bfd29f742c207fbe authored about 3 years ago
TST: slightly bump test tolerance for a new lobpcg test

This was failing in the Meson build due to slightly different
build flags:
```
scipy/sparse/lina...

f0cf0d1b04e5816b968b97ea06758603f0f6f68e authored about 3 years ago
MAINT: add `M_PI_2` and similar defines if they are missing

I ran into this in the Meson build. When building with `std=c99`
(which happens to be the defaul...

ba5807741cc6440419def703f31d396f0fd7e792 authored about 3 years ago
CI: remove coverage usage from Windows jobs (#15266)

We seem to be measuring coverage on all jobs, and it remains quite
flaky. It is not necessary t...

046107194d34ea0e5706d79cce32ea4253b180c1 authored about 3 years ago
MAINT: rename `moduleTNC` extension back to `_moduleTNC`

The underscore was recently removed, see gh-14882.
This change is undesired, because it's a priv...

d9e974e9c68dc990b327431e58ec088a0ff7fae9 authored about 3 years ago
BLD: add setup.py for `stats/_levy_stable`

Closes gh-15245

de47790bd1b210b929654295eee8ad7237dc48bb authored about 3 years ago
Merge pull request #15234 from mdhaber/fix_slow_tests

TST: stats: mark very slow tests as `xslow`

efbcc920f0b80e986e05b9a277361a18730a24ee authored about 3 years ago
Merge pull request #15220 from WarrenWeckesser/dep-warnings

BUG: sparse.linalg: Fix deprecation warnings.

f290778749003c09769bd21439620048fab2cdc5 authored about 3 years ago
TST: stats: xslow very slow tests

c8bca9b5c8f77bd31bc1002589746b2d935501b0 authored about 3 years ago
Merge pull request #15255 from Smit-create/fix_distutils

MAINT: Remove `distutils` usage in `runtests.py` to fix deprecation warnings

cac0f0f5cd948d50b513d6c4db96360f97347e65 authored about 3 years ago
CI: pin `setuptools`

f7200cd60382457a987efb57f1ca775bddfc9963 authored about 3 years ago
MAINT: Remove distutils to fix deprecation warnings

2000927302602cdcfb939bc7f78911233f39f0f2 authored about 3 years ago
Merge pull request #15256 from tylerjereddy/treddy_issue_15254

MAINT: use PEP440 vs. distutils

31c8ba4f20ec04737356a740a9a2c43a064f87ff authored about 3 years ago
Merge pull request #15261 from timleslie/hausdorff-tweak

DOC: Add inline comment in Hausdorff distance calculation

d9345029952ed06dfe035b963e29f586604636c7 authored about 3 years ago
DOC: Add inline comment in Hausdorff distance calculation

a8d69d61d29b2da30aab65ed8eb844c185d79bd5 authored about 3 years ago
ENH: stats: add masked array support to `_axis_nan_policy_factory` decorators (#15239)

Co-authored-by: Tirth Patel <[email protected]>

0846912f51a3583a1f394f1397eef54191592baf authored about 3 years ago
MAINT: use PEP440 vs. distutils

* version checking in a PEP440-compliant manner is
more robust than using `distutils` for this p...

60d5ee3955bd3ff5982a08e8d64ec8b5f5f62dc9 authored about 3 years ago
ENH: improvements to the Stable distribution (#9523)

* Revert to branch base commit for future rebasing.
Re-add changes.
Reformat to less than 79 c...

e569c7a2d8d53a976b94a0cd984db469f7572a4f authored about 3 years ago
ENH: stats: Make `kappa3.stats` work with array shape (#15140)

* ENH: Make kappa3.stats work with array shape

Co-authored-by: Matt Haberland <mhaberla@calpo...

52e4ab2b1dc7e18dd148cbb8b59254de2f44a26f authored about 3 years ago
STY: sparse: remove extra blank line to fix lint failure in master (#15240)

0e35a094f04db9383959b1c1298abdff9d39cc67 authored about 3 years ago
Merge branch 'master' into mc_test

fdf56ca32167c16eb3f9a0e5576384c2995c73d0 authored about 3 years ago
BLD: update setup.py for Python 3.10 (#15236)

* BLD: update pyproject/setup for Python 3.10

* Revert unnecessary changes

9021bb77aede7990a055531017f77daa7fa63e92 authored about 3 years ago
BUG: minimize should work with a scalar closes #15228 (#15229)

* BUG: minimize should work with scalar

* Update scipy/optimize/tests/test_optimize.py

Co-...

4d0d7c195bd95a9213229203ae86efb32e2658f3 authored about 3 years ago
Merge pull request #15232 from stefanv/sparse-array-rmul

BUG: Add rmul for sparse arrays

d85cdca107e17c0ba19e214ab63ffe03efebfa16 authored about 3 years ago
Make 0th power of a sparse array/matrix return the identity with the same dtype (#15225)

* Make 0th power of a sparse array/matrix return one with the same dtype

* Make simpler test

d11a3d9906dd7b83b3c6bce6a6b37502eba99bea authored about 3 years ago
Add rmul for sparse arrays

Closes #15210

5bae3a4e2e0aa1221bdb1594a4fbaeb0226ec377 authored about 3 years ago
Merge pull request #15214 from mdhaber/resize_propack_tests

TST: sparse.linalg: store only PROPACK test matrices; generate reference results

5dc957a2ca7d843923b42e6eb504f06be255881f authored about 3 years ago
Merge pull request #15223 from andyfaff/gh15208

3da3fb3de8beffc79797b7b62ea3c98cc8075d2e authored about 3 years ago
Merge pull request #15219 from david-zwicker/patch-1

b56cb85ff16502a5564e1cfc08a04281a46e44f0 authored about 3 years ago
DOC: x0->x for finite_diff_rel_step docstring

a7d4b1755f7a8ae88f6c421314dbd68c34c2dab1 authored about 3 years ago
Merge pull request #64 from mckib2/update-propack-commit

ENH: update PROPACK submodule commit hash

f8a09bb1e17600170f15ea99e1cbb715263f0c61 authored about 3 years ago
Corrected docstring of ndimage.sum_labels

The example in the docstring of the function `ndimage.sum_labels` still used `ndimage.sum` inste...

2b02fab65f06f7e8f4d8f458b9231bfcb2314c6e authored about 3 years ago
BUG: sparse.linalg: Fix deprecation warnings.

Attempting to use `scipy.sparse.linalg.eigen.arpack` or
`scipy.sparse.linalg.dsolve.linsolve` re...

2d70d154086bf6fdce7718d9e4ab2486b9c204e1 authored about 3 years ago
Apply suggestions from code review

e5997e0fe574cb9dca580c827d77de5ad2c5af0e authored about 3 years ago
ENH: update PROPACK submodule commit hash

22e7608905d61673b268a9b1f7a3d14d37fabacb authored about 3 years ago
Update scipy/sparse/linalg/tests/test_propack.py

5885287ed3126a15720baafccb1d3791847f2dfe authored about 3 years ago
Apply suggestions from code review

8e94d387dcc2aa1071350f52f2b76a367162b272 authored about 3 years ago
ENH: stats: batch permutation t-tests

1233716a02955d8116c0e46914b5ac199414218a authored about 3 years ago
MAINT: stats: more concise _batch_generator

1a08088cd6b02ae469a47b4571b8c94244b3caa4 authored about 3 years ago
TST: sparse.linalg: store only propack test matrices; generate reference results

a7b17d784592a7546f82598d0ba412bcdbbca4d5 authored about 3 years ago
BUG: io: `AttrDict` in `_idl.py` should raise `AttributeError` on missing attributes. (#15171)

Why? Consistency.

As noted in [the Python docs](https://docs.python.org/3/reference/datamodel...

1474e4c4f7a934d2390fbc259def0ba2cc3526a1 authored about 3 years ago
Merge pull request #14877 from alexandschaefer/ndimage-convolve-documentation

DOC: ndimage convolve origin documentation (#14745)

f3d5a3cac64e5e66cb7e17bb800145a5dc8e53d4 authored about 3 years ago
Merge pull request #15205 from WarrenWeckesser/gh-15195

BUG: stats: Fix spurious warnings generated by several distributions.

09b8d942eec9f1692aef870d4fcede4dc83c3049 authored about 3 years ago
Merge pull request #15001 from zhaog6/testcases

ENH: sparse.linalg: More comprehensive tests (Not only for 1-D Poisson equations)

dc05d1c49742c5d15ff8628a852299653fc84789 authored about 3 years ago
Merge pull request #15202 from WarrenWeckesser/cxx-externc-cleanup

MAINT: special: Don't use macro for 'extern "C"' in strictly C++ files.

62bdc88621aaf0194503ecd712dfee817da153d0 authored about 3 years ago
Merge pull request #15207 from zhaog6/sparseTraceExpr

MAINT: sparse.linalg: Using the interface with the trace of sparse matrix

4290ecba41232190610ef779f35d80cd7895558c authored about 3 years ago
Merge pull request #15176 from WarrenWeckesser/special-namespace-cleanup

BUG: special: Clean up some private namespaces and fix `special.__all__`

6a1a3293ae085d1864be22e9da957d851e669d47 authored about 3 years ago
BUG: special: Clean up some private namespaces and fix `special.__all__`

Before this change, `scipy.special.__all__` contained duplicated names.

From both `_ufuncs` and...

ac34e0fd29f9a6766ab985e2679d540a8c885bf6 authored about 3 years ago
MAINT: sparse.linalg: Using the interface with the trace of sparse matrix

170d6efa549c89fcab61259354cd35bcdb7bf33b authored about 3 years ago
BUG: stats: Fix spurious warnings generated by several distributions.

Make a few small changes to ensure that spurious warnings such as
`RuntimeWarning: divide by zer...

66763bfa86f5a33b858e9ec1c057e190f0036f4b authored about 3 years ago
Merge pull request #15196 from WarrenWeckesser/cosine-gengamma-endpoints

BUG: stats: Fix handling of support endpoints in two distributions.

f34de3a87010bebf6cc1e9474dc58d315d75f52d authored about 3 years ago
MAINT: special: Don't use macro for 'extern "C"' in strictly C++ files.

The files _faddeeva.cxx, _wright.cxx, and ellint_carlson_wrap.cxx
are strictly C++ files. They ...

e23e3d337a96feda4013978db85973a9c5aabca3 authored about 3 years ago
Merge branch 'master' into cosine-gengamma-endpoints

9b40a2e8520e24f7f845d64530ab3fe8152af279 authored about 3 years ago
Merge pull request #15197 from rgommers/dependency-updates

MAINT: build dependency updates

202d03c5fdc7228bc94463dc924ef258fbf5d84f authored about 3 years ago
Merge pull request #15194 from WarrenWeckesser/recipinvgauss

BUG: stats: Fix numerical issues of recipinvgauss

efffb119c5ec56a28a31ba29d8259fa1aa51b033 authored about 3 years ago
Merge pull request #15192 from WarrenWeckesser/replace-pytest-warns-none

MAINT: Replace use of `pytest.warns(None)` with `warnings.catch_warnings`

2c777394cb03afbd95bb7fef7247cca3093da106 authored about 3 years ago
BLD: update pyproject.toml for s390x issue

Synced change from oldest-supported-numpy

b568120126712ca933300e4d2c7a57e43f528ada authored about 3 years ago
MAINT: update `np_minversion` in `__init__.py` to 1.17.3

The corresponding change in pyproject.toml was already made, this
just bring `__init__.py` in li...

de6b880d4bbb8649af6e88e316013282f7cb1d34 authored about 3 years ago
BLD: CI: undo setuptools pin (reverts gh-14974)

We want to not have pins in master, so we can detect new issues
quickly. The original bug in set...

69fc612e5c653bc713c96042e4e60985d06c6b36 authored about 3 years ago
BUG: stats: Fix handling of support endpoints in two distributions.

* `cosine.logpdf(-np.pi)` and `cosine.logpdf(np.pi)` would generate
`RuntimeWarning: divide by...

47e4ce6263e65c4879d78ea8048f8290c6a09c4c authored about 3 years ago
BUG: stats: Fix numerical issues of recipinvgauss

The distribution `recipinvgauss` had issues:

* The `pdf` and `logpdf` methods returned nan at x...

9524016cf1f1813cfdb0bacfd315854ea3064c35 authored about 3 years ago
TST: test DCT and DST for given dtype

c9cdbf2804d092eb63dc66e885ca99af11f381e5 authored about 3 years ago
MAINT: Replace use of `pytest.warns(None)` with `warnings.catch_warnings`.

The use of `pytest.warns(None)` is deprecated in pytest 7.0.0.
The alternative suggested by the ...

3f5963083e637b1eadbfeae1d8a0783c8f2c414a authored about 3 years ago
Merge pull request #15184 from WarrenWeckesser/ci-rename-nightly

MAINT: CI: Rename 'Nightly CPython' job to 'NumPy main'

364f3a2178bd20078c7823e92e68e5cd0bd8fffc authored about 3 years ago
Merge pull request #15169 from Yosshi999/patch-1

DOC: fix formatting of Methods in multivariate distributions

6e05721f8fce9d1987f7d7ef2941d57009cbd8c7 authored about 3 years ago
MAINT: CI: Rename 'Nightly CPython' job to 'NumPy main'

'Nightly' can be confused with the repository
https://pypi.anaconda.org/scipy-wheels-nightly/,
w...

f60db1d378408ed555c4e2e75650381ba04ce422 authored about 3 years ago
Merge pull request #15188 from zhaog6/demo_lgmres

MAINT: sparse.linalg: Using more concise and user-friendly f-string with the demo file of LGMRES

acb6edebab9f68e0dc315b5a2d859f09c43b0560 authored about 3 years ago
MAINT: sparse.linalg: Using more concise and user-friendly f-string with the demo file of LGMRES

89c407a175e8d2dc788f14d352952d7e5dd5483a authored about 3 years ago
ENH: sparse.linalg: More comprehensive tests (Not only for 1-D Poisson equations)

49ef6106eb36bd089c2902d72bc26770f6ef89c3 authored about 3 years ago
Merge pull request #15182 from Armavica/principal

MAINT: fix typos principle -> principal

d634f179a008fe1d8448a0c84842821a85c8f38a authored about 3 years ago
MAINT: fix typos principle -> principal

4ccb0d1263d728e3c776f533bdd5fe9b3ea510d8 authored about 3 years ago
Merge pull request #15181 from WarrenWeckesser/fix-pytest-skip

BUG: The pytest decorator for conditional skipping is 'skipif'

55b338408dc55a5044af61dc700665e86d4a3b72 authored about 3 years ago
BUG: The pytest decorator for conditional skipping is 'skipif'

beba0580ac5cb4b3525cf38b636e04c18312e748 authored about 3 years ago
DOC: a small bug in docstring example of `lobpcg` (#15154)

Updating lobpcg docsting example and comments to underscore that components of the initial vecto...

bd4b7323acc3837dfa650c140348071a6919614b authored about 3 years ago
Merge pull request #15165 from peterbell10/numpy-import-ignore

MAINT: Avoid using del to remove numpy symbols in scipy.__init__.py

ff78e04b8a3028df17c1814af9520a25e839269d authored about 3 years ago
Merge pull request #15173 from rgommers/update-gitignore

MAINT: update .gitignore for two new generated files

ee43c5ef455b30e8b87b78da723c506e3af9a768 authored about 3 years ago
MAINT: update .gitignore for two new generated files

[ci skip]

c5aed2932ba8464be1c0a348c846b8cb67beaed8 authored about 3 years ago
Merge pull request #14718 from mdhaber/bootstrap_doc

5bfbe973ac849db94eb1bb42f4d51697afeed46e authored about 3 years ago
DOC: fix formatting of Methods in multivariate distributions

a2b9760b1137a8c200637407123b79f390897e3b authored about 3 years ago
Merge pull request #15168 from tylerjereddy/treddy_rel_190

REL: set version to 1.9.0.dev0

1c98aa98a55e2aaf2c15c16b47ee5e258bfcd170 authored about 3 years ago
DOC: 1.8.0 relnotes update (#15161)

* prepare the final release notes for SciPy `1.8.0`
as branching is now imminent

Co-authored...

f6a8729ac7924828d0ad348f93d418163f456133 authored about 3 years ago
REL: set version to 1.9.0.dev0

d5130e76229bd6b195ab84281e2ef8e5f4ab5d37 authored about 3 years ago
Merge pull request #14837 from zhaog6/lsqr_r2norm

DOC: sparse.linalg: Fixed incorrect comments when the initial guess is non-zero

d27d186fffa295b2251911ceaffab9f0ebfdbc4a authored about 3 years ago
ENH: rebased version of gh-14279 (#15157)

Addresses issue gh-2063 (currently closed, but unresolved). It adds the
callback function to th...

2fc2458c2f46dd59d9900d500a8dddd5066a4d71 authored about 3 years ago
BUG: Fix group delay singularity check (#13419)

* BUG: Fix group delay singularity check

Fixes #9310

* Removed irrelevant test

* Added ...

2461f2b9b6e7a4d424737b8bf87e4c238cbbc8ae authored about 3 years ago
MAINT: Avoid using del to remove numpy symbols in scipy.__init__.py

linalg and fft are deleted after being imported from NumPy because
they collide with the corresp...

e60d8c8d9620ff8d13c7619cc91a088ed39ae9cf authored about 3 years ago
ENH: stats: add general permutation hypothesis test (#13899)

This adds permutation_test, a function for performing a permutation test for user-provided stati...

c76bf898291bb82684aaa1e5b9988be884b1b4fe authored about 3 years ago
MAINT: streamlined kwargs for minimizer in dual_annealing (#13392)

This fixes so that all global optimization strategies uses
`minimizer_kwargs` as the arguments ...

e99be0020976ff3739111ca7880f7e82dd523c76 authored about 3 years ago
ENH: stats: Updates to `variation`. (#11754)

ENH: stats: Updates to variation.

* Moved variation to its own file.
* Added the parameter `...

c9dc8b834bdae711fdf53f5244fad518903d7872 authored about 3 years ago
Merge pull request #15159 from tirthasheshpatel/fix-tut-header

DOC: stats: fix a header in `stats.sampling` tutorial

87cd923d090cb4af6585acd5df4069f54b897a12 authored about 3 years ago
DOC: stats: fix a header in `stats.sampling` tutorial

ed579241d35793e42e5bc76fa19efd84abe3e3bd authored about 3 years ago
Merge pull request #14559 from charlotte12l/pythran_tests

WIP: TST: add tests for Pythran somersd

393a05ee927883ad6316b7092c851afea8f16816 authored about 3 years ago
Merge pull request #14342 from czgdp1807/savgol_even

ENH: make `savgol_coeffs`, `savgol_filter` work for even window length

9256b566f875f4646fe33dbc91d0ada2f4dab778 authored about 3 years ago
Merge pull request #14882 from andyfaff/tnc_gh14879

BUG: Convert TNC C module to cython

41e538fa04226ff4d22680341563cf792e236361 authored about 3 years ago