github.com/scipy/scipy commits | Ecosyste.ms: OpenCollective

TST: stats: fix: dist_name19 is not a distribution name

ef8d92bcb277ab9be3539e223e50d259f6569901 authored almost 3 years ago by Matt Haberland <[email protected]>

MAINT: stats: fit: PEP8 fixes, add fit to docs

f3768a99063c0635c8de0070839c568ef37989bb authored almost 3 years ago by Matt Haberland <[email protected]>

ENH: stats: fit: for discrete distributions, include only integers on plot horizontal axis

b29e86e274315efb13521c42246322a90044763e authored almost 3 years ago by Matt Haberland <[email protected]>

ENH: stats: fit: use distribution '_penalized_nnlf', complete docs

22bb04800525eb792894301d06adcac7bdbd20f4 authored almost 3 years ago by Matt Haberland <[email protected]>

ENH: stats: fit: fix plotting for continuous distributions

acfdcb9fe7a7521eaab9a08beac2fbba2dd9f49b authored almost 3 years ago by Matt Haberland <[email protected]>

ENH: stats: fit: added shape info for remaining discrete distributions

4c3bf398bcdf0781cc3287898f8a1b3c4f5f27c1 authored almost 3 years ago by Matt Haberland <[email protected]>

ENH: stats: add `axis` tuple and `nan_policy` to `kustosis` (#15422)

22e9f747c4b731f63a46477b057daf865c269aad authored almost 3 years ago by Tirth Patel <[email protected]>

ENH: stats: fit: add ShapeParams for dists, add tests

053579932f5805b0088100fa25523d357ea9f598 authored almost 3 years ago by Matt Haberland <[email protected]>

MAINT: DOC: analytics from analytics.scientific-python (#15401)

b0186c21432178fa6dc6656a61400380aa045daf authored almost 3 years ago by Pamphile Roy <[email protected]>

TST: stats: fit: add basic fit test

9dc0eb3dc8ac1419c726dad7bf3d1d8e8fd98afb authored almost 3 years ago by Matt Haberland <[email protected]>

MAINT: stats: fit: fix dist not instance of rv_*, empty shape_bounds

f255c863d0dcedb9b6f762113ee019e1bbee4199 authored almost 3 years ago by Matt Haberland <[email protected]>

Merge remote-tracking branch 'upstream/main' into fit_distributions

539463e170ff0f65dcbfb7e3083447a3fb70ee42 authored almost 3 years ago by Matt Haberland <[email protected]>

TST: stats: fit: unit testing

5ab0da3659726aaf3a5b49b5ca4ce96eae573aae authored almost 3 years ago by Matt Haberland <[email protected]>

BLD: meson: split pyx->c and Python extension build (#15407)

As discussed in https://github.com/rgommers/scipy/issues/31 and
Meson issue gh-8961, the curren...

958cc091542568abc862d39da0459a13d9c4a50f authored almost 3 years ago by Matthew Brett <[email protected]>

Revert "ENH: add `order` parameter to specify quaternion format (#15410)" (#15431)

This reverts commit d5fb8b0f5c5fbd4ab96072825c28c2bd79702e3d.

b219a449ae7ae81840460e0b7e5a5bb4a8740e97 authored almost 3 years ago by Peter Larsen <[email protected]>

ENH: add `order` parameter to specify quaternion format (#15410)

Co-authored-by: Pamphile Roy <[email protected]>

d5fb8b0f5c5fbd4ab96072825c28c2bd79702e3d authored almost 3 years ago by Peter Larsen <[email protected]>

TST: refactor deprecated assert_almost_equal and assert_array_almost_equal

c7b318fda71cd4fa6804ed8db028f4ee21562640 authored almost 3 years ago by Pamphile Roy <[email protected]>

ENH: faster hypercube check

fcdd1566ed8d8a68e925463f1dac9fdb24782cd9 authored almost 3 years ago by Pamphile Roy <[email protected]>

Merge pull request #15427 from Smit-create/fix_import

MAINT: Manage imports in `sparse.linalg`

cd9a2597b7ee399bf9dbdead0115607d442feced authored almost 3 years ago by Ralf Gommers <[email protected]>

ENH: stats: fit: add function for fitting discrete and continuous distributions

6620dd17ee39a5eabf687d3594ca0623bf8da4ec authored almost 3 years ago by Matt Haberland <[email protected]>

MAINT: remove unused imports

eeedbb767e10bcdc9a662a32960a9ea24a374be7 authored almost 3 years ago by Smit-create <[email protected]>

Merge pull request #15424 from lobpcg/patch-3

ENH: bypass LinearOperator in lobpcg for small-size cases

8f640fd997e0386bdd4525a03869c45c726ac3cc authored almost 3 years ago by Tyler Reddy <[email protected]>

Update lobpcg.py

as suggested

7f94e6f6ec14dda0ff1b650a27c9c7b5c8b6cdea authored almost 3 years ago by Andrew Knyazev <[email protected]>

Update test_lobpcg.py

authors removed as suggested

e8fe17caa81a579fee7142e5b37910eeb6ca6a3e authored almost 3 years ago by Andrew Knyazev <[email protected]>

Apply suggestions from code review

Co-authored-by: Pamphile Roy <[email protected]>

d7c851b7215719587ef8cb6113e174d2f0055449 authored almost 3 years ago by Andrew Knyazev <[email protected]>

Update scipy/sparse/linalg/_eigen/lobpcg/lobpcg.py

Co-authored-by: Pamphile Roy <[email protected]>

5f2bc10f47fe66a32901bec15493e469d4554f65 authored almost 3 years ago by Andrew Knyazev <[email protected]>

Update test_lobpcg.py

copy/paste from #15280

e477bab940324648c6f6e2fb53f0932dff19b11b authored almost 3 years ago by Andrew Knyazev <[email protected]>

Merge pull request #15400 from zhaog6/testgmres

MAINT: sparse.linalg: Move the test function of GMRES to the appropriate location and remove tes...

a671052acd56ab61470732834c1c20ced9a70b74 authored almost 3 years ago by Tyler Reddy <[email protected]>

Update lobpcg.py

06c011b7b5c3aa16b36ff77a110826bdfddb563f authored almost 3 years ago by Andrew Knyazev <[email protected]>

MAINT: stats: mode: fix negative axis issue with np.moveaxis instead of custom code (#15421)

7438fe5edfb565ff341fa6ab054461fcdd504aa2 authored almost 3 years ago by Matt Haberland <[email protected]>

Merge pull request #15416 from hoodmane/fix-pyufunc-wasm

BUG: Fix PyUFunc for wasm targets

f6d08ab169199466fd317aa92f90689488fb6fe0 authored almost 3 years ago by Tyler Reddy <[email protected]>

ENH: stats: add `rvs` method for `gennorm` (#15413)

* ENH: stats: add `rvs` method for `gennorm`

This PR adds a specialized random variate sampli...

ec2f2bf4156e8498a4e0c9bdb5b67f9de6cf6fdc authored almost 3 years ago by Tirth Patel <[email protected]>

ENH: integrality constraints for differential_evolution (#15392)

* ENH: integrality constraints for differential_evolution

3945f534239ff26fd5375299267a7df6279ad06b authored almost 3 years ago by Andrew Nelson <[email protected]>

BUG: Fix PyUFunc for wasm targets

In the Wasm ABI, the following code does not work:
```C
double func(double, double, double);
typ...

24367c042db4f7c74bba866dbd03aa6940bb9e53 authored almost 3 years ago by Hood Chatham <[email protected]>

Make signal functions respect input dtype. (#15366)

* Make hilbert and hilbert2 respect input dtype.

* add hilbert types test

* fix hilbert dt...

897087cf6ed3f7a5864513cc15ab5f288b94c11b authored almost 3 years ago by Luigi Cruz <[email protected]>

Merge pull request #15406 from pmla/rotation-random

e0a749f01e79046642ccfdc419edbf9e7ca141ad authored almost 3 years ago by Pamphile Roy <[email protected]>

Merge pull request #15408 from pmla/rotation-negative-weights

934f63f9b806de48e9fca1a2c3699bdab5d24e8b authored almost 3 years ago by Pamphile Roy <[email protected]>

check for negative weights in `align_vectors`

93ab381d8dd4b4548acaca6d4d447d4e1fcfc5a2 authored almost 3 years ago by pmla <[email protected]>

Merge pull request #15402 from ev-br/update_pip_quickstart

DOC: update pip_quickstart (submodules)

2caf9181a72241c110f0ac3c504dc3aa58a433cc authored almost 3 years ago by Tyler Reddy <[email protected]>

Update doc/source/dev/contributor/quickstart_pip.rst

Use a single-line git submodule init & update

Co-authored-by: Pamphile Roy <roy.pamphile@gmail...

3c2114f5c2f4d94e1c483d9551792adfa71b13a7 authored almost 3 years ago by Evgeni Burovski <[email protected]>

use `Rotation.Random` instead of manual generation

5467f41fab0ceb1eeca62a2c63f810ebbcf68397 authored almost 3 years ago by pmla <[email protected]>

DOC: update pip_qiuckstart (submodules)

a6c08d31e587b252ad20879baf64e02e44cb6bed authored almost 3 years ago by Evgeni Burovski <[email protected]>

MAINT: sparse.linalg: Move the test function of GMRES to the appropriate location and remove test-independent code

d3036ec801705e91772da2def38effd9c8ec0867 authored almost 3 years ago by Gang Zhao <[email protected]>

ENH: stats: add `axis` tuple and `nan_policy` to `hmean` (#15399)

93939bb3dfeeb2a99ea23bba361fbf6df771155b authored almost 3 years ago by Matt Haberland <[email protected]>

Merge pull request #15396 from Carreau/no-git

DOC: `git://` protocol on GitHub is pending removal, change to `https://`.

960e53e5f796cd2a59ada02e75e70e118501eaec authored almost 3 years ago by Ralf Gommers <[email protected]>

Merge pull request #15397 from zerothi/pep440_missing_import

BUG: ensured vendored pep440 is imported

8efdc4666753090923ccd3ef55abe0cc7c4a130c authored almost 3 years ago by Ralf Gommers <[email protected]>

DOC: Git:// protocol on github pending removal.

Today is a brownout day and git will later be removed unless properly
configured to use ssh.

ht...

2f78d383edba32fcacf213d489403dc5bb1836a9 authored almost 3 years ago by Matthias Bussonnier <[email protected]>

BUG: ensured vendored pep440 is imported

This imports the vendored pep440 are now where they are
used.

The problem would arize when Pyth...

ad41bd2aac6d4a9ce5866db07c48d93b58df0dc0 authored almost 3 years ago by Nick Papior <[email protected]>

ENH: stats: add `axis` tuple and `nan_policy` to `gmean` (#14657)

* ENH: stats: add `axis` tuple and `nan_policy` to `gmean`

Co-authored-by: Pamphile ROY <roy....

465da5496a8dda099646e9d5947f24dfc0ec44e9 authored almost 3 years ago by Matt Haberland <[email protected]>

BUG: stats: use `axis` in `scipy.stats.tmean` (#12143)

* BUG: use previously ignored parameter axis

Co-authored-by: peterbell10 <[email protected]...

45209d5491d609b311954e236d349dc3adc27332 authored almost 3 years ago by siddhantwahal <[email protected]>

DOC: governance members moved to scipy.org (#15370)

d77302c049fcc2b65054d3d08728fe38a7f4b3d5 authored almost 3 years ago by Pamphile Roy <[email protected]>

ENH: optimize: LinearConstraint: add residual method

9ffce8046a7b9c429c29f4197e2b1ace372526ef authored almost 3 years ago by Matt Haberland <[email protected]>

ENH: optimize: LinearConstraint: add input validation

96a903c46a79614a213881a448f33b88993f4251 authored almost 3 years ago by Matt Haberland <[email protected]>

ENH: optimize: LinearConstraint: add defaults for lb, ub

c39682d478d0fa67df599e8b28b74cd98b0bcd51 authored almost 3 years ago by Matt Haberland <[email protected]>

FIX: Deconvolve method does not work with signals with more than 1D (#15130)

Co-authored-by: Pamphile Roy <[email protected]>
Co-authored-by: JuliaMelle01 <julia.melle...

d5497bdc3c1a5ce1432c8ca6f1ab92c87937f74d authored almost 3 years ago by JuliaMelle01 <[email protected]>

Merge pull request #15297 from mdhaber/bounds_improvements

ENH: optimize: improvements to `Bounds` class

b39dfaae25878aca834d2d4335e144d33dc34d74 authored almost 3 years ago by Nicholas McKibben <[email protected]>

MAINT: speed up rvs of nakagami in scipy.stats (#15360)

* MAINT: speed up rvs of nakagami in scipy.stats

1395332a9c75092c06c919a8dfad612af70590b0 authored almost 3 years ago by Christoph Baumgarten <[email protected]>

Merge pull request #15387 from WarrenWeckesser/fix-warnings

MAINT: Fix a couple build warnings.

2a216876e79f2531c0a4b952aaa243bec6949142 authored almost 3 years ago by Ralf Gommers <[email protected]>

Merge pull request #15388 from AtsushiSakai/improve_RectBivariateSpline_doc

DOC: interpolate: improve `RectBivariateSpline` doc

53796bfe5dc7ece5dde3d97c0f910c844d4e125c authored almost 3 years ago by Evgeni Burovski <[email protected]>

DOC: interpolate: improve RectBivariateSpline doc

cb6f3335887de65259f4dd016392f32d158e4e52 authored almost 3 years ago by Atsushi Sakai <[email protected]>

MAINT: stats: Remove an unused variable in spearman.f

80ba7642dd5ea38f1d1eee38f2378998e31d36b3 authored almost 3 years ago by warren <[email protected]>

MAINT: special: Remove unused variable in _smirnov function

fc02ebb08db1deb2324ec5a7954639a01520a84d authored almost 3 years ago by warren <[email protected]>

Merge pull request #15385 from yuanx749/fix-typo

DOC: fix typo, then/than

f916acd9443fd0c87a6d02d95195af3831574b2c authored almost 3 years ago by Evgeni Burovski <[email protected]>

DOC: fix typo

129705949d54450fdea54d2fc076312fedffa9ae authored almost 3 years ago by yuanx749 <[email protected]>

ENH: optimize: add integrality constraints for linprog (#15294)

* ENH: optimize: add `integrality` parameter to `linprog` to enable MILP

Co-authored-by: Matt...

91faf1ed4c3e83afe5009ffb7a9d18eab8dae683 authored almost 3 years ago by Nicholas McKibben <[email protected]>

Merge pull request #15371 from tirthasheshpatel/fix-unuran-warnings

MAINT: stats: fix unuran compile-time warnings

36ff3c7229441d0291c1abaabaad44dc17a3e4ae authored almost 3 years ago by Ralf Gommers <[email protected]>

ENH: expose submodules via `__getattr__` to allow lazy access (#15230)

f8cd431fe1e61eb1aafc45d2abcc3e109d447eb9 authored almost 3 years ago by Stefan van der Walt <[email protected]>

DOC: added example for morphology: generate_binary_structure, binary_dilation and erosion (#15244)

Co-authored-by: Pamphile Roy <[email protected]>

a0d44d5be19a84b4cb1984eb795dd0266f665c76 authored almost 3 years ago by Jan-Hendrik Müller <[email protected]>

ENH: stats: add weights in harmonic mean (#15347)

Co-authored-by: Pamphile Roy <[email protected]>

a1546047bc146bf3189fa905c3415475b0e47931 authored almost 3 years ago by Quentin Barthélemy <[email protected]>

Merge pull request #15378 from tupui/gmpy_update

MAINT: remove version pinning on gmpy2

e6a67032f394b39e0622a4264acac8ee7c0bb930 authored almost 3 years ago by Ralf Gommers <[email protected]>

MAINT: remove version pinning on gmpy2

a0f0aa871d8828e210e6f7f5eb30a1f4ff384cb6 authored almost 3 years ago by Pamphile ROY <[email protected]>

MAINT: stats: fix unuran compile-time warnings

21992eaa2d740b8cb080534ade6b7db821ff5c46 authored about 3 years ago by Tirth Patel <[email protected]>

CI: update trigger for Meson job from `master` to `main` (#15369)

[skip azp]

711b0aac2e2d4cad4d58c1a57e755ceab0b9d238 authored about 3 years ago by Ralf Gommers <[email protected]>

Merge pull request #15323 from rgommers/filter-stats-warnings-macos

MAINT: filter RuntimeWarnings in stats functions

6a56626e2661cf28b44767b26602f5c6a9341ec9 authored about 3 years ago by Evgeni Burovski <[email protected]>

Merge remote-tracking branch 'upstream/main' into bounds_improvements

8f7b87b0869c4f16f515f84f67287acc3eb0a447 authored about 3 years ago by Matt Haberland <[email protected]>

Merge pull request #15361 from zhaog6/utils

MAINT: sparse.linalg: Remove unnecessary operations

2d4f3af54775c4e1d38e04d9b82e448a78ec43ad authored about 3 years ago by Tyler Reddy <[email protected]>

MAINT: optimize, special, signal: Use custom warnings instead of print statements (#15259)

Co-authored-by: Pamphile Roy <[email protected]>
Co-authored-by: Tirth Patel <tirthasheshp...

4871f3d1c61bdb296ae03e3480f5f584f5c67256 authored about 3 years ago by Atsushi Sakai <[email protected]>

ENH: signal: Add Kaiser-Bessel derived window function (#15310)

Co-authored-by: Nils Werner <[email protected]>
Co-authored-by: Pamphile Roy <roy.pamphile@...

67fb9e9028253904e1896ee67a778407a1833f98 authored about 3 years ago by Atsushi Sakai <[email protected]>

MAINT: sparse.linalg: Remove unnecessary operations

5628849933f1ba002f34b88b4d3af24f68008b39 authored about 3 years ago by Gang Zhao <[email protected]>

Merge pull request #15352 from rgommers/pin-setuptools

BLD: put upper bound `setuptools<60.0` in conda environment yml files

c5b5b571df993ffc625a58c09dfb96cd61b47fec authored about 3 years ago by Tyler Reddy <[email protected]>

BLD: put upper bound `setuptools<60.0` in conda environment yml files

This is hopefully the last place where we have to add this upper bound.

[ci skip]

573cced3aa3ba8f18a08ec53d1bc28a8f3dcf612 authored about 3 years ago by Ralf Gommers <[email protected]>

MAINT: Move z/(z - 1) transform case for hyp2f1 into Cython (#15287)

This PR is part of the ongoing work to rewrite scipy's Gaussian
hypergeometric function impleme...

b9fc49bcfa392c35f3aa4050c971178d0f927da8 authored about 3 years ago by Albert Steppi <[email protected]>

ENH: Update `laplacian` function introducing the new `copy` option (#15251)

Co-authored-by: Pamphile Roy <[email protected]>

effaf8c82c822a24754b77890e2c394c5b8eaeca authored about 3 years ago by Andrew Knyazev <[email protected]>

MAINT: changed needed after renaming `master` branch to `main` (#15314)

Co-authored-by: Ralf Gommers <[email protected]>

8a64c938ddf1ae4c02a08d2c5e38daeb8d061d38 authored about 3 years ago by Jarrod Millman <[email protected]>

BUG: `highs-ds` returns memoryviews instead of np.arrays for the dual values (#15341)

* convert the memoryviews to np.arrays

f59866da0b854d2b76906667dad800755f05d59a authored about 3 years ago by Jonathan Helgert <[email protected]>

Merge pull request #15336 from rgommers/detailed-roadmap-update

DOC: update detailed roadmap

f8dfb13d731c7867477e8504d2830775607aaa07 authored about 3 years ago by Tyler Reddy <[email protected]>

Merge pull request #15330 from AtsushiSakai/issue_6772

a0e129fc3ba89fd81a5fa7e5e4d6aa2ec635a674 authored about 3 years ago by Pamphile Roy <[email protected]>

ENH: optimize: fix lint error

cbc20230ed4b4d3fbf48247ff989672da370b199 authored about 3 years ago by Atsushi Sakai <[email protected]>

Update scipy/optimize/_minpack_py.py

Co-authored-by: Pamphile Roy <[email protected]>

433f6278b23806319ba3e5d13f0bc4db5bacc8c3 authored about 3 years ago by Atsushi Sakai <[email protected]>

ENH: optimize: support undocumented option `full_output` for `optimize.curve_fit`.

01bb9cba30dd1facada9c87861abdd30968fcef5 authored about 3 years ago by Atsushi Sakai <[email protected]>

Update scipy/optimize/tests/test_minpack.py

Co-authored-by: Pamphile Roy <[email protected]>

9bcfe0c053a81d16397ae9b77a1820ec0c76f384 authored about 3 years ago by Atsushi Sakai <[email protected]>

Merge pull request #15328 from ev-br/interpolate_sparse_arrays

MAINT: interpolate: csr_matrix -> csr_array

dd27ac76554d2d8c01bb164039121ed1ac728f85 authored about 3 years ago by Tyler Reddy <[email protected]>

Merge pull request #15325 from rgommers/azure-faster

CI: reshuffle two Windows Azure CI jobs, and don't run 'full' on both

8a9789691dcaa79ef354949c9f1baf57974544c8 authored about 3 years ago by Tyler Reddy <[email protected]>

Merge pull request #15334 from tirthasheshpatel/fix-unuran-crash-2

BUG: stats._unuran: fix remaining attribute lookup errors

ae5f1057eea07747b99e5033390c094c9887f62e authored about 3 years ago by Ralf Gommers <[email protected]>

CI: pin numpy to 1.21.5 in the Azure refguide check job (#15335)

The `linalg.lapack` warnings is the problem outlined in gh-15327.
There is one other minor prin...

4cec825c4562ac4e8a69e79f547c6e2a80984e55 authored about 3 years ago by Ralf Gommers <[email protected]>

DOC: update detailed roadmap

[skip azp]
[skip github]

158d4b5cc38e54969ae3ac2dda44fc62d724198d authored about 3 years ago by Ralf Gommers <[email protected]>

BUG: stats._unuran: fix remaining attribute lookup errors

b624e4d9f0c95b8fd8730584bbdea1db864a0e42 authored about 3 years ago by Tirth Patel <[email protected]>

Merge pull request #15332 from rgommers/pin-numpy-in-circleci

CI: pin numpy to 1.21.5 for the doc build on CircleCI

948cb2fb66147f7e24cfdcd94b9fdb6aa8f1665e authored about 3 years ago by Ralf Gommers <[email protected]>

Merge pull request #15331 from tirthasheshpatel/fix-unuran-crash

BUG: stats._unuran: fix invalid attribute lookups

5daea717b1df738940785bf23e91639c217d64b2 authored about 3 years ago by Ralf Gommers <[email protected]>

CI: pin numpy to 1.21.5 for the doc build on CircleCI

xref gh-15327

[skip azp]
[skip github]

2a834b9740889b43e5f507fc5a9d787b250191b0 authored about 3 years ago by Ralf Gommers <[email protected]>