github.com/scipy/scipy commits | Ecosyste.ms: OpenCollective

MAINT: stacklevel=2

321b10e149e1b18a65c300e9a13ef8c8347e8241 authored almost 3 years ago by Andrew Nelson <[email protected]>

Merge pull request #15487 from caioagiani/patch-1

MAINT: typo in bsplines.py

d460f29107cb6ce2ba30c8f5ceaed8dd6d1531d0 authored almost 3 years ago by Evgeni Burovski <[email protected]>

MAINT: typo in bsplines.py

e8724adfcd63e18bb25ffd0470ffabcb906c0226 authored almost 3 years ago by caioagiani <[email protected]>

MAINT: optimize: milp: improve input validation of c

[skip ci]

c571d8d7e8e6955fa9e8ac035937a2228309f200 authored almost 3 years ago by Matt Haberland <[email protected]>

BLD: avoid warnings for `fprintf` in f2py-generated C code

These happen for a Mingw-w64 based Windows build, where
`%zd` is problematic.

Warnings look lik...

1da86171423e9d90723246eb4fdcd81d0aab7e82 authored almost 3 years ago by Ralf Gommers <[email protected]>

DOC: add note on coupling between npyrandom and npymath

286a5e8c781ed1daa0426cd8f9451459d4388a88 authored almost 3 years ago by Ralf Gommers <[email protected]>

BLD: unify `c_args for Cython-generated code, silence `%zd` warnings

c916231416e60dc03ffbf35eb91b921d54d98865 authored almost 3 years ago by Ralf Gommers <[email protected]>

BLD: meson: add `-lm` to add C extensions in a portable manner (#126)

See https://github.com/scipy/scipy/issues/15414, where it turned
out we were missing `-lm` in t...

9c2c919f64142caa6ce0280f782f3211c04d924c authored almost 3 years ago by Ralf Gommers <[email protected]>

MAINT: squash some build warnings from `signal/_bspline_util.c.in`

8185844d40fbb6f67ea2a5d02d9851433644dd62 authored almost 3 years ago by Ralf Gommers <[email protected]>

BLD: silence `-Wempty-body` warnings due to f2py callstatements

Warnings look like this (many times):
```
scipy/linalg/_flapackmodule.c:105675:60: note: put the...

0147fde3892cdba7f2c3a8bafdd6abf9e03f13a5 authored almost 3 years ago by Ralf Gommers <[email protected]>

Adapt dev.py to Windows install stages (#15449)

[skip ci]

Co-authored-by: Ralf Gommers <[email protected]>

93b1ac40847e0080cb28c4400a5366f8ccd084c4 authored almost 3 years ago by Matthew Brett <[email protected]>

FIX: PROPACK MKL compatibility (#15249)

* FIX: add G77 wrappers to PROPACK build

* BLD: point PROPACK to fork branch temporarily

*...

392f3a74d8b9fb42d9cdf19d6ee3da1ff1c47ad6 authored almost 3 years ago by Nicholas McKibben <[email protected]>

Merge branch 'milp_rebase' of github.com:mdhaber/scipy into milp_rebase

b1c3f0d0f8d802bcf53c1493ff0f62b830682afe authored almost 3 years ago by Matt Haberland <[email protected]>

MAINT: stats: update deprecation warning version information

547d1bb522562a1ba38961d13932fffc2bb92edf authored almost 3 years ago by Matt Haberland <[email protected]>

Merge pull request #15469 from Smit-create/distutils_2

MAINT: Remove `distutils` usage

6606c2ef0ffac52faf0dc712937d2f0588ea39e5 authored almost 3 years ago by Ralf Gommers <[email protected]>

MAINT: optimize: milp: update error messages

[skip ci]

131c4e78b3f093ad3d415ebcc1fb42bbbde72470 authored almost 3 years ago by Matt Haberland <[email protected]>

Merge remote-tracking branch 'upstream/main' into milp_rebase

15d903992ccd23757bc41c982508d232e9edabf1 authored almost 3 years ago by Matt Haberland <[email protected]>

Merge pull request #15475 from mdhaber/linprog_status_message

ENH: optimize: linprog: improve HiGHS status/message handling

22f66bbd83867459f1491abf01b860b5ef4e026e authored almost 3 years ago by Nicholas McKibben <[email protected]>

MAINT: Remove `distutils` usage and add `newer`

f2ccee6761ddcdde2c6502146ca1b37730d46d6d authored almost 3 years ago by Smit-create <[email protected]>

ENH: stats: add `axis` tuple and `nan_policy` to `skew` (#15472)

388b42a6391c7ea4f818e9a315cd421b17316a0e authored almost 3 years ago by Tirth Patel <[email protected]>

STY: stats: fit: PEP8 newline at end of file

a84e49ea3e4c15946f0cc77d2a150e20f6365c1c authored almost 3 years ago by Matt Haberland <[email protected]>

ENH: stats: fit: for small `data`, plot individual points for continuous distributions

29f74e4cceb1875307fd51d8097eb2043e46242d authored almost 3 years ago by Matt Haberland <[email protected]>

TST: stats: fit: add proposed tests

03f462a6a11347e6c991638159b2ba228a967f23 authored almost 3 years ago by Matt Haberland <[email protected]>

ENH: stats: fit: add x/y labels to plot

e65bd83aee9729995808717b405fb50b023c580a authored almost 3 years ago by Matt Haberland <[email protected]>

ENH: stats: fit: replace FitResult nllf and objective_val attributes with proper nllf method

7259746a6f09b47c064a73cf2db042bab6dfd573 authored almost 3 years ago by Matt Haberland <[email protected]>

MAINT: optimize: adjust error messages after updates to LinearConstraint

9b5badf8cbde5ccb5b7c4bc5aac2f6d9382884d1 authored almost 3 years ago by Matt Haberland <[email protected]>

Merge remote-tracking branch 'upstream/main' into milp_rebase

01e09635a1800b9a52d6a8d976aaa07043234344 authored almost 3 years ago by Matt Haberland <[email protected]>

Merge pull request #15394 from mdhaber/LinearConstraint_improvements

ENH: optimize: improvements to `LinearConstraint` class

e15eb71690c9d75cde82af7b87d8cbbdef1526ba authored almost 3 years ago by Nicholas McKibben <[email protected]>

MAINT: optimize: linprog: skip unnecessary part of test_optimize_result for HiGHS methods

5852ae693d3a83a9d550de3cd371f10c2f7c0329 authored almost 3 years ago by Matt Haberland <[email protected]>

Apply suggestions from code review

[skip actions][skip azp]

66db4c5b18764701aced437da430129654591f0a authored almost 3 years ago by Matt Haberland <[email protected]>

Apply suggestions from code review

[skip actions][skip azp]

Co-authored-by: Pamphile Roy <[email protected]>

764b47730025cd42ab410627ee31f251dd1065ed authored almost 3 years ago by Matt Haberland <[email protected]>

MAINT: optimize: milp: adjustments per reviewer comments

[skip actions][skip azp]

a91f7edbef0c6ee2fb77558cb0247ea5d9c74049 authored almost 3 years ago by Matt Haberland <[email protected]>

STY: optimize: linprog: fix PEP8 issue

56accc2720e95c08e980684a954383a99a537ba8 authored almost 3 years ago by Matt Haberland <[email protected]>

TST: optimize: fix HiGHS status/message tests; add tests

9146c809885d8cea2f1db0e33697d76c3c8c8dcd authored almost 3 years ago by Matt Haberland <[email protected]>

TST: optimize: linprog: test improved HiGHS status/messages

cbd9acf50c9c69aabc045c3773c85c201dca4041 authored almost 3 years ago by Matt Haberland <[email protected]>

DOC: FIX: grammar

887760e8c0e5e75892627950e61ab712a0881edd authored almost 3 years ago by Nicholas McKibben <[email protected]>

DOC: scrambling with LMS+shift and fix biblio

834b55bce09cee32f72425f660f2dd8a96610c4b authored almost 3 years ago by Pamphile Roy <[email protected]>

MAINT: remove a hardcoded `-mmacosx-min-version=10.9` flag

This was added in gh-12227, and is no longer necessary since
our minimum version is 10.9

ef3e1424ac3aa3f055e15caf7c3654e3381a8ec4 authored almost 3 years ago by Ralf Gommers <[email protected]>

CI: add `conda-build` to `environment_meson.yml`

See if this fixes the macOS deployment target warnings

[skip azp]

73b114fdd6a275f3f5c7e28562e28541522e9f09 authored almost 3 years ago by Ralf Gommers <[email protected]>

Merge pull request #15466 from tacaswell/fix_gcc11-1

MAINT: fix compile errors with CPython 3.11

3bdce7aee0c5be623f83e98a16b4ad1af2ac66d7 authored almost 3 years ago by Ralf Gommers <[email protected]>

Merge pull request #15465 from qbarthelemy/doc_weights

093df21fde4290d5c5adc987c948550d3dc694de authored almost 3 years ago by Pamphile Roy <[email protected]>

DOC: stats: apply other suggestions

Co-authored-by: Pamphile Roy <[email protected]>

8d6be561368d882ee918eae436fdf90960a2e74c authored almost 3 years ago by Quentin Barthélemy <[email protected]>

DOC: stats: apply suggestions

Co-authored-by: Pamphile Roy <[email protected]>

e0079225b3fd375e747edaf63561dc3e2e5e5474 authored almost 3 years ago by Quentin Barthélemy <[email protected]>

FIX: compile errors with gcc 11.1

true/false are treated as literals not identifiers.

70bdf0869d948b90d1dafe2c7ef130c3356ecb4a authored almost 3 years ago by Thomas A Caswell <[email protected]>

MAINT: improve updating kwd

cfc8f791f7d735a8b6541cfc6fe7243ee27c98e6 authored almost 3 years ago by Andrew Nelson <[email protected]>

MAINT: Try to detect scipy path in `runtests.py` while not building (#15440)

This makes `python runtests.py --no-build` more robust.

Also remove `distutils` usage in `dev...

a77a9e14e9c3b813a3685e2c5b39967aa99eed82 authored almost 3 years ago by Smit Lunagariya <[email protected]>

DOC: stats: correct doc display

56869131c8e0a0d6e1af86cc1a000c61e83efcf6 authored almost 3 years ago by qbarthelemy <[email protected]>

DOC: stats: add weights in formulas and examples for gmean and hmean

22f42b3b76a9a7fef895ed5b5457a0f2841ed5b2 authored almost 3 years ago by qbarthelemy <[email protected]>

ENH: Support Bounds class in shgo (#15455)

d675e28bec0f3d6145ed6f4ed4f868c79b84cc66 authored almost 3 years ago by dschmitz89 <[email protected]>

Apply suggestions from code review

[skip ci]

85515f885a057babfc12f1af220a29f663bd126f authored almost 3 years ago by Matt Haberland <[email protected]>

ENH: optimize: linprog: improve status/message handling

396825b0c81005b281598e3ca68737b1fcd82b16 authored almost 3 years ago by Matt Haberland <[email protected]>

ENH: stats: frozen dist moment/interval need to accept n/alpha still

9fcf748862b4a96708e0ba531dffa0bb4a147833 authored almost 3 years ago by Matt Haberland <[email protected]>

DOC: stats: never mind... inherit pdf/cdf/rvs docstrings like every other distribution

6f2596584779b71a1551f8c77999068bfd705eae authored almost 3 years ago by Matt Haberland <[email protected]>

DOC: stats: add levy_stable pdf/cdf/rvs docstring

3a3727c022a361a0bc8a519ebc60e7de8124a5d9 authored almost 3 years ago by Matt Haberland <[email protected]>

TST: fix test

94f15c5f08f670dbc07e386ea66980da42e3723e authored almost 3 years ago by Andrew Nelson <[email protected]>

TST: fix test

91953556837883934febd8564019f7d4de9564c1 authored almost 3 years ago by Andrew Nelson <[email protected]>

CI: switch one macOS CI job from distutils to meson

[skip azp]

Co-authored-by: Harsh Mishra <[email protected]>
Co-authored-by: Smit-cr...

397964cf05765d109c0a8d2d8f23d45c8ab694a7 authored almost 3 years ago by Ralf Gommers <[email protected]>

TST: check for wrong constraint shape

82094a2e654288a74b7fd04e30cf164b5cbca8d4 authored almost 3 years ago by Andrew Nelson <[email protected]>

Merge branch 'permutation_t_batch2' of github.com:mdhaber/scipy into permutation_t_batch2

25c11f58934b97e113fc3c0f3924de1fd1e2c41c authored almost 3 years ago by Matt Haberland <[email protected]>

Merge remote-tracking branch 'upstream/main' into permutation_t_batch2

8582bfde04192f0c85ddd469af7b6009a96b2cfc authored almost 3 years ago by Matt Haberland <[email protected]>

Merge remote-tracking branch 'upstream/main' into check_dist_params

0b1aa73d5cd4b537e505e35d57a62b44b9b51b01 authored almost 3 years ago by Matt Haberland <[email protected]>

DOC: stats: help Sphinx locate stats.skewtest

[skip azp] [skip actions]

b78ad20ba83f7535f51809c9b7014f0df924c1b4 authored almost 3 years ago by Matt Haberland <[email protected]>

MAINT: optimize: milp: add _milp.py to meson.build

c53564b73d45d9972e39a32f04a957114badcbe1 authored almost 3 years ago by Matt Haberland <[email protected]>

TST: optimize: milp: add test file to meson.build

636465494b94a18fd6befd848e1506a2e3590b54 authored almost 3 years ago by Matt Haberland <[email protected]>

MAINT: stats: move permutation_test into resampling methods section of docs

661846886bbdccedff7b47234fc34824b4f82c1b authored almost 3 years ago by Matt Haberland <[email protected]>

Merge branch 'mc_test' of github.com:mdhaber/scipy into mc_test

11b13e3cc125fdb49ea21e0a238f53c3e9c713fb authored almost 3 years ago by Matt Haberland <[email protected]>

STY: optimize: milp: fix remaining PEP8 errors

bbb4c9719c7f749e3c16196e225c8f42f025e71c authored almost 3 years ago by Matt Haberland <[email protected]>

ENH: Make dual_annealing work with Bounds class (#15453)

* ENH: Make dual_annealing work with Bounds class

Co-authored-by: Matt Haberland <mhaberla@ca...

54f23d4cdaf96a64866e5f63099016e8c0afc4a0 authored almost 3 years ago by dschmitz89 <[email protected]>

MAINT: optimize: milp: fix mypy, PEP8, and Sphinx issues

56a807febad3c2255a6a06d9f6b0bf950664d684 authored almost 3 years ago by Matt Haberland <[email protected]>

MAINT: add check for constraint shape. Also rename shapes of arrays involved with differential_evolution to match those used elsewhere

d737f58ce6d73534405f1f08fc56e76e651708e0 authored almost 3 years ago by Andrew Nelson <[email protected]>

ENH: optimize: milp: mixed integer linear programming

5158a1475c3ffe41abf83273701ae2d34a8d6d4c authored almost 3 years ago by Matt Haberland <[email protected]>

Merge pull request #15459 from burkh4rt/main

DOC: documents parameter `limit` for function `integrate.quad_vec`.

88dbe4d4d0f1c431f6910edbe9c1a1ea185fb54d authored almost 3 years ago by Tyler Reddy <[email protected]>

DOC: documents parameter `limit` for function `integrate.quad_vec`.

Description now aligns with that of `integrate.quad`. Closes #15415.

97b16b6b493c045652ec7d6c38048dfd5a4d0ffb authored almost 3 years ago by Michael Burkhart <[email protected]>

Merge pull request #15454 from rgommers/no-libnpymath-spatial

BLD: remove dependency on libnpymath from `spatial._distance_wrap`

ecb800f37bc6c6eb4f160cba34fec81932eaea70 authored almost 3 years ago by Tyler Reddy <[email protected]>

Apply suggestions from code review

b13ded2da8febb622e050e01c96aebe29c63a0d3 authored almost 3 years ago by Matt Haberland <[email protected]>

MAINT: stats: fix bug in nchypergeom._pmf with zero-size input

b95c9cc5d4d605277236874efa6b002ffd12340f authored almost 3 years ago by Matt Haberland <[email protected]>

MAINT: stats: fit: updates based on review

51f918188e886f8e73e0cfe967b0399f8446f628 authored almost 3 years ago by Matt Haberland <[email protected]>

Merge remote-tracking branch 'upstream/main' into fit_distributions

31a665fbf34ad558c836588fb5beb46c722eb02a authored almost 3 years ago by Matt Haberland <[email protected]>

Merge pull request #15442 from Smit-create/rg_120_1

MAINT: Fix meson build warnings on windows

b2a90cee324cb0e41b10d8ef65450d8f0ed0f025 authored almost 3 years ago by Ralf Gommers <[email protected]>

Merge pull request #15445 from mdhaber/rv_pxf

ENH: stats: add `nnlf` method for discrete distributions

12d18f519e5651d1074ab2bbbe774e7cb74f292a authored almost 3 years ago by Ralf Gommers <[email protected]>

Merge pull request #15451 from matthew-brett/finesse-dependencies

BLD: further refinement of Cython dependencies

596a6d7447f88b39f8a31ad49a8ee7255bc5f945 authored almost 3 years ago by Ralf Gommers <[email protected]>

BLD: remove dependency on libnpymath from `spatial._distance_wrap`

0d56839e63dca912418860204cc978494f54ce84 authored almost 3 years ago by Ralf Gommers <[email protected]>

LINT

9b069db0794ec3d6696d35ea1cd4a528667ce131 authored almost 3 years ago by Andrew Nelson <[email protected]>

MAINT: stats: silence mypy

3cb117132893fd83ada1fa6b476c3c707d789fb2 authored almost 3 years ago by Matt Haberland <[email protected]>

DOC

b6db686566fe4e4bb5d476fe6aecce6e78736dca authored almost 3 years ago by Andrew Nelson <[email protected]>

STY: fix indentation

6a5ecd43f4003b4e2a9f1e20affeb7f2725a35a0 authored almost 3 years ago by Andrew Nelson <[email protected]>

ENH: apply vectorisation to constraints

95ca99b9b08ce9570841ded49a0671d855012318 authored almost 3 years ago by Andrew Nelson <[email protected]>

Further refinement of Cython dependencies

e11bf1cf1a9f0e996e0ea5a31a7a53858eb94f9a authored almost 3 years ago by Matthew Brett <[email protected]>

MAINT: Fix build warning ([-Wpointer-to-int-cast])

9adc4c57850dc9268cda5d4a7f923874083d21f3 authored almost 3 years ago by Smit-create <[email protected]>

STY: Remove white spaces

bee010418b94ba87fbad4ea7539fa14c6deeb8b1 authored almost 3 years ago by Smit-create <[email protected]>

TST: stats: add tests for methods moved to rv_generic

c7d30f101234169898386356d292a50e93a80862 authored almost 3 years ago by Matt Haberland <[email protected]>

Merge pull request #15441 from syrte/patch-2

Fixed a typo in CubicSpline docstring

6d7b5c7c3a42fd9d1475daa51150e25f8af5dc87 authored almost 3 years ago by Evgeni Burovski <[email protected]>

Fixed a typo in CubicSpline docstring

Original text in the note section of CubicSpline docstring:
"Parameters `bc_type` and ``interpo...

167f5630a9565a5a8a1ba640372da93f6dd1bf45 authored almost 3 years ago by Syrtis Major <[email protected]>

MAINT: Fix uninitialized warning

af1c34af7a824426c7abe1d7b0985f1aed76aef3 authored almost 3 years ago by Smit-create <[email protected]>

MAINT: Fix platform specific warning

6615059e9d0899d1d9768407602b28eeeeeb3e3e authored almost 3 years ago by Smit-create <[email protected]>

ENH: differential_evolution vectorized kwd

e4e0e0d9a9e0e67bb29b4f03e58570faf8916203 authored almost 3 years ago by Andrew Nelson <[email protected]>

MAINT: stats: promote some rv_continuous methods to rv_generic

fc10a07bd05368f0b4ba16c52121b8e5b1a7f999 authored almost 3 years ago by Matt Haberland <[email protected]>

Apply suggestions from code review

995d321aa5bd2c0166716450bf29b2d7114ac8f1 authored almost 3 years ago by Matt Haberland <[email protected]>

MAINT: stats: fit silence mypy

62f01ea6b8a0133a7b93e4800f35c0887127d660 authored almost 3 years ago by Matt Haberland <[email protected]>

STY: stats: fit: additional PEP8 issues

05f725da454a72e794c9fd916f7d6ebfcc52b0de authored almost 3 years ago by Matt Haberland <[email protected]>