github.com/scipy/scipy commits | Ecosyste.ms: OpenCollective

MAINT: change dep warning

bb73650fbef2cfc696a2992008a3a112103078ea authored almost 3 years ago

MAINT: remove use of depricated keyword

e899080783ba2ff72da8f031fe18aa9b75cb5d8f authored almost 3 years ago

Merge branch 'dep_sym_pos_kwarg' of github.com:j-bowhay/scipy into dep_sym_pos_kwarg

5c1178d3a6038244eee67e97d5809a31f1484bf8 authored almost 3 years ago

STY: single tick in dep message

447081c13a8eb674c8c749409fdfcce7327f74e7 authored almost 3 years ago

TST: stats.fisher_exact: increase precision of reference values

fca903c883feff37e26ef0cb87c826266e63093e authored almost 3 years ago

TST: stats.fisher_exact: add tests

0edde654843b43ef72b81e750e0ccb90c51fbd0c authored almost 3 years ago

Update scipy/stats/_stats_py.py

8b3966d4eaadba588e4c19713e074d589e0f5390 authored almost 3 years ago

Merge branch 'gh4130' of github.com:mdhaber/scipy into gh4130

55b533dbeae0c6d9c461c5f98104e3ec21017ade authored almost 3 years ago

Merge remote-tracking branch 'upstream/main' into gh4130

30d4f827c2972e9b00701fda4918451a9fca8968 authored almost 3 years ago

ENH: stats.fisher_exact: simplify two-sided pvalue calc and fix gh-9231

1c84ef26e617881d2ef721d16b07bb6340e94d59 authored almost 3 years ago

STY: PEP8 line length fix

[skip actions] [skip azp]

278d15b9219786e351542d91975bfe2d0104c8f6 authored almost 3 years ago

DOC: fix doc build warning

[skip azp] [skip actions]

3ae494d72118c14ab0c603aab1b0bc0a7f290b6a authored almost 3 years ago

DEP: add actual DeprecationWarning for sym_pos-keyword of

scipy.linalg.solve

76508341ff3d504c8843b55388856c333b237091 authored almost 3 years ago

DEPR: remove k=None in KDTree.query (#15782)

k=None was deprecated in KDTree.query in SciPy 1.6.0. This PR removes it.

6660830eb7d7590d56f1377d27bf7ee97bb3adec authored almost 3 years ago

Merge pull request #15799 from h-vetinari/extradoc

DEP: add warning for documented-as-deprecated extradoc

447172d245181f3dcce01127c5d40ccbb8a668df authored almost 3 years ago

BUG: Adding parameter `scaling` to signal.stft() and signal.istft() (#15704)

* BUG: Adding parameter `scaling` to signal.stft() and signal.istft() (WIP)

As addressed in #...

672619a7d7812d7efc4584ef4104d54b56fa4cdd authored almost 3 years ago

DOC: stats.fisher_exact: add sampling condition to null hypothesis

[skip actions] [skip azp]

2715066d9ee9ee71cfded6ad271ca61cc0cbfb2f authored almost 3 years ago

Merge pull request #15797 from mkoeppe/boostorg_math_729

scipy/_lib/boost: Update to d8626c9d2d937abf6a38a844522714ad72e63281

5e6aa2dc90ee37a7034a2b6d9e4a5e4cef934f5d authored almost 3 years ago

DOC: fix typo in cython optimize example (#15768)

In the "full output" example, I think the return type should be `zeros_full_output`
not `brent_...

dde39b7cc7dc231cec6bf5d882c8a8b5f40e73ad authored almost 3 years ago

Update scipy/stats/tests/test_stats.py

Co-authored-by: Pamphile Roy <[email protected]>

c47e8ef889289a136d4c0137c2d07012af826fb5 authored almost 3 years ago

DOC: information about skip on CircleCI (#15813)

* DOC: information about skip on CircleCI.

ed8b55d7ffc8bef1964218b5baeb00792847a162 authored almost 3 years ago

ENH: stats.fisher_exact: improve docs and adjust fudge factor

e5682d33aec6dff83ec6ed43d21954fdecff3fc4 authored almost 3 years ago

DOC: Couple of single to double backticks (#15812)

Co-authored-by: Pamphile Roy <[email protected]>

071c5706280d73bb19e31beb64e1ac0a57d80f96 authored almost 3 years ago

DOC: stats.mood: validity only when observations are unique (#15810)

6b40114b49326063626c4caf3b27585d392dd44c authored almost 3 years ago

Merge pull request #15811 from Carreau/eval_all_bspl_bad_ex

DOC: fix evaluate_all_bspl example.

47973441a5809b7cf26a23414904f2d34242e789 authored almost 3 years ago

DOC: fix evaluate_all_bspl example.

1) the first argument of `evaluate_all_bspline` need to be an array and
not a list, or it cra...

e1377d5234f93663a0928091bb524414c047aaea authored almost 3 years ago

DOC/MAINT: remove `quad_explain` that has become irrelevant.

As far as I can tell this was originally written by Travis in 2001,
before IPython's `?` and Pyt...

a3e171fd1bae18429a7d32571c856693ba5979ee authored almost 3 years ago

scipy/_lib/setup.py (check_boost_submodule): README.md renamed to README.rst

c244332bed077d16b2aa93020e5b04ecc2fca3ba authored almost 3 years ago

DEP: specify version to remove dual_annealing argument 'local_search_options' (#15805)

Co-authored-by: Pamphile Roy <[email protected]>

4a3f1faa82008231ac3fd1bd833dcfd6d5ba5620 authored almost 3 years ago

DOC: error in TransferFunctionDiscrete example (#15803)

6c6fe02cb8534893704b66baea47ef8e3e9eb09f authored almost 3 years ago

DEP: sharpen warning message on >1-dim for optimize.minimize (#15804)

c6cb9b0f900ba99fbb061c74ca4e7f00a20a823a authored almost 3 years ago

DOC: Import Error in examples (#15802)

8cc7ca78c7611970b2173d83a26e8e0bd4a5091f authored almost 3 years ago

BUG: Fix input validation tests of signal.istft() (#15379)

* BUG: Fix input validation tests of signal.istft()

Fixes that `istft()` fails to early with ...

477b80bfb2a47d50a4214d5558df4037536aaba9 authored almost 3 years ago

add warning for documented-as-deprecated extradoc

2c242747c766a44b2edd9c96c4e446d44f0d07c9 authored almost 3 years ago

DEP: remove n_jobs from cKDTree (#15795)

e88830660dbd160d844b708e376c99c734cd6dd2 authored almost 3 years ago

scipy/_lib/boost: Update to d8626c9d2d937abf6a38a844522714ad72e63281

bf46cc21a8777c88732cf705591ec1942eaedfeb authored almost 3 years ago

MAINT: stats: give frozen distributions pdf or pmf, not both (#15794)

* MAINT: stats: give frozen distributions pdf or pmf, not both

70a76cbcea11d959bcfdf7ee9df983bfac30e170 authored almost 3 years ago

Merge pull request #15079 from ilayn/linalg_expm

ENH:linalg: expm overhaul and ndarray processing

94e98daabbad231fe519c4d32a1412a27253ad49 authored almost 3 years ago

BENCH: Add benchmarks for special.factorial/factorial2/factorialk (#15664)

ef53758efffec6cd8e225f54686894d1b54b8ba3 authored almost 3 years ago

DOC: add formula and documentation improvements for scipy.special.chndtr and its inverses (#15684)

[ci skip]

bb823e5b71e8d3a4d90e54d0b075cc5991d2333e authored almost 3 years ago

DOC: Add examples of integrals to integrate.quadpack (#15786)

a57eed153fc000112734cb8472c355e98b8fbd33 authored almost 3 years ago

MAINT: decorator for backward-compatible keyword renaming (#15624)

* MAINT: decorator for backward-compatible keyword renaming

Co-authored-by: peterbell10 <pete...

b2c7d01915b126a53e729f7db448baadab5eec12 authored almost 3 years ago

DOC: update macOS and Linux contributor docs to use Python 3.9 (#15788)

b9427e1b5d798f4c14ae9b6cbfec7d32dda15a46 authored almost 3 years ago

MAINT: stats: remove deprecated itemfreq (#15785)

5a94865ca97bd3237e234e68935f07ba7b517794 authored almost 3 years ago

BLD:linalg: Add _matfuncs_expm.pyx to meson.build

60f7e99d1655554efacd9d1c4999d8e8568e5bbf authored almost 3 years ago

TST:linalg: Tweaks to tests for the new expm()

d40fa4f80b8578a9e9b754e9012de5e21974cb57 authored almost 3 years ago

PEP8:linalg: correct spacing _matfuncs.py

f26a9d00f66266ac119af410b7888c8653cd5894 authored almost 3 years ago

MAINT:linalg: Fix access in pade structure

3d4f5dc843e04e047e2c6f8a7110f9dd945f2a00 authored almost 3 years ago

ENH:linalg: Typing stubs for expm cython funcs

48c5966b3960b63479a51d40b1b7d9c96c86d2e9 authored almost 3 years ago

BENCH:linalg: Adjust tests for new dense expm

93d9b56ecae681982d200c115819a48dd3ed3499 authored almost 3 years ago

MAINT:PEP8:linalg: Remove extra blank line

[ci skip] [skip ci] [skip azp]

a6f95fffdb409302b67b1ceb02abdc75ee083c16 authored almost 3 years ago

MAINT:linalg: Add cnp.import_array() to expm pyx file

41b9362fcad54fd6d0c74e4b0843497339027a1d authored almost 3 years ago

FIX:linalg: correct expm spurious array conjugation

876a1b57d11c9aba803869542e658ff4685ec263 authored almost 3 years ago

MAINT:linalg: allocate expm scratch array once at the start

5bb5fe9f1c398319f1a3f373bfe5ba2122d23b0b authored almost 3 years ago

MAINT:linalg: Confirm malloc() objects freed

de83d35c56fa01ad6255e8029f4a5ac50e3c90bb authored almost 3 years ago

ENH:linalg: Cythonized core expm functionality

9c1854e1bd8de2eb1393993927c7c899fdcaadd4 authored almost 3 years ago

MAINT:linalg: replaced sinch function for expm

196f522e33899d96fda12f30428cb6985058ec7d authored almost 3 years ago

MAINT:linalg: fixed the transposed gemm calls in expm

1b0678190415280bfd689c179525c92a0638c471 authored almost 3 years ago

DOC:add BLANKLINE to 3d example

ba356d9ca6cc1f74c0c9871d3346f22b51add383 authored almost 3 years ago

TST:linalg: add 2x2 array tests to expm()

89bad715c1d0f64ccf422c427d64297d2514d58a authored almost 3 years ago

MAINT:linalg: fix _norm1est call argument type

1bf2177acc502d9b9405abe542d504ea2948bc05 authored almost 3 years ago

MAINT:linalg: modify _sinch function for scalars

1e4793c8d4e6b9639e6018bf7a2d958ea7d12d13 authored almost 3 years ago

MAINT:linalg:Adjust array slicing for 2x2 arrays

74cdf624f83cede973b31500863c84077abfdb67 authored almost 3 years ago

MAINT:linalg: expm() code branching cleanup

e91e88ca9aa275aae2259db7a24692a4b9c1a80c authored almost 3 years ago

TST:sparse:linalg: Use sparse.linalg own expm in tests

4ef8e3d82925fc3bbd50ca040a9eec7ef5d413a2 authored almost 3 years ago

ENH:linalg: expm public API function

a0cd10b96e49f0123b367687f826cac267ad128d authored almost 3 years ago

CI:Pin pytest version to 7.0.1 on Azure (#15783)

b9c208b2714c878cc8846f1d0884a7b0072fd6ce authored almost 3 years ago

ENH: stats.pareto fit improvement for parameter combinations (#15567)

Co-authored-by: Pamphile Roy <[email protected]>

0ed66c76c010ec897a116e5a331941e43e3da562 authored almost 3 years ago

DOC: stats.energy_distance: disambiguate definition vs squared energy distance

31e7ca93f66c1784890eb3a188c86ac0a2ea6b1a authored almost 3 years ago

CI: don't run meson tests on forks and remove skip flags (#15779)

[skip azp] [skip circle]

7de016a87e0c72c60c83617aadc5cc442820cf0d authored almost 3 years ago

ENH: `scipy.stats.qmc.Sobol`: allow 32 or 64 bit computation (#15712)

* ENH: `scipy.stats.qmc.Sobol`: allow 32 or 64 bit computation

Co-authored-by: da-woods <dw-g...

b914537213eb5046ba4560432e15243dae341808 authored almost 3 years ago

MAINT: stats.shapiro: subtract median from shapiro input (#15777)

3cb6d1901f8a67cd46f96bbd0fe7a3ec6b84851b authored almost 3 years ago

DOC: stats.lognorm: rephrase note about parameterization (#15775)

dcde9836f5c34e991dfd3f90aeb484ebf7465bec authored almost 3 years ago

DOC: stats.powerlaw: more explicit explanation of support (#15776)

09ba329c63498a937c186435a9748668eee8612a authored almost 3 years ago

MAINT: stats: remove deprecated median_absolute_deviation (#15774)

da64f8ca0ef2353b59994e7e37ecee4e67a9b1d3 authored almost 3 years ago

MAINT: stats: resolve discrete rvs dtype platform dependency (#15771)

* MAINT: stats: resolve discrete rvs dtype platform dependency

2656ccbcc24253b15de85f977e63fd91183e2095 authored almost 3 years ago

ENH: Migration of `write_release_and_log` into standalone script (#15718)

Addresses migration of`write_release_and_log` from legacy paver
(`pavement.py`) to a standalone...

7abf27f2fe9046814a0eb6e618ad310bd29a15c4 authored almost 3 years ago

BUG: improve exceptions for private attributes in refactored `__all__` dicts (#15766)

* BUG: Fix imports in `interpolate`

* BUG: Fix imports in `io`

* BUG: Fix imports in `lina...

88270c078e0f3dcd80dc8b7367ff1cdd7db7bd15 authored almost 3 years ago

Merge pull request #15648 from duetosymmetry/DOC_ellipr_examples

2273abe8a2712d6feaa62428bcdd79be18a2dc94 authored almost 3 years ago

ENH: stats: replace ncf with Boost non_central_f distribution (#15763)

ENH: stats: replace ncf with Boost non_central_f distribution

e1d2f1c5db9810e36792e5599bba53cbfb1a4539 authored almost 3 years ago

MAINT: changed vague exception messages to a more descriptive ones that accurately reflect the condition. (#15728)

* added more descriptive exception messages

* MAINT: changed exception message format

d29a0e5e64f93360d717c5adb42c84f9eccc6865 authored almost 3 years ago

Merge pull request #15725 from Smit-create/r-15640

DEV: Try to detect scipy from dev installed path

b6a151b119324e37da03bb4f1498d67769a7de79 authored almost 3 years ago

MAINT: try to detect scipy from dev installed path

334b6662976bd3e8795b501c7e3d0f0a7b14574e authored almost 3 years ago

ENH: added full unbounded least squares solver output to lsq_linear instead of just solution

d5ae644d3b9238a76c505418764e5de88ee28543 authored almost 3 years ago

MAINT: special: deprecate casting to integers behavior in `special.comb` when `exact=True` (#15359)

* ENH: prevent comb from becoming less precise with exact=True

* MAINT: remove unecessary che...

4d66d813205fc7280633469b3e2a7276b4dfe72e authored almost 3 years ago

Merge pull request #15669 from tirthasheshpatel/fix-error-handler

BUG: stats: fix a bug in UNU.RAN error handler

b341097ace66f70ad10dd116e7683437afdd732e authored almost 3 years ago

Revert "DEV: Try to detect scipy from dev installed path while using no build option" (#15714)

defbc282bcedc777bdd65951653bbe66e560a8ea authored almost 3 years ago

MAINT: Clean up `type: ignore` comments related to third-party packages (#15625)

* MAINT: Remove reference to `cPickle`

`cPickle` was removed back in python 3.0

* TYP: Bum...

6f5290b3f8c3fa3029e1a93abba3de52eb2305c0 authored almost 3 years ago

MAINT: sparse.linalg: `bnorm` only calculate once (#15710)

a06cc0da56df9741105eedcd160b77f6f08236e1 authored almost 3 years ago

ENH: stats: bootstrap: support vector-valued statistics (#15491)

* ENH: stats: bootstrap: support vector-valued statistics

e2f6a23328cd1600816948d34e982bf7b90c88ae authored almost 3 years ago

MAINT: add qrvs method to NumericalInversePolynomial in scipy.stats (#15526)

* MAINT: add qrvs to NumericalInversePolynomial

Co-authored-by: Tirth Patel <tirthasheshpatel...

831d9aa787548709afd90363514bc66957f6c2d5 authored almost 3 years ago

ENH: add variable bits to `stats.qmc.Sobol` (#15647)

* ENH: add variable bits to Sobol

Co-authored-by: Tirth Patel <[email protected]>
C...

bfe069915cc0679ba6609211ad3d11ad40c7b7ac authored almost 3 years ago

DOC: adjust deprecation messages to specify version 1.11.0 (#15708)

[skip actions] [skip azp]

a89a025d8d727338191e3bf2a9081af5c164c099 authored almost 3 years ago

Merge pull request #15705 from mdhaber/vectorize_kstat

ENH: stats: add axis, nan_policy, masked array support to kstat, kstatvar

7586f9bd88d787c2c7c29c2b4f1e63652e440b8d authored almost 3 years ago

Loosen tolerance for found optimum (#15701)

2011bedb4e78ef6a955515394ee4a6a2f90bc28e authored almost 3 years ago

DOC: stats._axis_nan_policy: properly document default axis != 0

[skip actions] [skip azp]

e10d9ed0940475c90ba1ef11a8661eddfd247f4b authored almost 3 years ago

MAINT: stats: maintain backward compatibility - ravel by default

60d321eb826863a5a40d7e97a7543a6b5c7781d2 authored almost 3 years ago

ENH: stats: add axis, nan_policy, masked array support to kstat, kstatvar

8219e20afbe252b5806d316694c405c1641b84ad authored almost 3 years ago

fixed test fail in test_propack.py (#15703)

455a70841472d719e7ba067253922b762799bcba authored almost 3 years ago

Merge pull request #15695 from BvB93/annotations_constants

40f4455eef9bb64e18eb9a6f557fa6fe4a7dd3ca authored almost 3 years ago