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github.com/scipy/scipy

SciPy library main repository
https://github.com/scipy/scipy

adapt to tol->rtol renaming in test_iterative.py

very strange that this did not fail before already

5ae5901e6c177e4be274d829ae3c60417c94ccd6 authored about 1 year ago by H. Vetinari <[email protected]>
MAINT: bump project version (#19698)

* if you do i.e., `pip install -v .` on the latest SciPy
`main` branch, the version string repo...

c4ce0c4560bc635867512c4d2ea6db6f666d3eeb authored about 1 year ago by Tyler Reddy <[email protected]>
ENH: stats.shapiro: add axis / nan_policy / keepdims support (#19680)

f963595b6918e8e729d27d4ff79d4b19f880ad0b authored about 1 year ago by Matt Haberland <[email protected]>
MAINT: sparse: Stop supporting multi-Ellipsis indexing (#18541)

* MAINT: sparse: Stop supporting multi-Ellipsis indexing

* STY: remove unused import

-----...

d6af943f5102e92d93bf374117561362bacaecd4 authored about 1 year ago by CJ Carey <[email protected]>
MAINT:linalg: Prefer 'np.fill_diagonal' over 'diag_indices' (#19695)

9aba6bdb7edde6268a52eec9709826769b213c47 authored about 1 year ago by Lukas Geiger <[email protected]>
ENH: integrate._nsum: function for finite and infinite summation (#19667)

* ENH: integrate: draft _nsum

* TST: integrate._nsum: add basic tests

* STY: integrate._ns...

931dd4c7db3cd16f7fe7cc9fd17e3388795b73e9 authored about 1 year ago by Matt Haberland <[email protected]>
MAINT: spatial: Remove PDistWeightedMetricWrapper and CDistWeightedMetricWrapper(#19694)

452f2b11266a3413441ca107515f1b23489572d9 authored about 1 year ago by Lukas Geiger <[email protected]>
Merge pull request #19690 from rgommers/intel-llvm-compilers

BLD: avoid fast-math for oneAPI compilers, fix up handling of `special` headers

865969c961eb46af45432891d88079e0e3662957 authored about 1 year ago by Tyler Reddy <[email protected]>
BUG: Prevent mutation of `w` parameter in `spatial.distance.*` (#19693)

* BUG: Prevent mutation of `w` parameter in `spatial.distance.*`

* TST: Tests spatial.distanc...

971be315d5d6b31caf4dcf5df79ed0668e26142d authored about 1 year ago by Lukas Geiger <[email protected]>
MAINT:linalg: Remove redundant det and lu Fortran files (#19687)

* MAINT:linalg:Remove redundant Fortrancode

* MAINT:linalg:Modify meson file to remove redund...

35f3d3f01616210678acf72dcbcb8e720ccd2223 authored about 1 year ago by Ilhan Polat <[email protected]>
BLD: special: fix up use of deprecated Meson feature in new headers

e53a7dfc720a714a45b94fac336833b1a84a858c authored about 1 year ago by Ralf Gommers <[email protected]>
BLD: ensure we disable fast-math for oneAPI compilers (icx, ifx)

We did this already for icc/ifort, but the new compilers are completely
different and have separ...

3970884964899f1dd931184de840ffeb1d0aa01c authored about 1 year ago by Ralf Gommers <[email protected]>
MAINT: moment: rename parameter moment to order

cce480e3027ef0601a4b676810c29194a6646ca4 authored about 1 year ago by Matt Haberland <[email protected]>
Merge pull request #19676 from j-bowhay/gh-18489-follow-up

DEP: signal: remove ability to import window functions from signal namespace

e00a5948a9dddd81954d2039d71e7b0ffe8a36bc authored about 1 year ago by Tyler Reddy <[email protected]>
DOC: array types: mention partial support in `special` (#19677)

* mention partial support in `special`
* address review comments
* make capitalisation consistent

a54d06177a937df200a77b01d7cac343f7b0afbb authored about 1 year ago by Lucas Colley <[email protected]>
Merge pull request #19686 from rgommers/fix-sosfilt-test

TST: fix incorrect signal.sosfilt tests

90647a740bddc7fbd3f5fb1ddf25ea2135a5d1d6 authored about 1 year ago by Tyler Reddy <[email protected]>
TST: fix incorrect signal.sosfilt tests

This caused failures on macOS arm64 with NumPy main, because
clongdouble arrays started to be pa...

9ea05c029e3e140fa5eea4bd1e57cdc4b8443623 authored about 1 year ago by Ralf Gommers <[email protected]>
MAINT: stats.theilslopes: consistent promotion of `x` and `y` (#19679)

* MAINT: stats.theilslopes: consistent promotion of x and y

* Update scipy/stats/tests/test_m...

d41a74b73691bf1188f45d73322f4a9c60e3c4b9 authored about 1 year ago by Matt Haberland <[email protected]>
DEP: signal: remove ability to import window functions from signal namespace

bf9c8dfd59eec07c666beefc45c02ea1ba6afe7c authored about 1 year ago by Jake Bowhay <[email protected]>
ENH: stats.normaltest/skewtest/kurtosistest: add axis / nan_policy / keepdims support (#19662)

* ENH: stats.skewtest: add keepdims support and axis / nan_policy tests

* ENH: stats.kurtosis...

e35edb58c6287ea566ab65fe996e6657d30487d6 authored about 1 year ago by Matt Haberland <[email protected]>
DEP: linalg: remove tri{,u,l} (#19674)

* DEP: linalg: remove tri{,u,l}

* DOC: fix refguide check

5721702ee1471bdcbde0b33b850d91a9b4727d23 authored about 1 year ago by Jake Bowhay <[email protected]>
TST: fix tests

c4d1871d393a4a7c6a2704c5be0a239c2b0c15cb authored about 1 year ago by Jake Bowhay <[email protected]>
DEP: signal: remove scipy.signal.{bspline,quadratic,cubic}

168974ea5b676d0b6da0b7356bdf687f8a302253 authored about 1 year ago by Jake Bowhay <[email protected]>
Merge pull request #19669 from tylerjereddy/treddy_113_prep

REL: set version to 1.13.0.dev0

ba781eeed33359a5c3bede9e8914649988587f01 authored about 1 year ago by Tyler Reddy <[email protected]>
DOC: 1.12.0 release notes (#19628)

* Draft release notes/mailmap fixups for SciPy `1.12.0`

---------

Co-authored-by: Lucas Co...

20d131e91b2974d01252f144247465645f6f2c1e authored about 1 year ago by Tyler Reddy <[email protected]>
REL: set version to 1.13.0.dev0

* don't merge until the `1.12.0` release notes have been
merged and the `maintenance/1.12.x` bra...

d1c5648fd2f6f9092252269d3e01d65c5c88780a authored about 1 year ago by Tyler Reddy <[email protected]>
Added section with bounds.

9b9b2a0cac769376950eda37f2d91e0f0fb4d200 authored about 1 year ago by anupriyakkumari <[email protected]>
Apply suggestions from code review

towards https://github.com/scipy/scipy/issues/7168

Co-authored-by: Daniel Schmitz <40656107+ds...

54295345b90f21806ff896d01af6a8a5a3364a52 authored about 1 year ago by anupriyakkumari <[email protected]>
Apply suggestions from code review

towards https://github.com/scipy/scipy/issues/7168

Co-authored-by: Lucas Colley <lucas.colley8...

21f739e1248612821336850094d340a7fbed8d27 authored about 1 year ago by anupriyakkumari <[email protected]>
Add Example to lbfgsb docstring

dcf19043f03d83819c86753319da8d73c6fc471a authored about 1 year ago by anupriyakkumari <[email protected]>
ENH: stats.kstests: add axis / nan_policy / keepdims support (#19650)

* ENH: stats.ks_1samp: add axis / nan_policy / keepdims support

* ENH: stats.ks_2samp: add ax...

1004bb958b43426cd6cfd5cdf5baafa4f138902c authored about 1 year ago by Matt Haberland <[email protected]>
STY: special: use indent width of 4 in clang-format (#19660)

* STY: special: use indent width of 4 in clang-format

was previously 2

* MAINT: git blame ...

1c3700c4b7c9d4609f09a1bd6c25b85a6d700327 authored about 1 year ago by Lucas Colley <[email protected]>
Merge pull request #19661 from rgommers/fix-prerelease-job

CI: fix pre-release job by correct version pin for scipy-openblas32

f9c8a8aa500270eb9c222ae39627fb46c35c9283 authored about 1 year ago by Tyler Reddy <[email protected]>
CI: fix pre-release job by correct version pin for scipy-openblas32

Closes gh-19640

[skip ci]

da41b036646e48042132449a81006ec50d5dd7a4 authored about 1 year ago by Ralf Gommers <[email protected]>
Merge pull request #19656 from seberg/patch-1

BUG: Remove unnecessary incref on unrelated type

f16c3b1665d961bcbcc9e533ed8f45b54a6bf256 authored about 1 year ago by Ralf Gommers <[email protected]>
MAINT: git blame ignores for lint clean-ups (#19658)

[skip ci]

bf188fbe0a8e30f36381c91d0e6acd4241bcae7f authored about 1 year ago by Lucas Colley <[email protected]>
BUG: Remove unnecessary incref on unrelated type

I was removing it NumPy, because I don't see why we need the type public in the C-API. That br...

ccb5f28d4fa8b508a9f9ed8d2a4060f6fffab74c authored about 1 year ago by Sebastian Berg <[email protected]>
MAINT: lint: enable line-length check (package-wide) (#19609)

* MAINT: `noqa` for awkward UP007 violation

I tried to fix but `mypy` complains along the lin...

fa9f13e6906e7d00510d593f7f982db30e4e4f14 authored about 1 year ago by Lucas Colley <[email protected]>
MAINT: lint: enable `stacklevel` warnings check (#19623)

* MAINT: lint: enable `stacklevel` warnings check

81662226aac5c6b978825b381d2793b16d3b354f authored about 1 year ago by Lucas Colley <[email protected]>
MAINT: stats.chi.mean: improve calculation (#19648)

* MAINT: stats.chi.mean: improve calculation

09ecd70bc138f7853dca24a04bc6b7f61166118b authored about 1 year ago by Daniel Schmitz <[email protected]>
MAINT: stats.entropy: silence mypy (#19651)

44a6e682530e25abb87bab4f9b63190d81dea516 authored about 1 year ago by Matt Haberland <[email protected]>
ENH: stats.cramervonmises/epps_singleton: add axis / nan_policy / keepdims support (#19487)

* ENH: stats.cramervonmises: add axis / nan_policy / keepdims support

* ENH: stats.cramervonm...

b86e1a37eda5b9e626b3618b9757f039bda94bfd authored about 1 year ago by Matt Haberland <[email protected]>
BUG: stats._axis_nan_policy_factory: respect too_small when detecting empty inputs (#19578)

* BUG: stats._axis_nan_policy_factory: respect too_small when detecting empty inputs

--------...

ab27d3eaba26ab70d6d8f3f2aa9d0ef9b3c1368a authored about 1 year ago by Tirth Patel <[email protected]>
DOC: Clarify error bound in integrate tutorial (#19637)

20353222a7a8b63bd56067a56b9bf8db4d0d3107 authored about 1 year ago by David Boetius <[email protected]>
ENH: integrate: add `cumulative_simpson` (#18151)

* ENH: integrate: add `cumulative_simpson`

Co-authored-by: Matt Haberland <[email protected]>

7f397e03e0a3554d8c02c8b477e8dc5e0ce7edc9 authored about 1 year ago by Praveer Nidamaluri <[email protected]>
Fix sparse multiply (#19600)

* Add files via upload

* Add files via upload

* Add files via upload

* Avoid calling __...

deeb67ffc68d66a9b3069c1bb9cc3bb195c91b66 authored about 1 year ago by emilfrost <[email protected]>
ENH: constructors for sparse arrays (#19171)

* Add remaining sparray constructors: eye_array, random_array, kron, kronsum

Adjust tests and...

e3bbb6b15752681532e48af769e52f401cd55c14 authored about 1 year ago by Dan Schult <[email protected]>
Returning NotImplemented in comparisons with sparse arrays (#19593)

* Add files via upload

* Add files via upload

* Add files via upload

4408b8ca1efd769bbce321b7fa80e6c9e19fb428 authored about 1 year ago by emilfrost <[email protected]>
MAINT: stats.nakagami.stats: improve implementation with special.poch (#19635)

MAINT: stats.nakagami.stats: improve implementation with special.poch

9e985fc1a1647ea88d928549cb6402615e5e2cb3 authored about 1 year ago by Daniel Schmitz <[email protected]>
Merge pull request #18997 from h3jia/patch-2

DOC: add `noexcept` to `cython_optimize` docs

7b94b0938b4154e64cb3a07d0c43920989967d05 authored about 1 year ago by Tyler Reddy <[email protected]>
DEP: improve deprecation of remaining private modules named without underscore prefix (#19585)

* DEP: improve deprecation of remaining private modules named without underscore prefix

* MAI...

a182c1e6a2f21085124753f61dc17023658e78c0 authored about 1 year ago by Lucas Colley <[email protected]>
Merge pull request #19626 from tylerjereddy/treddy_win_fixups_numpy_main

MAINT: more SciPy windows int shims

d664abf70dda7b1ba1322f6abe1d4b55db6bdfee authored about 1 year ago by Evgeni Burovski <[email protected]>
ENH: add max dist to NearestNDInterpolator (#19483)

* ENH: interpolate: KDTree options to speed up interpolate.NearestNDInterpolator

This allows ...

1e7726d5c00de545e1a7c713a2dcf1431f1dcf7a authored about 1 year ago by harshilkamdar <[email protected]>
MAINT: more SciPy windows int shims

* fixes another 120 test failures on SciPy `main`
built against NumPy `main` on Windows, while s...

619e68f21769a19dd25e35506d25ddf1f960d9e3 authored about 1 year ago by Tyler Reddy <[email protected]>
DEP: integrate: deprecate romberg and quadrature (#19510)

* DEP: integrate: deprecate romberg and quadrature

* DOC: integrate: add version of quadratur...

e28cc3841812003a919ae974c7b310074a8deb65 authored about 1 year ago by Matt Haberland <[email protected]>
Merge pull request #19622 from rgommers/cy-32bit

CI: undo cython==0.29.35 pin for the 32-bit Linux job, remove `!=3.0.3`

ed381ac30e7d9cd7250b22ad8dc02538212d3621 authored about 1 year ago by Tyler Reddy <[email protected]>
Merge pull request #19624 from j-bowhay/gh-19620

MAINT/TST: _lib: use value instead of deprecated s

4ae723d158e3b369ec4bf43e95703ac7bc4c6c59 authored about 1 year ago by Ilhan Polat <[email protected]>
MAINT/TST: _lib: use value instead of deprecated s

4c9d6dbc102762a978edea71294dee744ffa4010 authored about 1 year ago by Jake Bowhay <[email protected]>
CI: undo cython==0.29.35 pin for the 32-bit Linux job, remove `!=3.0.3` [wheel build]

We're at Cython 3.0.6 now and the relevant upstream bugs have been fixed.
We no longer need the ...

3f13b3b0b66a36b2eb2bccea7ee8fc601403bdbd authored about 1 year ago by Ralf Gommers <[email protected]>
Merge pull request #19618 from tylerjereddy/treddy_qmc_perm_win

ced6d3acb869615f62907487304331feae0fd231 authored about 1 year ago by Pamphile Roy <[email protected]>
fix numerical stability (#19617)

MAINT: stats.norminvgauss.pdf: fix intermediate over/underflow

f34c611eb901ba452a28f4f8b039b79bac5e13d7 authored about 1 year ago by Maciej Skorski <[email protected]>
MAINT: qmc permutations win type

* this patch fixes 116 test failures for SciPy
with NumPy `main` on Windows; the full suite
stil...

2aef0ff226e431670f20b21503992df212ca0d55 authored about 1 year ago by Tyler Reddy <[email protected]>
MAINT: array types: restrict to boolean & numerical dtypes (#19606)

* MAINT: array types: restrict to boolean & numerical dtypes

57725c25bcc26015074d1b380e9912ee513b7a5b authored about 1 year ago by Lucas Colley <[email protected]>
BUG: fix overflow in stats.boxcox_normmax when method='mle' (#19604)

* BUG: stats.boxcox_normmax: avoid overflow with method='mle'

788ed636a33c711490e11c39ef7cf554260e5f35 authored about 1 year ago by Xuefeng Xu <[email protected]>
MAINT: Added clang-format formatting for special C++ files (#19613)

* Added .clang-format for special C++ files and formatted them

* Added newlines

---------
...

ecef3490da68a0c53ba543c618bab0c8e15dccee authored about 1 year ago by Irwin Zaid <[email protected]>
Merge pull request #19608 from lucascolley/refguide-check-pass

MAINT/DOC: refguide-check fixes

a5902293cead42dfca65a00927110a141f0342f3 authored about 1 year ago by Evgeni Burovski <[email protected]>
Merge pull request #19611 from mart-mihkel/clarify-interpolation-doc

DOC: clarify interpolator termionolgy

37366064fb3f622ee703a0f56bef76d0a0181f8d authored about 1 year ago by Evgeni Burovski <[email protected]>
ENH: Make special C++ implementations work on CUDA (and beyond!) (#19601)

* Changes to special C++ code to make lambertw work on CUDA

* Undid formatting, saving that f...

9a43b5ce85ce0a2ffc7882f698eaccc88adabb33 authored about 1 year ago by Irwin Zaid <[email protected]>
ENH: add exact=False support for stirling2 (#19287)

* ENH: add exact=False support for stirling2

* adding preliminary support for exact=False s...

7da0e7560036aa404369ae4557c56d2e4ce5465b authored about 1 year ago by Lucas Roberts <[email protected]>
DOC: clarify interpolator termionolgy

make documentation mentioning interpolator objects
CloughTocher2DInterpolator, LinearNDInterpola...

14843433524a130577fa4c88e1874bae7161ab97 authored about 1 year ago by mart-mihkel <[email protected]>
MAINT/DOC: refguide-check fixes

[docs only]

cbf4e999301a22494b69c094740e42ef0c2c891e authored about 1 year ago by lucascolley <[email protected]>
Merge pull request #19603 from tylerjereddy/treddy_issue_11550_doc_shim

DOC: doc shim for eig normalization

fcf7b652bc27e47d215557bda61c84d19adc3aae authored about 1 year ago by Tyler Reddy <[email protected]>
ENH: Add faster inverse-Wishart rvs and logpdf (#19444)

* ENH: Use faster inverse-Wishart sampling method

Fixes #19432

* ENH: Use faster inverse-W...

fd01084e8c8c639c2b50bb4a827eb5e110aec396 authored about 1 year ago by Seth Axen <[email protected]>
DOC: doc shim for eig normalization

* this is a documentation shim to at least temporarily
avoid the confusion in gh-11550, as discu...

c1bbf2d6f1c72de0a0f325b6fa4b50986c7f1f39 authored about 1 year ago by Tyler Reddy <[email protected]>
Merge pull request #19581 from ev-br/ndbspline_tx_neq_ty

BUG: interpolate/ndbspline: fix OOB access for len(tx) != len(ty) in tensor product splines

f016aa9f9628df19c8a2d591796cf024ae2acef5 authored about 1 year ago by Tyler Reddy <[email protected]>
Merge pull request #19597 from mdhaber/gh19526

TST: special._sinpi/_cospi: skip failing `test_intermediate_overflow`

1d1518e8bf6455d4eb87cdf7ae91d5685f044321 authored about 1 year ago by Tyler Reddy <[email protected]>
Merge pull request #19497 from lucascolley/ci-lint-only

CI: add '[lint only]', '[docs only]' skip tags

5f17ac3ad97c7f41c18bd3286406e5b93f76e7d3 authored about 1 year ago by Matt Haberland <[email protected]>
TST: special._sinpi/_cospi: skip failing test

b121d4580541a61f33ca7f3b93103cc5586f9a92 authored about 1 year ago by Matt Haberland <[email protected]>
TST: special._sinpi/_cospi: check real and imaginary parts separately

3760e2f4c51c5d957ebe31e6aee07291a671c49b authored about 1 year ago by Matt Haberland <[email protected]>
Merge pull request #19589 from lgeiger/hamming-dot

ENH: Use `np.dot` to speedup `spatial.distance.hamming`

b8c4794bf480f9f37361eda1abc8ba4a57b086e8 authored about 1 year ago by Tyler Reddy <[email protected]>
MAINT: interpolate/RGI: avoid unnecessary validation of data size (#19591)

RegularGridInterpolator allows changing the interpolation method
at call site; if it is changed...

5ae735d36ef1ecddbe445f9690e74f32356999c5 authored about 1 year ago by Evgeni Burovski <[email protected]>
Merge pull request #19590 from ilayn/cython_warnings

MAINT:special:Add more noexcept to Cython signatures

a7a8e5afbd6c0b5e96b91adf1209198b78aebbf9 authored about 1 year ago by Albert Steppi <[email protected]>
MAINT:special:Add more noexcept to Cython signatures

2e39b70ecb8d133e2bf32fa3fc2f6a276e2104ee authored about 1 year ago by Ilhan Polat <[email protected]>
ENH: Use `np.dot` to speedup `spatial.distance.hamming`

ff2da4a55b5a7a3984d91c4c4d6134c34712507d authored about 1 year ago by Lukas Geiger <[email protected]>
Merge pull request #19588 from ilayn/fastmatmarketwin

BLD:Add missing cstdin include in fast matrix market

44ca7042b6f863b1a80b97bee2f09dbac870dabd authored about 1 year ago by Ralf Gommers <[email protected]>
BLD:Add missing cstdin include in fast matrix market

257e025d6ad4fd0c3cf23f0ae7856b74ba6c65a2 authored about 1 year ago by Ilhan Polat <[email protected]>
Merge pull request #19583 from lgeiger/spatial-correlation-dot

ENH: Use `np.dot` to speedup `spatial.distance.correlation`

16d77d6af7801a90071d60b24ebef14a460d313c authored about 1 year ago by Tyler Reddy <[email protected]>
ENH: Use np.dot for centered correlation

4141d2f46d77329b31915afdfb24c9f72ba16b74 authored about 1 year ago by Lukas Geiger <[email protected]>
ENH: Use builtin Python math operations for scalar values

77f135df810351e959cbb06054a019b9ade4896f authored about 1 year ago by Lukas Geiger <[email protected]>
ENH: Use `np.dot` to speedup `spatial.distance.correlation`

7e85a8894dca17e3c70747265f090ff620f90a60 authored about 1 year ago by Lukas Geiger <[email protected]>
Merge pull request #19576 from SimonSegerblomRex/fix-19575

BUG: Use uint32 for cost in NI_WatershedElement

ae9dc13161cb227d7651c58dc47971193510221d authored about 1 year ago by Tyler Reddy <[email protected]>
BUG: interpolate/ndbspline: fix OOB for len(tx) != len(ty) in tensor product splines

To be able to release the GIL, we pack the tuple of 1D knot arrays
into a 2D array. Since the le...

e1eab2adb97fb50ed96bf8291d06a0137cfcb956 authored about 1 year ago by Evgeni Burovski <[email protected]>
BLD:MAINT:Update dev.py message (#19579)

[skip ci]

a65cb5c79091ac388d02c0669c989403805c951d authored about 1 year ago by Ilhan Polat <[email protected]>
Use allclose for assert and iinfo instead of bit shift

Based on review comments for the first commit.

0db90e1f09288c9293787407bcd2d4d6485e18e4 authored about 1 year ago by Simon Segerblom Rex <[email protected]>
Merge pull request #19574 from rgommers/update-build-docs

DOC: update Building from source docs for editable installs

456b2116c8fa524b35c26e95fc54cd57fc6df7ab authored about 1 year ago by Tyler Reddy <[email protected]>
DOC: new CI skip tags for docs and lint only

[docs only]

c4a8ce8ca049492f6834023328711c732ecf5ec4 authored about 1 year ago by lucascolley <[email protected]>
Merge pull request #19506 from dschult/update_sparse_tests

MAINT: sparse: update tests to switch to format and toarray from get_format() and .A, .H

884245451eee59603d8c5771dbeb22cf66adcb2f authored about 1 year ago by Tyler Reddy <[email protected]>
DOC: address review comments on editable installs note

[skip cirrus] [skip actions]

95f9c7d2bf787537b0801f453e0e7739d9ac4393 authored about 1 year ago by Ralf Gommers <[email protected]>
CI: add '[lint only]', '[docs only]' skip tags

dbc34b1ebb2780420524e7d274c12a2638ce8806 authored about 1 year ago by lucascolley <[email protected]>
Merge pull request #19546 from anntzer/msse

MAINT: Fix interpolate.make_smoothing_spline's size validation message.

43f2e7d4cdb5d474897425a88d3eaa1a9dab8d98 authored about 1 year ago by Evgeni Burovski <[email protected]>