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github.com/scipy/scipy

SciPy library main repository
https://github.com/scipy/scipy

BLD: ensure all `run_command` usages in meson.build files use `check`

Not specifying `check` gives a warning, because the behavior will
change at some point.

af36167a5e23e50f29b147bc71e42999a701314a authored almost 2 years ago
MAINT: optimize.milp: improve behavior for unexpected sparse input (#18327)

553fb514c46b5f412700395059be482d4d791453 authored almost 2 years ago
CI: fix typos

6eff846427c66dd8c6db0ec381df3e6a9c5112a5 authored almost 2 years ago
CI: GHA windows.yml reorg

a09daf766193dc289fc66e6205b949065ca0cf56 authored almost 2 years ago
CI: Windows full azure-->gha

ccfed0ec16644eed0493605059488994fb932505 authored almost 2 years ago
Merge pull request #18315 from tupui/ci_coverage

CI: remove coverage jobs, migrate to GHA

745bf604640969a25c18f6d6ace166701fac0429 authored almost 2 years ago
CI: coverage in plain text.

[skip cirrus] [skip circle] [skip azp]

ab8fd06d048298158d396ec4c3308a76bf619781 authored almost 2 years ago
Merge remote-tracking branch 'upstream/main' into ci_coverage

54a83186ce21f2cb41c009f4570a8f343822abe6 authored almost 2 years ago
Revert "ENH: stats.anderson_ksamp: add permutation version of test (#16996)" (#18321)

This reverts commit 46811bed97a375ecf700174cf86675e10fb57a57.

84c692b2e6995ad1b2172c6eaba14b98988a5f26 authored almost 2 years ago
TST: scipy.signal.order_filter: add test coverage (#17531)

Co-authored-by: Jake Bowhay <[email protected]>

1538cdd246a742634d0ff396bfc159014051fdaf authored almost 2 years ago
Merge pull request #18320 from tupui/ci_refguide

CI: migrate ref guide-check to CircleCI

4cdb24c7537a12e5e1778dd6b2be7b7be58796b1 authored almost 2 years ago
Apply suggestions from code review

Co-authored-by: Pamphile Roy <[email protected]>

b9ae5b901dcbfaaff7dd2441f68c54e26b264621 authored almost 2 years ago
CI: fix coverage usage by filtering warning.

[skip cirrus] [skip circle] [skip azp]

a476f7d9ae2289a22c46174704236c7817ab0196 authored almost 2 years ago
CI: migrate refguide-check to CircleCI.

[skip cirrus] [skip actions]

f87b9e18c94b6d3d0bd501293ae3f55d3534d0fe authored almost 2 years ago
CI: pin pytest-cov.

[skip cirrus] [skip circle] [skip azp]

57c2b62c3f4348e892b3e904dd573a116da6b450 authored almost 2 years ago
DOC/CI: update CI listing

593a15f321f511e78a63eb5457915084d1065fd0 authored almost 2 years ago
CI: gcov during build and not test.

[skip cirrus] [skip circle] [skip azp]

a5fa611a2b21f1b644c60d137f8471db1204463d authored almost 2 years ago
CI: add coverage and gcov to a linux job.

[skip cirrus] [skip circle]

b39901e24affbb7b90667ae09340e43e12702855 authored almost 2 years ago
Deprecate scipy.signal.{bspline, quadratic, cubic} (#17455)

* TST: signal: fix signal bsplines with integer arguments

* TST: signal: fix bspline tests fo...

3d851c7d3e9e9da85a90b3b0b11e72e4b336b0bc authored almost 2 years ago
Merge remote-tracking branch 'upstream/main' into ci_coverage

c39bd3712443169c71ffd7bc8ca08e0d25405c25 authored almost 2 years ago
Merge pull request #18318 from matusvalo/ctypedef_noexcept

MAINT: Mark function pointer ctypedefs as noexcept

ea62c23026af34e8f6fa471fd48c3fa0ccf27967 authored almost 2 years ago
CI: move `prerelease_deps_coverage_64bit_blas` to GitHub actions. (#15958)

[skip azp] [skip circle]

Co-authored-by: Pamphile Roy <[email protected]>
Co-authored-b...

09246e4fccaaf55adb2b50a41a46c07aa570d8e8 authored almost 2 years ago
Merge pull request #18312 from andyfaff/gcc8

CI: move gcc-8 test to GHA

445777598fc0e2cb96d9a506acb32b1d2655f80c authored almost 2 years ago
CI: gcc-8 need wheel after all

1b5553a42c5856b22dc5f512989349a4b32a797d authored almost 2 years ago
Merge branch 'main' into gcc8

58696645fd0daca8e9306693e58ab87af5600552 authored almost 2 years ago
CI: gcc-8 apply suggestions after review

656c105e424fb9fb2c99074a6f5949a88251fc60 authored almost 2 years ago
Mark function pointer ctypedefs as noexcept

50d0825256ddb76c5567e6cc8eb50e7d36908e21 authored almost 2 years ago
CI: remove scikit-umfpack/sparse from Azure testing (#18314)

It's tested in the macOS tests on GitHub Actions, where we
get these scikits from conda-forge. ...

e39f7b64047087f267bcce2472cbe0db9b3570ff authored almost 2 years ago
Merge pull request #18225 from ilayn/det_no_fortran

ENH:MAINT:linalg det in Cython and with nDarray support

156050b1fad7851ee54862b621112357199b0fbb authored almost 2 years ago
CI: remove coverage jobs.

[skip actions] [skip cirrus] [skip circle]

a873e0178f24c296a25caad0018b84fd16933440 authored almost 2 years ago
CI: remove asv from AzureCI. (#18313)

[skip ci]

9382d4bd57d2b99bdb1887332c44a45a83879575 authored almost 2 years ago
CI: move lint job from Azure to GHA (#18311)

05c2b975d6c0fcab2f8a6cc948b5b1b289a3423c authored almost 2 years ago
ENH: add von Mises-Fisher distribution (#17624)

Co-authored-by: Pamphile Roy <[email protected]>
Co-authored-by: Matt Haberland <mhaberla@...

2242bf856baabbbdb8c7d8b53eadb0ba05a1b746 authored almost 2 years ago
MAINT: Explicitly mark `cdef` functions not raising exception with noexcept (#18266)

Also ping `cython==0.29.33` in the pre-release CI job, because this commit
is one of a few need...

13a73fed573ee88343334ae5b0f78f7f4a6444a2 authored almost 2 years ago
CI: move gcc-8 test to GHA [skip cirrus][skip circle]

d684f1976fe32c90dceab73c9fb1ae302b310b32 authored almost 2 years ago
Merge pull request #18263 from rgommers/propack-fixes

BUG: some tweaks to PROPACK f2py wrapper and build flags

8ce4b3b4866a5f3d69e0524745d860035c5fb42b authored almost 2 years ago
DOC: stats.multivariate_t.cdf: improve documentation (#18307)

* Add cdf under multivariate methods
* Fix LateX pdf formula

871b82e6fbe33b56b04e2e2c1151f224c81c3889 authored almost 2 years ago
Merge pull request #18303 from tupui/doc_css_toctree

f4a2dc33d063d97a41c5df9b2284f9b7f311d1b2 authored almost 2 years ago
DOC: interpolate: note on bivariate spline axis ordering, add examples

reviewed at https://github.com/scipy/scipy/pull/18070

07d3ae87a6e455f7ae200d6601a72025db222708 authored almost 2 years ago
Merge pull request #18195 from AtsushiSakai/issue_16729

MAINT: interpolate: remove duplicated FITPACK interface _fitpack._spl_.

9504c67a2696427ff9abba6c330680beca50fdd7 authored almost 2 years ago
MAINT: update boost_math (#18304)

c5b83353472f5aab31c335abd6887fbf6d082ebb authored almost 2 years ago
Merge pull request #18269 from WarrenWeckesser/exponweib-sf-isf

undefined

d34cc3517e4d6d07164d0bb037ee074a691576de authored almost 2 years ago
ENH: ndimage: add `axes` support to `uniform_filter`, `minimum_filter`, `maximum_filter` (#18261)

* add `axes` support to `uniform_filter`
* add `axes` support to `minimum_filter`, `maximum_fil...

a4bd3f61d0c597a76eaf80cb1b7ae29224d25928 authored almost 2 years ago
DOC: adjust css for card-header.

[skip azp] [skip actions] [skip cirrus]

dff8b7836d3949f471132c3e0ce9d895dbed1da0 authored almost 2 years ago
DOC: respect hidden toctree unless in reference

a6f82b4fb84d6fb7e5a03e476933543015d4ecf9 authored almost 2 years ago
DOC: interpolate: add see also references for data on regular grid (#18299)

b07ed536bdd1bee735e0ded1dbe5bf32ac209604 authored almost 2 years ago
MAINT:optimize: shgo assorted fixes (#18238)

5c74cc8e026ceac29a9d1a776985a8827fe3ee62 authored almost 2 years ago
TST: stats: infrastructure for generation of distribution function reference values (#18275)

dea4766ae384986b287ea6fc722d8a248c5feb53 authored almost 2 years ago
CI: remove `setup.py` based jobs from GitHub Actions and run less on merge to main (#18294)

4c497c8314c4a52050c5bfcf71b5d250df87b5f9 authored almost 2 years ago
TST: stats._axis_nan_policy: add test that decorated function accepts custom array-like (#18291)

9f097c6d7da83d9765ee56f490f049913a979f31 authored almost 2 years ago
DEP: stats.mode: raise with non-numeric input (#18290)

* DEP: stats.mode: raise with non-numeric input

* TST: stats.mode: enhance test per suggestio...

30be78123c2ba8460d621bcf48aafefd9b827c73 authored almost 2 years ago
MAINT: linalg.solve_discrete_are: fix typo in error message

12afb627f3a07110502e0ff6ff452db56616f673 authored almost 2 years ago
BUG: fix for incompatible pointer warning from `stats._rcond` (#18293)

Closes gh-18282

[skip ci]

Co-authored-by: Ralf Gommers <[email protected]>

f5668401eb0fa905562bed0d0eaccc4253c2e077 authored almost 2 years ago
DOC: wheel build infra updates (#18181)

Fixes #17985

* update the detailed roadmap CI section to remove
discussion of the old `scipy...

ae722bf5146eeddfe15682492da274bdc4034ede authored almost 2 years ago
CI: add CircleCI API token to fix html preview link (#18292)

49d46084052037dde9f19c77626d57b486588910 authored almost 2 years ago
MAINT: io.mmread: allow leading whitespace (#18289)

c8206b80eb6b8d7ed1104b4e1b6587b6b194f0fc authored almost 2 years ago
ENH: stats.weibull_min/dweibull: improve sf and isf (#18232)

* ENH: stats.weibull_min/dweibull: improve sf and isf

c62be9c695f3195362862bc9e9328057bf390b86 authored almost 2 years ago
MAINT: Remove codecov (#18285)

8ff629332c786e9f0ee6aaf88042716557bf3aa1 authored almost 2 years ago
DOC: spatial.distance: update formula for {s,sq}euclidean (#18280)

Co-authored-by: Pamphile Roy <[email protected]>

9ad27c9e57c024f4b0e2a0431e78ddee87d237a7 authored almost 2 years ago
Update iterative.py

02a0bfacfb00981a90547717e6f8c82f44d02c13 authored almost 2 years ago
FIX trigger indptr/indices copy when data are copied in astype (#18192)

* FIX trigger indptr/indices copy when data are copied in astype

* TST add unit tests

* it...

e574cbcabf8d25955d1aafeed02794f8b5f250cd authored almost 2 years ago
BLD: Enable incompatible pointer types warnings (#18281)

- Remove -Wno-incompatible-pointer-types from the global meson.build
- Add it to _rcont, cython...

c1189f119e1fe5f3061f6542916d517d48109fdb authored almost 2 years ago
Merge pull request #18276 from mdhaber/gh18274

c3a277b1f1b97bfb13e1f4c5063aabbc6772f23d authored almost 2 years ago
MAINT: stats.betaprime: avoid spurious warnings in `fit`, `stats`

9ce8db32577d8724b30aa111498caf993a4f77f7 authored almost 2 years ago
Merge pull request #18270 from rgommers/test-mesonpython-main

CI: test meson-python from its main branch in one CI job

26cd496418e4dcd694867333fce5ea0ab4c2fa8d authored almost 2 years ago
ENH: stats: Implement _sf and _isf for exponweib.

185b188b6b3eb311539253167ebfbdc85780d243 authored almost 2 years ago
BUG: Fix handling on user-supplied filters in `signal.decimate` (#17881)

* BUG: Fix handling on user-supplied filters in `signal.decimate`

Detect if user-supplied fil...

cf1999530f3a8a53c539da171111c9e23f28a62e authored almost 2 years ago
CI: test meson-python from its main branch in one CI job

Doing it in this "venv inside source tree" job is for convenience,
since it's the job using `pip...

984615d68e304cbc36abb4845b63005cc5009044 authored almost 2 years ago
DOC:TST:linalg:det:Fix english,use assert_allclose

04b074bb1f8a627a305458da60bd40b873dc878d authored almost 2 years ago
Merge pull request #18264 from rgommers/remove-numpymath

MAINT: remove `from numpy.math cimport` usages

e98d5719bd3402d9b2400a1524b072960ec595c3 authored almost 2 years ago
DOC:linalg:det:Fix line continuation ellipses

87da7a59fde8139bcb3e5504c6ae144ecb95ed9d authored almost 2 years ago
BUG: include `npy_common.h` in `npy_cblas.h`

This is necessary, because it uses `npy_int64` & co. The implicit
assumption previously was that...

8bb7733395a98528974de22fed3c6e770f545784 authored almost 2 years ago
MAINT:TST:linalg:det:Some behavior fixes,more edge cases

a5b74875a8c2f1a436a09fdcab898077fb296cd3 authored almost 2 years ago
MAINT: sync changes to `npy_blas.h` and `npy_blas_base.h` from numpy

c2acd26f3d1f52207aa09e0a7c909e66ad868755 authored almost 2 years ago
MAINT: remove `from numpy.math cimport` usages

We'd like to get rid of `libnpymath`, and the (unrelated)
`numpy.math` in the Python API was als...

ed3b44acc144c992f40cc630ba450cd116091414 authored almost 2 years ago
BUG: some tweaks to PROPACK f2py wrapper and build flags

Still far from fixed, but it should be closer - and prepares
for removal of `setup.py` and re-in...

47e0d7899a8c1dcd0524c0472c485e43f61d64b9 authored almost 2 years ago
Merge pull request #18216 from tupui/doc_result_class

MAINT: stats: replace use of make_dataclass with explicit dataclasses

204ff51bdc8f020525950eed9553a56befa5ea3c authored almost 2 years ago
ENH: stats.ttest_ind: add degrees of freedom and confidence interval (#18210)

98c51a67c6818492a4bd0682df2e4a8e17688d7a authored almost 2 years ago
Merge pull request #17322 from melissawm/notebook-infra

17db361c9070e5187e017317bd3d8e5f91f5281c authored almost 2 years ago
Merge pull request #18257 from rgommers/fix-cython-signatures-depends

BLD: fix missing build dependency on cython signature .txt files

0d8029300024d9332b433dd3e4881effda969fa7 authored almost 2 years ago
DOC fix link in release notes v1.7 (#18258)

7b46caf2427e12ca0ab58fc9e30565d11cb6e51b authored almost 2 years ago
BLD: fix missing build dependency on cython signature .txt files

[skip cirrus] [skip circle] [skip azp]

4f49c863c33c75e5f71efa38596cdf76728138ca authored almost 2 years ago
Merge pull request #18241 from tupui/del_gitpod

MAINT: remove Gitpod in favour of GitHub CodeSpaces

34b9f1333c2582cf75f39519f2238459c0a4f799 authored almost 2 years ago
DOC: Clarify executable tutorials and MyST/Jupytext

[skip azp] [skip cirrus] [skip actions]

2eae33290a9e5511fbef4bd17c1834b4a520f6d9 authored almost 2 years ago
ENH: stats: Add relativistic Breit-Wigner Distribution (#17505)

Co-authored-by: Matt Haberland <[email protected]>
Co-authored-by: Warren Weckesser <warren....

838da2f2e619200005c894b7bdeb72a7cb560b18 authored almost 2 years ago
Merge remote-tracking branch 'upstream/main' into del_gitpod

[skip ci]

442a183635f934ede89e4b5607559bbd01c734d0 authored almost 2 years ago
MAINT: setup.sh as executable file

2a0f7097e233c84a85a7578d317cbba45c85012e authored almost 2 years ago
DOC: remove content related to `setup.py` usage from the docs (#18245)

378e614ef6545c3674a91fda5b1f210930e2175e authored almost 2 years ago
DOC: orthogonal_procrustes fix date of reference paper and DOI (#18251)

Co-authored-by: Pamphile Roy <[email protected]>

41751bb4c05425773ba2966ba8053a0995a6b1fe authored almost 2 years ago
Merge pull request #18248 from rgommers/cython-version-check

BLD: implement version check for minimum Cython version

1a3021a08e5898b52d7b98f7b1b21ae4a6306484 authored almost 2 years ago
Merge pull request #18246 from henryiii/patch-1

ci: touch up wheel build action

7364d7c1b71a792c1b1f7f341df52c0b2a44a285 authored almost 2 years ago
BLD: implement version check for minimum Cython version

Also update the minimum meson-python version while we're at it,
there's a number of bug fixes in...

eb67f02f477b7a64c7340f2b08d4d0e6f8956858 authored almost 2 years ago
ci: touch up wheel build action

[wheel build]

Signed-off-by: Henry Schreiner <[email protected]>

c373687b991943316701b7a3a8dd76aa2f46dd69 authored almost 2 years ago
DOC: link to info about Gitpod.

[skip ci]

a34eb3eda5ea937c40feaeeda4a19685751d7276 authored almost 2 years ago
ENH: ndimage.gaussian_filter: add `axes` keyword-only argument (#18016)

ENH: ndimage.gaussian_filter: add `axes` keyword-only argument

2bd4d6cc20c8eb3fd8a95fa24ab17807831ee2e4 authored almost 2 years ago
BUG: sparse: Fix LIL full-matrix assignment (#18211)

* also indentation fixes and add required shape check

Co-authored-by: Tyler Reddy <tyler.je.r...

e168cfff702402d6913f40af5d31a6249020364b authored almost 2 years ago
DOC: Pin docutils and filter additional sphinx warnings

f06833d4692527728e4d89f9bcb221970f2ab4ab authored almost 2 years ago
STY: Remove unnecessary semicolon

d4fe3d96cff4532d76148de86909d934d87b4802 authored almost 2 years ago
BUG: vq.kmeans() compares signed diff to a threshold. (#8727)

* BUG: vq.kmeans() compares signed diff to a threshold.

In l. 316 of vq.py, diff is calculate...

011edfd0154f0d4f1593bdf09b4be5adc65fc7c5 authored almost 2 years ago
TST:linalg:det:Separate 'gG' dtypes in tests

b8667679329af8ed338c40810a10fe2628376a8d authored almost 2 years ago