github.com/scipy/scipy commits | Ecosyste.ms: OpenCollective

DOC: remove warnings in doc build

e4074e8b0e2fd5f21409f33d0399d65025135958 authored over 1 year ago

Revert "MAINT: remove lsim2/impulse2/step2 docstring examples (#18472)"

This reverts commit 572213528e281826f14106b247f568cf7e3958f6.

c68272e7ce3a7bdaa6e41c748abaf1a3c68561b7 authored over 1 year ago

MAINT: remove lsim2/impulse2/step2 docstring examples (#18472)

572213528e281826f14106b247f568cf7e3958f6 authored over 1 year ago

BLD: enforce utf-8 in tools/cythonize.py, and some cleanups (#18468)

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762a349b62e59316617252c1d50371bab6fbee19 authored over 1 year ago

Merge pull request #18463 from h-vetinari/clean_isolve_II

30544c42a0e48b9d60e7e258d11cec71cd8ae2d1 authored over 1 year ago

DOC: fix issues in `svds` docstring examples that were failing in CI (#18466)

Closes gh-18381

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39692989145cf8694a885cde345584b203d99c66 authored over 1 year ago

DEP: `lsim2` deprecated in favor of `lsim` (#15929)

likewise for step2 & impulse2

5acb9564989ea45706e1d175dfd7a49479d359f9 authored over 1 year ago

MAINT: distinguish single-precision test Cases for IterativeParams in test_iterative.py

c1a819c07e4bef884b026a1242719ae0c1ebe459 authored over 1 year ago

MAINT: also remove assert_equal-usage in .../_isolve/tests/test_iterative.py

f214fa8dcc37ba2af21ce791c3d5f7daa24141a5 authored over 1 year ago

MAINT: parametrize scipy/sparse/linalg/_isolve/tests/test_iterative.py

33cb5205b86cb9f44ff73ea8b10cec2b1fae0a9b authored over 1 year ago

CI: Remove `runtests.py` and related scripts/files (#18301)

This will help smoke out where we still need to update things to Meson.

0f73f92255253ec5dff2de5ca45d8d3bdda03f92 authored over 1 year ago

MAINT: sparse: Invert the sparray / spmatrix hierarchy (#18440)

* MAINT: sparse: Invert sparray / spmatrix hierarchy

* address review comments

* Reinstate...

d87d90095e4661aed0613f1a74b7aa1eca5decc2 authored over 1 year ago

MAINT: Clean up scipy/sparse/linalg/_isolve/tests/test_iterative.py (#18462)

Co-authored-by: Ilhan Polat <[email protected]>

60ec4d7d8d4513cc00208365c2605d401ffb67d0 authored over 1 year ago

DOC: reorder MinGW-w64 and Conda/venv tabs, simply quickstart guide

Address more review comments.

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b4663cb223e86bcf1797be08b1021d3df4922bb3 authored over 1 year ago

Merge pull request #15073 from h-vetinari/metrics

TST/MAINT: Parametrize `_METRICS_NAMES` & replace `assert_raises` in `test_distance.py`

3f4d9d1e5532a6bbce96efff7fe00df68dbebd81 authored over 1 year ago

DOC: examples for `ndimage.generic_filter` (#18460)

Co-authored-by: Jake Bowhay <[email protected]>
Co-authored-by: Pamphile Roy <roy.pamphile@g...

dafd14bc6537e4b412fb05f9b0246a29c1ed2778 authored over 1 year ago

Merge pull request #18461 from mdhaber/gh18449

463c417a80262297d88eae4d6feb88aa0f6704a3 authored over 1 year ago

ENH: adding chandrupatla method to scipy.optimize for gh #7242

Work in progress

120d7898cbdfc875be40565f666037a9377cf898 authored over 1 year ago

TST: stats.test_distributions: avoid parametrization when unnecessary

b80bc0e752d8f2dfa854f63d631f9c22f1e77da4 authored over 1 year ago

ENH: stats.ReferenceDistribution: use complementary methods when availabls

078c5c42c3aed9a4d65fe77e8b395b6a29253bfb authored over 1 year ago

DOC: odr: clarify `cov_beta` is not scaled by the residual variance (#18458)

Co-authored-by: Jake Bowhay <[email protected]>

b4a59efd64992d9d02993afe36f1103bcb95ba2e authored over 1 year ago

DOC: optimize: add use of functools.partial to tutorial (#18459)

e7a5522ff0afd0943133d1cd1a54a775f83859b4 authored over 1 year ago

ENH: stats.truncexpon: improve sf/isf precision (#18449)

* ENH: stats.truncexpon: improve sf/isf precision

7d1e9af27bb2844345d612e127691149130fd1ff authored over 1 year ago

DOC: ndimage: add `distance_transform_cdt` example (#18454)

Co-authored-by: Jake Bowhay <[email protected]>

3d4ccd7fc53acb3ac89d14cba9967acae91b2948 authored over 1 year ago

DOC: ndimage: clarify Sobel transform (#18444)

Co-authored-by: Jake Bowhay <[email protected]>

25abac11e4bc17b8d6d8c7e6a595d23d54917803 authored over 1 year ago

DOC: add Installing to navbar and address Windows-related comments

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8726f8873982724b6ed45047644d94883eb7e8f0 authored over 1 year ago

DOC: start restructuring "building from source" content

6fe7be660f8ba60f5a7bdbaae6d156e1214e73b9 authored over 1 year ago

DOC: restructure the secondary pages under "building from source"

0efc4ef9ebc9b6b9f6d4838c757a5c3818eff9ee authored over 1 year ago

DOC: add info on Windows compilers, describe venvs and build steps

d24263cee15bae0d1500f4e53c56c636f0666118 authored over 1 year ago

DOC: write all "customizing build" and "background info" build docs

87bdd1a923aa392dfbec7ff09c83b2a1f57164e3 authored over 1 year ago

DOC: clean up the contributor guide and link it to "building from source"

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b23e68f9151cccfb4380c36ca0e4c3b7aac7b850 authored over 1 year ago

DOC: contributor guide maintenance, and fix cross-references

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25446280a7aa9ec6a1b62c60bfc96682a063b1f9 authored over 1 year ago

DOC: update macOS-specific build docs

61ad601bfa9fb3219c92e343cb3ac7d4047ec364 authored over 1 year ago

DOC: update info on Windows compilers

e244ec5f940224c06a26f02a1348c071d672746d authored over 1 year ago

DOC: address review comments

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3cd421992c82fed2a78ee5e067eedb8864c2946e authored over 1 year ago

DOC: add section on build parallelism

Also fixes one minor doc build warning from a missing reference.

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395c0bf6841c662b5cc16102d83c2178af3b55be authored over 1 year ago

Merge pull request #18455 from tylerjereddy/treddy_detrend_simplify

MAINT: simplifiy detrend

c632a29cb8fc1fedce11f071bbcbef9cb09f37ce authored over 1 year ago

MAINT: simplifiy detrend

* while working on gh-18286, I noticed that I could
delete algorithmic code that wasn't array AP...

c1fd4e5344220509f2654e4fd4233b669a735401 authored over 1 year ago

MAINT: optimize.bracket: don't fail silently (#17704)

39ef81242412f307a4c5c7ac0170b81465954388 authored over 1 year ago

TST: stats.ortho_group: improve determinant distribution test (#18288)

97dffcd7106f7f88284a776d4c038763672f3c5e authored almost 2 years ago

DOC: optimize.minimize_scalar and friends: correct documentation (#17705)

4b44d69cc1af438e3c7bb6f63248cf2a7e9f3a1e authored almost 2 years ago

MAINT: stats._axis_nan_policy: fix oops

92b016479615f7139549a0c6c501d9a1052cb0f0 authored almost 2 years ago

Update scipy/stats/_axis_nan_policy.py

2caec88c631462d37f87ff7c3485b54afb5aaee3 authored almost 2 years ago

DEV: use number of physical cores in `dev.py build` by default (#18451)

048be0f34f46cb14d1361e4a00f8445bf7a3403a authored almost 2 years ago

Merge pull request #18447 from tupui/doc_ci

DOC: remove references to Azure

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b542a2c1db4bd09db8065e2c889939e39d52253d authored almost 2 years ago

CI: move last Azure job to GHA (#18414)

* CI: linux 32 bit azure-->GHA

* CI: linux 32 bit azure-->G...

2f99a2cce8bccc69dd3f98cdd211f1810948161e authored almost 2 years ago

DOC: remove references to Azure.

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582eedc2bfb20c12f7ec0fe0fd18e0775c9854a7 authored almost 2 years ago

ENH: stats.t.logpdf: use asymptotic expansion for high df (#18433)

* ENH: stats.t.logpdf: use asymptotic expansion for high df

f0bc2b57b6a8547e9bbc7def4d0d76dc271084f0 authored almost 2 years ago

Merge pull request #18426 from rgommers/fix-cblas-symbol-issue

BLD: fix two `-Duse-g77-abi` regressions and a PROPACK bug

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665b39fbc86c5a4134f172e3e1cc2416b3ef993f authored almost 2 years ago

MAINT: Harmonized documentation for Interpolator classes (#18413)

reviewed at https://github.com/scipy/scipy/pull/18413

* harmonized documentation for Interpol...

acdfdfd1214a1c21434520aa12b279d4f391c4c8 authored almost 2 years ago

Merge pull request #18446 from andyfaff/bench

MAINT: fix Deb03 GO benchmark

12705fee1304d3c05f9bbb07629faa4a0c201281 authored almost 2 years ago

MAINT: fix Deb03 benchmark

5911dcdaeccef6b6537b8901e322e99fd847ea56 authored almost 2 years ago

BLD: fix yet another PROPACK build issue

The `setup.py` code is written kinda strangely, but checking the
build logs it is clear that the...

71514a19ba295365fc91b4b2019ff2f8c46ff2e6 authored almost 2 years ago

Merge pull request #18439 from rgommers/fix-xsimd-notfound

BLD: detect `xsimd` if it's installed and add to pythran dependency

878285cfa3bdaf2abaa3b8f7e51ae4a277d63b33 authored almost 2 years ago

TST: fix precision of several linalg/sparse.linalg tests (#18442)

a077de40998263544c2670c05a84b2414a1df9e9 authored almost 2 years ago

BLD: DOC: fix Sphinx doc build caching behavior for `.dev` versions (#18438)

9071a44f93b0db426ce7669dc955696b1c192b37 authored almost 2 years ago

BLD: add numpy and python include dirs to propack static library

This is needed when building with the g77 ABI wrappers, because
`npy_common.h` is used within th...

ece8c157f02ae7760c77893993ca42f7de48274e authored almost 2 years ago

BLD: detect `xsimd` if it's installed and add to pythran dependency

Fixes `xsimd/xsimd.hpp: No such file or directory`,
as reported in gh-15698 and gh-18415.

96afdd648372632847c83e92bc64b3d4c4110cf4 authored almost 2 years ago

TST: Use session-scope for fixture `metrics`

Co-authored-by: Pamphile ROY <[email protected]>

fa7047a73f88bc4d706fd945bd3fedfa1df08a4a authored almost 2 years ago

TST: split test_[cp]dist_extra_args in two to avoid redundancy after parametrization

fff039efc65800140be93a6f369c09ee94c12de6 authored almost 2 years ago

TST: parametrize on metrics in test_distance.py

This commit is best (re)viewed without whitespace changes

fcfeaf2957267f161a264240a3757d1c7f1f937f authored almost 2 years ago

TST: use pytest.raises-context in test_distance.py

4a45aa789069f55c24f7094257242c2fdf2e177b authored almost 2 years ago

MAINT: stats.mode: improve nan_policy behavior

147ba5d97e97a77e23303921dd6b9763106dbd72 authored almost 2 years ago

DOC: stats.vonmises: improve documentation (#18384)

* DOC: stats.vonmises: improve documentation

91210d7adc77cbeaa23023c7ab1185fda8e95009 authored almost 2 years ago

ENH: prevent unnecessary computation in `scipy.stats.rankdata` (#18427)

b0d1a4c6e47e5e602a3cc1862872aab565f591a3 authored almost 2 years ago

Merge pull request #18387 from ev-br/fitpack_docstrings

6b7650abb052504ee413185d80aef7298b49f690 authored almost 2 years ago

DOC: interpolate: deduplicate docstrings in _fitpack_py and _fitpack_impl

0c981584c81759d18811a84dd26bde52a6c8a47f authored almost 2 years ago

DOC: interpolate: address review comments

bd64b56a53771b5dbddf05e63ce04f74ee06de76 authored almost 2 years ago

BLD: fix two regressions for `-Duse-g77-abi`

The first was caused by gh-18264 and caused a build issue,
the second was a missing CBLAS issue ...

b8e7af79069e5aebac55426948c25d6d187a001b authored almost 2 years ago

Merge pull request #18419 from AtsushiSakai/16729_5

MAINT: interpolate: remove unused codes in `_fitpackmodule.c`.

08fb07728d8fa0eb40c45299ec4877ee9770eef1 authored almost 2 years ago

MAINT: update `boost_math` and fix a `stats.beta.pdf` regression (#18337)

Closes gh-18302

9893e0f126ec03df913031425ba362ffb736e359 authored almost 2 years ago

Merge pull request #18421 from rgommers/remove-propack-second

BLD: more PROPACK fixes, removing timer code

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e74b7a2f9cb21667d64de9dfe89722e9137821d1 authored almost 2 years ago

MAINT: optimize._bracket_root: rename and change default factor

e5a7a95ea136fd13cc29b22dc5be5a079f8d9513 authored almost 2 years ago

Merge remote-tracking branch 'upstream/main' into bracketer

98eb6c9aa6d46e7ded6713c5737bf53f4e3e6b4c authored almost 2 years ago

Merge pull request #18422 from WarrenWeckesser/genexpon-rvs-not-too-slow

MAINT: stats: genexpon is no longer too slow for test_rvs_broadcast.

5f1e3b77e714785a7307f142c9a1215d8ca051c0 authored almost 2 years ago

MAINT: stats: genexpon is no longer too slow for test_rvs_broadcast.

2e5fe7faa4011ac0bc9927d02fa578c703474302 authored almost 2 years ago

BLD: use platform-specific files for PROPACK correctly in Meson build

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817a7a3a173c06c5b11ba152027c06c7a0ec6e1a authored almost 2 years ago

BLD: remove use of timer code from PROPACK

This `second` usage caused problems not only with Intel Fortran
on Windows, but also with `-use-...

0ca99f8e978f642e994dadf0b0fb58f5c319a478 authored almost 2 years ago

MAINT: interpolate: remove unused codes in `_fitpackmodule.c`.

7af9a8b3141be2fc9eba88ea1482a4212337eb04 authored almost 2 years ago

ENH: stats: resampling methods configuration classes and example use in `pearsonr` (#18227)

* ENH: stats.resampling: add ResamplingMethod/PermutationMethod configuration classes

* ENH: ...

165183506faa88fc5ba68ca5e88ac78b64d98dbb authored almost 2 years ago

Merge pull request #18411 from rgommers/build-tweaks

BLD: an Intel Fortran fix and MinGW-related cleanups

a0312a737484c97850e1b6455d0d450ecda54a46 authored almost 2 years ago

MAINT: Allow scipy to be compiled in cython3 (#18242)

- Unpin Cython and use Cython master in the pre-release CI job
- Use absolute instead of relati...

a181fd5b75f2e05d1b7beafbb48157feaa468941 authored almost 2 years ago

Merge pull request #18416 from AtsushiSakai/issue17091

BUG: interpolate: add `mest` calculation logic for `UnivariateSpline.roots` backward compatibility

77b414f07fd0ed914e7a5e6f8de6921681d5378b authored almost 2 years ago

MAINT: signal: simplify axis manipulations in signal.detrend (#18412)

70fd4f7b3e9d184b76e39aea0be52fe4924f8e46 authored almost 2 years ago

MAINT: clearer error in `LinearOperator * spmatrix` (#18357)

Closes #11564

8a46f508cd338d3b853cefbc8b7f15f234e2c19b authored almost 2 years ago

BUG: interp: add `mest` calculation logic for `UnivariateSpline.roots` backward compatibility.

d2ad3db7e4486fc695d676d7a4285a01a2117b2e authored almost 2 years ago

DEP: signal: deprecate using medfilt and order_filter with float128 and object dtypes (#18341)

As discussed on scipy-dev list on 22 Feb 2023:

https://mail.python.org/archives/list/scipy-de...

14030ba8ad9ef0b7a277b07d7ce7341e28ca14ad authored almost 2 years ago

BLD: clean up MinGW-specific build flags.

0c7c2632d64046dd0dfb06c92640c381cbdf6d37 authored almost 2 years ago

BLD: remove workaround defining `MS_WIN64` for 64-bit Mingw-w64

This is now done by Meson itself, after
https://github.com/mesonbuild/meson/pull/11392.

6994a1436e56ae29b46a75cf32f17c3d56ab43a4 authored almost 2 years ago

DEV: allow passing arguments to `meson setup` from dev.py

dffb75c75a15d48b79708446ebc868b9d0fe1020 authored almost 2 years ago

BLD: enable preprocessor when compiling PROPACK with Ifort

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36aeeb23231bbeacece802654163dd5b3725914c authored almost 2 years ago

TST: fix test failures in linprog unboundedness test (#18410)

This is due to numpy starting to use SIMD code for `cos` and `sin`.

Closes gh-18407

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ab4e841ad0ae73a9ef0d6f1d2b43375fc2b8017d authored almost 2 years ago

Merge pull request #15841 from h-vetinari/factorial

Overhaul `factorial{,2,k}`: API coherence, bug fixes & consistent array-support

3519bb7b4980b83a1fa76af8f2c26566512db380 authored almost 2 years ago

API: correctly deal with None in factorial{,2,k}

ea6aa8f2bb2ca2fca15056e4645036aa7e33ea52 authored almost 2 years ago

ENH: check type/value of k in factorialk

836ef4295a1cb6e85f4c8cda48a0882b105af617 authored almost 2 years ago

API: full array-support in factorial{2,k}

For factorial2, the array-path for exact=False existed already.

ca87b157f92d5ca74767210dfa71f0d617d3d561 authored almost 2 years ago

DEP: deprecate mixing integers & NaNs in factorial for exact=True

82ab15bd7a4a705d2d9628e1586f135a7284e162 authored almost 2 years ago

API: fix handling of NaNs and empty arrays in factorial{,2}

a7b5669164193f676e428f2c21e8b804a020d34d authored almost 2 years ago

MAINT: simplify factorial2 approximation

4a9b32079a2ba535b661566af6e531e90b34b62d authored almost 2 years ago

ENH: add hint to factorialk errors to try factorial{,2}

64a8e85fed8756400e2dc2d658da00902b0c42e1 authored almost 2 years ago