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github.com/scipy/scipy

SciPy library main repository
https://github.com/scipy/scipy

BUG: interpolate/ndbspline: allow readonly coefficients

de9712e3fdafab34e2e46f680a660d7a1179d1e9 authored over 1 year ago
MAINT: math.prod

bf0fd08801003cc2afcf2af452e26def7e6451dc authored over 1 year ago
STY: address review comment

25e67c321834ab53a4bfc0d6f2e336049e977043 authored over 1 year ago
Merge pull request #72 from mdhaber/release_update

DOC: stats: improve 1.11.0 stats release notes

166713e0c81de74bdaf39e6e566480f5e22201fe authored over 1 year ago
DOC: stats: improve 1.11.0 stats release notes

1878b8c6a65d82a9fe02cfb439b8834a702262cb authored over 1 year ago
MAINT: integrate: revert`full_output` deprecation / result object change (#18560)

* Revert "DOC: integrate.dblquad/tplquad: update type of neval""

This reverts commit 7e4db26b...

0a37730adbeb851467ebafe67c34d6813228f2f0 authored over 1 year ago
Merge pull request #17334 from scottshambaugh/unique_quats

ENH: Map the rotation quaternion double cover of rotation space to a canonical single cover

5d793a80458439b4c60877f8f997d48f0657b833 authored over 1 year ago
ENH: sparse: Add _array version of `diags` creation functions. (#18538)

* API: Add _array version of creation functions.

* ENH: keyword-only args for diags_array.

...

763a25e17379c43529bef5e94f0a7d73ac07969a authored over 1 year ago
BUG: sparse: Fix DIA.tocoo canonical format setting (#18554)

* BUG: sparse: Fix DIA.tocoo canonical format setting

* address reviewer comment

dd443bbbc825bef9284163674d86ca928465ad3f authored over 1 year ago
fix doc strings for new public names (#18562)

6d9754182e5f65540957ade962cd3689eacd3599 authored over 1 year ago
ENH: lobpcg: remove unneeded normalization, default to in-place matrix multiplication (#17675)

The main algorithmic change in this PR is removing pre-scaling prior to
orthogonalization in th...

6414dfdc19f0ac7be90baf22cc4eec2b08bda352 authored over 1 year ago
MAINT: Adjust Pull-Request labeler configuration (#17116)

6047c8c9c70bc5f5a7201e08980cb94864c542b8 authored over 1 year ago
WIP, DOC: SciPy 1.11.0 release notes

* add draft author list, and fix broken `.mailmap`
file (Zoufiné Lauer-Bare had an invalid entry...

749310af5dece97ca82ac8b798eed8b30f7dfe80 authored over 1 year ago
DOC: sparse: Document sparse canonical formats (#18539)

* Initial draft

* Fix doc builds

* Update scipy/sparse/_csc.py

Co-authored-by: Dan Schu...

1699c7c15308e5b7f88ce00bd26cccf555cbc3fe authored over 1 year ago
ENH: sparse: add nanmin/nanmax (followup on gh-8902) (#18542)

* EHN: add nanmin/nanmax in scipy.sparse

* DOC cross-referencing to other docstring

* PEP8...

cc388749d44d4ff91c11b9ddcd218b5d312ea293 authored over 1 year ago
Replace sparse __getattr__ with properties (#18551)

* Replace sparse __getattr__ with properties

* cleanup warning

* Remove assignment to .T

745143c24c5720837482f745fb83dd03d51b7f8e authored over 1 year ago
BENCH: sparse: Add a benchmark for sparse matrix power (#18553)

* BENCH: sparse: Add a benchmark for sparse matrix power

* Add higher powers to the benchmark

15ecb5f035f1a9b83d32ef847dd1ac6b4bdcdca8 authored over 1 year ago
ENH: Update isspmatrix behavior (#18528)

* TST: Add tests for desired behavior.

* WIP: change isspmatrix semantics.

* MAINT: Conver...

8cf86bc1d56bdfc01cd8d87490678d65973fc546 authored over 1 year ago
MAINT: upload nighlighties to new location (#18504)

[skip ci]

8fb76fec42a9f51a9c347d91e94bece2dd4daa45 authored over 1 year ago
Fix warning when `nogil` is placed before `except` (#18418)

This requires Cython >= 0.29.35

de409a79f5e82f65e3c5c40d883235442773758f authored over 1 year ago
TST: speed up test_import_cycles (#18545)

This runs all the Python subprocesses in parallel

[skip ci]

e2441b9c3917bde7b3c38c31cf3377bf7a4b9866 authored over 1 year ago
Class names to enable isinstance (#18531)

* Class names to enable isinstance

Add empty class sparray to allow ID of array api.
Add fun...

3a1bd91df0e6db688a0a77955285e085dacf363c authored over 1 year ago
TST: optimize: filter RuntimeWarning that does not indicate test failure

77e2bddff0e4572893daf5a5df1d15038eac0709 authored over 1 year ago
DOC: optimize.OptimizeResult: note that not all listed attributes are present (#18550)

632ccd3d6300ad7d7f1a78fd01b8be845a7ac668 authored over 1 year ago
MAINT: optimize.root_scalar: ensure that root is a scalar (#18543)

ddb63934d2df0a6a02332321f98cc09af9dd6174 authored over 1 year ago
Merge pull request #18358 from ilayn/lu_no_fortran

ENH:MAINT:linalg:lu Cythonized and ndarray support added

4cb6e5c3d169876455b6a85d83df45baaf0dff81 authored over 1 year ago
Docs update

3cbd88b25d9e6e0cc2aef2c0d1cbec4bc7ed84f6 authored over 1 year ago
MAINT: sparse: Deprecate multi-Ellipsis indexing

db328208a7259e1aadbfb081349667e18577209d authored over 1 year ago
Fix format property in _csr.py (#18532)

* Fix format property in _csr.py

class attribute `format` was set instead of `_format` in _cs...

d3fa7d8d789c480669a95e4a72638ebc6ced5fab authored over 1 year ago
Add deprecation notices to sparse array docs (#18536)

c984fa276402642e10ed102b89b2544bb2ad7f63 authored over 1 year ago
Merge pull request #18305 from grlee77/rank_filter-axes

ENH: ndimage: add axes argument to rank_filter, percentile_filter, median_filter

813f3c109cceecfceeeb95d241689952a4a609e6 authored over 1 year ago
Merge pull request #17538 from jjerphan/contd/pybind11_dist_framework

ENH: Extending _distance_pybind with additional distance metrics (continued)

c1b803b66a3e9f0416f3feafc6d4cf24d2ec98e2 authored over 1 year ago
Merge pull request #18355 from akhmerov/linearoperator_truedivide

ENH: allow dividing LinearOperator by number

c761d2be193123748f0664b1e2982c5353e7f3dd authored over 1 year ago
BUG: FutureWarning in distance_transform_cdt (#17589)

* fix FutureWarning in distance_transform_cdt (issue #17381)
* `distance_transform_cdt()` now u...

8610b099d75cefc844835955f702f3352288225e authored over 1 year ago
TST: piecemeal updates to `test_base.py` for sparray conversion (#18523)

* test_base.py change `.A` to `.toarray()` to avoid deprecation warnings
* Change `*` to `@` ca...

53c69bcd7a32b07176535fb5d0f37e1f64de1e82 authored over 1 year ago
try stable sort in mst tree ordering (#18527)

* try stable sort in mst tree ordering

* Update scipy/sparse/csgraph/_min_spanning_tree.pyx
...

ce950d1665b6029e13bbca0629e4b67d0ccebab9 authored over 1 year ago
BUG: PR 17538 revisions

* add regression test and reviewer-suggested fix for
gh-17703

e245e63bb86e9f59c365359b3e7ece225850a41b authored over 1 year ago
DOC: add user guide page introing new sparse arrays (#18516)

* add user guide page introing new sparse arrays

* Minor fixes and language tweaks

* Fix r...

6000091cef20f0025465d2943b0367f546a5a17b authored over 1 year ago
DOC: Fix broken reference to count_nonzero in See Also. (#18526)

b644ab05d86666c7c2ca5ec7664a61b2ea495275 authored over 1 year ago
Use PyBind11 binder for pdist(metric='hamming')

Co-authored-by: Christian Lorentzen <[email protected]>

21a885d5ca2ff2800bd324c0cf7e6a2705b435a2 authored over 1 year ago
ENH Extending _distance_pybind with additional distance metrics

Co-authored-by: czgdp1807 <[email protected]>

37a3b836bae3322c97600afbc7d02ebd6303d523 authored over 1 year ago
Merge pull request #18522 from matusvalo/cython3b3

Pin prerelease pipeline with Cython>=3.0.0b3

aea3e2a8ef68713eb42d77ce00da2d98e34cc763 authored over 1 year ago
Merge pull request #18510 from rossbar/test-for-default-sparse-constructors

TST: Add regression tests for sparse creation functions.

9045623311187341a864f3aa5273d66849ce970c authored over 1 year ago
BUG: sparse: fix argmin/argmax when all entries are nonzero (#16936)

* BUG: Improve argmin/argmax test case
* Fix gh-16929
* And refactor the method for readabilit...

812da84d5aa7c0c6f4ba1b707cee5b25d20e349c authored over 1 year ago
Pin prerelease pipeline with Cython>=3.0.0b3

318a015d0fc00ea6d83054456acbd33807bbf457 authored over 1 year ago
BUG: guard against non-finite kd-tree queries (#18502)

* BUG: guard against non-finite kd-tree queries

Co-authored-by: Jake Bowhay <60778417+j-bowha...

2fe972659cda0df145ac46c84a7d98050358d506 authored over 1 year ago
Merge branch 'main' into test-for-default-sparse-constructors

6618d2d9c097f4bfe703ceb2aaec968618a0919f authored over 1 year ago
Remove indices downcasting for sparse arrays (#18509)

* Disable checking the array dtypes (squash me)

* Dispatch downcasting logic on class, add a ...

86da5cdd175b2dff2b2aaba31c07eb837a1b88b3 authored over 1 year ago
Clean up sparse array API (#18507)

* Clean up sparse array API

Makes private many functions that are used internally.
These rem...

d5d54d1cf2dd0285a3e0cb7b2b171e5e27e50979 authored over 1 year ago
TST: Add missing assert.

fda3f8214061faf3cdada0e3fbe254de5aaf8b2b authored over 1 year ago
MAINT: Un-parametrize.

c936a2fa99557d658118c82205e69fb5387cd38c authored over 1 year ago
TST: Add regression tests for sparse creation functions.

These tests ensure that the functions for creating sparse
matrices from the scipy.sparse namespa...

8c167b91475a7a8d9123d23d610ef484b78bf527 authored over 1 year ago
MAINT: Use check _is_array, not isinstance.

304abe70843ecd8d8724a94c10094a4b8c1d8e26 authored over 1 year ago
expand test_filter_axes_kwargs to also work with rank filters

2ec9a1f99e4e57df86e593b0021c7951260a92ef authored over 1 year ago
make divide(sparse,dense) result sparse and keep sparsity pattern.

dc9dd4d62b2db4111043b0c519eba9b7a781d637 authored over 1 year ago
add axes argument to rank_filter, percentile_filter, median_filter

(these three functions don't support tuple inputs for mode or origin)

688ebadf6dbd04cde6629413fe6b4676556673aa authored over 1 year ago
test rank filters with wrong footprint ndim

need both separable and non-separable footprint cases to reach all code paths

a08ecb5f32b5c2818774f9f17832a6beade344a0 authored over 1 year ago
MAINT: sparse: cosmetic updates + typing for sputils

ed58545de2a6a59578bbe044fe0b5b9e72f05bb5 authored over 1 year ago
ENH: Faster _select_samples in _differential_evolution.py

26cf23990643f63aa08d255023e48f7925f70799 authored over 1 year ago
MAINT: sparse: Generalize isshape to (optionally) handle non-2d shapes (#18505)

* MAINT: sparse: Generalize issshape to (optionally) handle non-2d shapes

* Remove redundant ...

68e69469b4404dcf2d4462a1627837120c8b1a69 authored over 1 year ago
TST: interpolate: add a regression test for bisplev integer overflow (#18501)

Co-authored-by: Tyler Reddy <[email protected]>

bbf6653a04ca36f913dca941b270960b9f349eb6 authored over 1 year ago
MAINT:TST:linalg:lu:Separate file and enhanced ndarray tests

7c452cf124a47bf6d93293876a394e0f6b1122db authored over 1 year ago
ENH:linalg:lu: cythonized and accepts ndarray

Previously depending on custom Fortran code in _flinalg module

f1864f1f9b076d18fd0fa09defbf52df10ed4bb3 authored over 1 year ago
FIX:linalg:lu:Cython vs Python int type confusion

9c4835294ec95f8b9b2795bce2a3884d14e928dd authored over 1 year ago
TST:linalg:Add old LU tests to test_decomp_lu

750fc4d947d8609e098896bc3c46a3340e401cc9 authored over 1 year ago
Merge pull request #18430 from mdhaber/gh16595b

MAINT: stats.mode: improve `nan_policy` behavior

6adfc144e63ca18a501b2f9b96991fe59f1db755 authored over 1 year ago
MAINT: tweak code comment for list of private-but-present modules (#18500)

6c1b431ccc341c5d0d5b38690c106116b61ca800 authored over 1 year ago
Merge pull request #18475 from FranzForstmayr/fix/sphinxdoc

DOC: remove warnings in doc build

6bd554274968036f409958ce42eb359e6841aa93 authored over 1 year ago
ENH: interpolate/PPoly: allow readonly c parameter (#18503)

92c5ccb3d0baa116a7274bd93cba00704fe2c67a authored over 1 year ago
Merge pull request #17212 from ev-br/__fitpack_overflows

Guard against integer overflows in fitpackmodule.c

19d7a9461e24ce110077f9b075ec745fd48bb037 authored over 1 year ago
Merge pull request #18230 from tylerjereddy/treddy_issue_18223

BUG: nan segfault in KDTree, reject non-finite input

7921d48affe31a32ddfc972573e4b49d6015e18e authored over 1 year ago
ENH:stats.betaprime.sf: override for improved precision (#18441)

ENH:stats.betaprime.sf: override for improved precision

f27ee7ad7975fad96576e6be260b378e34e3657b authored over 1 year ago
Apply suggestions from code review

Co-authored-by: h-vetinari <[email protected]>

f619f4676ae370348107a435b496ea5fba9fca8e authored over 1 year ago
DOC: fix deprecated import from scipy.signal namespace

ff0f5ab56f8969cdc336f975d54c5b671074170e authored over 1 year ago
DOC: skip warning for intentionally bad kurtosistest

386b93d93b01436bdc6026dd0cc8653382b3ac65 authored over 1 year ago
DOC: avoid taking the log of something close to 0 in signal examples

Because the bohman & cosine windows are symmetrical, using `fft(window, 2048)`
would have 0 (or ...

fcd184c574853a7681d7ed3850dfe33483feedfc authored over 1 year ago
DOC: Avoid passing floats to nbdtri which raises a warning

5e75bff63853e7825e685093518733ca6211a7ef authored over 1 year ago
DOC: Avoid passing floats to nbdtr which raises a warning

1ebf3aac42e3eecee6a6c94333e3aa0856cac6bd authored over 1 year ago
Merge pull request #18493 from WarrenWeckesser/fix-test-skip

BUG: stats: Fix the variable that is checked to skip a test.

458cc70c8ba3a00daf3f3ad1d98695b95a894c45 authored over 1 year ago
ENH: Add a Rotation.as_quat(canonical) flag to map the double coverage of rotation space down to canonical form

146cc55f0a428a9437239bfcc810902202fb1c1c authored over 1 year ago
MAINT: update codeowners. (#18045)

* MAINT: update codeowners.

---------

Co-authored-by: Tyler Reddy <[email protected]>

422fdbf0b1b15a709465bb47777af54ba81eff46 authored over 1 year ago
MAINT: PR 18230 revisions

* KDTree now raises a ValueError when
provided with non-finite data, per discussion
in gh-18230
...

746d76bd3a68f50c5cfff4f8e9c24735923719df authored over 1 year ago
MAINT: PR 18230 revisions

* style fix on the KDTree finite input
check based on reviewer feedback

a897f5c187fad48b857f1a9ce385d7937dfd3184 authored over 1 year ago
BUG: nan segfault in KDTree

* Fixes #18223, though I'd prefer not do to this (see discussion
below)

* add regression test +...

76c69338ac9151d903ebb0f8f53723b004d7b149 authored over 1 year ago
ENH: Fix quaternion inversion to work on double cover of rotation space

9826d1734d2c78d91765d69e976756f8e11932b1 authored over 1 year ago
BUG: stats: Fix the variable that is checked to skip a test.

[skip circle]

878c4e29847401bacd3d77e4b22bb94a97e7f75f authored over 1 year ago
Merge pull request #18482 from andyfaff/floaty_nm

MAINT: ensure Nelder-Mead respects floating point type

31c90558c44334347d958621aa38dd941d98bc06 authored over 1 year ago
DEP: signal: deprecate importing window functions from signal namespace (#18489)

fbe7252dc9edd95b00e4d137d623bb38af8176d1 authored over 1 year ago
MAINT: add an explanatory comment

fcdc0f1bae69c4d59b8703fdbc325c4543dae427 authored over 1 year ago
add a test for _ScalarLinearOperator

Test that its prefactor is not mutated when it is multiplied by a scalar.

161e4c5905b35a106b984f8d72946a31dba181e5 authored over 1 year ago
MAINT: interpolate/fitpackmodule: refactor overflow-detecting integer multiply into a function

1d394f2baac0bb24487c1895527639922c3bfb8a authored over 1 year ago
MAINT: interpolate/fitpackmodule: guard for the fortran integer overflow, too

6b527559ff34e28113e64e4e682c701391fc8f96 authored over 1 year ago
MAINT: interpolate/fitpackmodule: guard for int overflow in surfit

780206746db62a279906ea2316a518b88e89863d authored over 1 year ago
MAINT: interpolate/fitpackmodule: centralize PyErr_Format on overflows

fc3c25a8ea004c442de8a095c454cc5e1f78b196 authored over 1 year ago
Merge pull request #18112 from tupui/qmc_seed

FIX: reset semantic in `QMCEngine.reset`

00f4e2e2f61769910b1b28f65871f82e17d7f8cc authored over 1 year ago
DOC: remove already-resolved deprecation warning filter (#18486)

cdd65461d090926bd006884932e6c7d724434980 authored over 1 year ago
PEP8

ce2bea6fad87ee4a6ea9d2d4e65abc7ceb0733db authored over 1 year ago
Merge pull request #18429 from rgommers/build-docs

DOC: rewrite all build docs and restructure build/contributor guide

[skip ci]

bae3476b8a245866f5f7f1b824a0a7919f3880a9 authored over 1 year ago
MAINT: ensure Nelder-Mead respects floating point type

7ff25b969bf6492ef4be0af144dba8eba49e1220 authored over 1 year ago
TST: stats/optimize: filter warnings in tests (#18476)

[skip ci]

79f5cd1ec0a1ba37ad4c295dedb5543d368be438 authored over 1 year ago