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github.com/scipy/scipy

SciPy library main repository
https://github.com/scipy/scipy

update nonlin tests for sparse arrays. Make code work

2e2239bb2414a073c82089464998205223dd5aba authored over 1 year ago
CI: fix issue with the last setup.py based job, due to Cython 3.0

[skip cirrus] [skip circle]

1fd1d3d97e49a4c503c3e86d2b36dadcc51071ab authored over 1 year ago
CI: Add prerelease build with 64bit OpenBLAS nightly (#18889)

[skip ci]

7cff5626945e599cca09084105ed7c738f9e3217 authored over 1 year ago
DEP: deprecate positional arguments for some methods in signal._fir_filter_design (#18932)

Those that have upcoming signature changes anyway

b0436c1adf8e030b8528265708f75c3def2a8e8f authored over 1 year ago
DEP: deprecate positional arguments for some methods in sparse.linalg._isolve (#18934)

Those that have upcoming signature changes anyway

c8069d94d5b2eb33193977b3744ed36105cc4cf7 authored over 1 year ago
DEP: deprecate positional arguments for stats.kendalltau (#18936)

8e4ab4fb680432890af4d7ae139d34939f3d9844 authored over 1 year ago
DEP: deprecate positional arguments for linalg.pinv (#18935)

a115b487f39e3bbd02a6d3eee91c13b3139b2707 authored over 1 year ago
CI/BLD: create cp312 wheels (#18937)

[wheel build]

da3639e59a943e925bc9c8ed48e4249712ebd0cd authored over 1 year ago
Merge pull request #18843 from h-vetinari/positional

DEP: vendor sklearn's mechanism to deprecate passing kwargs positionally

a36ab972bda198b47d3990ff54053f944e2b47ed authored over 1 year ago
MAINT: cleanup redundant tests

7670876d5a02f8110a76f3f0592c558320e75de2 authored over 1 year ago
ENH: _lib._util: make _lazywhere compatible with Array API

332ea941cc948547d1764f8838f8c989d263fab7 authored over 1 year ago
CI: test with Python 3.12-beta (#18689)

404d3df57ce63581b076077a04a918d880d4f862 authored over 1 year ago
ENH: add stirling2 function to `scipy.special` (#18103)

* add pure python implementation of stirling2

* removes the c version and implements a
...

eff66d09a96f951b5ebb7b970f3957d2d27caeea authored over 1 year ago
Merge pull request #18924 from AnirudhDagar/fix_py312_build

c20de65ab643a6eb4329bfc3f722a656cd6f4dd3 authored over 1 year ago
MAINT: Use deb_system scheme to match meson's path inference & fix aarch64

a1851a6fb6401331519e96aee6a6bc23d17a65d3 authored over 1 year ago
TST: optimize._bracket_root: more tests

e2a380cdaf7d6cc183168dad57c1966945b56e38 authored over 1 year ago
BUG: lsq trf gives x=1e-10 if x0 is near a bound (#18896)

* BUG: lsq trf gives x=1e-10 if x0 is near a bound

Closes #18793. Previously, if x0 was withi...

ba761d8c0ff08d836834e1a87af3565f5bd6b7d9 authored over 1 year ago
MAINT: optimize._bracket_root: fix bugs, add tests

35503458dd7ef28e65ac1e93d5bcb9a5855630e0 authored over 1 year ago
BUG: Fix python3.12 distutils dev.py build

Fix gh-18689 gh-18922

python3.12 removes distutils and scipy dev.py uses
distutils for the meso...

f0ce57bf1eb5ffcedcc75843a170756a0cf404c6 authored over 1 year ago
MAINT: optimize._bracket_root: restore stats._continuous_distns.py

f581ffa516acfb00123bfb3a9948a151252ad443 authored over 1 year ago
MAINT: optimize._bracket_root: update _minimize_chandrupatla

b60d191e3463e4a9700c74fcda9fe11c8e1286ea authored over 1 year ago
Merge remote-tracking branch 'upstream/main' into bracketer

ab46534385381b8cd1a7e695898c63b5e519408d authored over 1 year ago
MAINT: optimize._bracket_root: update chandrupatla

4ebbbbf991e5c181fc1c1623a6115b2120c951f4 authored over 1 year ago
MAINT: optimize._bracket_root: improve test_basic

5a5aed75593d3d697e9f84ec04675dd64407f9f2 authored over 1 year ago
DEP: deprecate positional arguments for integrate.simpson

b542c83d320bc6eb8ed8074d38cc2b5e0ce39e76 authored over 1 year ago
DEP: vendor scikit-learn helper for deprecating positional arguments

1:1 copy from scikit-learn 1.3

dee2297a5317b43a64ae742ffd7d4c3c5fd54f0c authored over 1 year ago
DEP: adapt sklearn-helper to our needs

Co-Authored-By: Jake Bowhay <[email protected]>

4132e9b77634d08f247c00cba07deb15a9708c6a authored over 1 year ago
TST: optimize._bracket_root: update tests

2fe1ac4b668eb8d106ac4b314fb5c207368fcecb authored over 1 year ago
MAINT: optimize._bracket_root: return tight bracket

3f41bbadd3423cc6a8fb7239c28368e123b666a6 authored over 1 year ago
MAINT: optimize._bracket_root: customize result object

ca8acc9b848b6a8058b629bef96adf4dbe6e376f authored over 1 year ago
ENH: add simplified fast numerical inversion to stats.sampling (#17955)

defcb37766e99d77e1997728d65a890efe895074 authored over 1 year ago
ENH: optimize._bracket_root: rewrite with scalar optimization algorithm framework

137ba1eadb49b2d30c7438a61d13ca2829437b61 authored over 1 year ago
DOC: stats.f: clarify meaning of DOF in notes (#18905)

* DOC: Clarify DOF in f-distribution notes
* DOC: Mention relation of f-dist to chi-squared

cfa8bb3fb5ac573c7a682c08af25c9779a056b12 authored over 1 year ago
ENH: Enhance `dev.py` by adding command to query PYTHONPATH (#18914)

72d1bde9ddf75b67817cefb0fbba267929b04c2f authored over 1 year ago
DOC/MAINT: `special` doc fixes (#18911)

* DOC: correct section order throughout scipy.special

* DOC: add parameter/returns sections t...

97e4fdbd3e84c9e5aeb091dd4dbe57b55e668900 authored over 1 year ago
DOC: from CONTRIBUTING.rst link to SciPy website (#18910)

Co-authored-by: Pamphile Roy <[email protected]>

2c05d12f19f6de515b205671d95b7698ad45bcee authored over 1 year ago
ENH: optimize: vectorized minimization of univariate functions (#18829)

ec142827fb1ecffae763de82fa29a534d9f6a7bc authored over 1 year ago
ENH: stats.kappa3: override _sf/_isf for accurate small probability mass (#18822)

* ENH: stats.kappa3: override _sf/_isf for accurate small probability mass

Co-authored-by: Ma...

909baa6b21a884afa8f8e1f8f3226fa9e55bc2ad authored over 1 year ago
DOC: soften wording on import guidelines, mention lazy loading (#18830)

[skip ci]

422ae7150123feb11b1deb83c6bad61ed3055251 authored over 1 year ago
DOC: fft: fix typo in `_helper.py` (#18901)

[skip ci]

572f92f27b9beba58ee25e8d2e619130527fd665 authored over 1 year ago
MAINT/DOC: fix docstring issues in ndimage (#18886)

* MAINT/DOC: remove docstring issues in ndimage [skip actions][skip cirrus]

* Add docfiller [...

c5dfedb6be09f2622b3c477f3ed77a87a1af24c3 authored over 1 year ago
DOC: interpolate: link interp1d docstring to tutorial (#18894)

* DOC: linking interp1d docstring to tutorial

* [skip actions] [skip cirrus] DOC: include sta...

778b1a9527beefd1a9e443f77be1bd04865e3c8f authored over 1 year ago
DOC: tab sync based on same tab name using `sync` statement (#18887)

b6e62c7c457a22c220f54b1cdcf56541a5aac563 authored over 1 year ago
DOC: add more cross compilation details (#18873)

[skip ci]

Co-authored-by: Ralf Gommers <[email protected]>

e6e842dc26ba859662d856508ff54a614bf76d39 authored over 1 year ago
ENH: add `fit` method to `multivariate_normal` (#18361)

44d88b288ae6226a4e113997718bc7a146d986fd authored over 1 year ago
MAINT: Set RAM requirement for Codespaces (#18888)

[skip ci]

bd00dfbf2b8f0e5a936e80597beda97338b6ee35 authored over 1 year ago
DOC: minor issues in install commands (#18885)

e3134f5ab9a91d83bf73cb8b9aa6a83b2736503a authored over 1 year ago
DEP: scipy.stats.stats: clarify deprecation warnings (#18835)

* DEP: add common infra for private-but-present modules

* TST: add generic test checking priv...

0581177bfd763a2ef74dd952b302ea4dfffb736c authored over 1 year ago
ENH: stats.wasserstein_distance: multivariate Wasserstein distance/EMD (#17473)

ENH: stats.wasserstein_distance: multivariate Wasserstein distance/EMD

28eecdb22ec5e3e621dd515bccc158f2f7b25b4c authored over 1 year ago
Merge pull request #18872 from fsaad/main

DOC: stats.fisk: add relationship between Fisk and logistic distributions

887f7459cc724fc6b2041944e1720d8cb92749c2 authored over 1 year ago
Add relationship between Fisk (log-logistic) and logistic.

7863c02792361d4cf153d9f3d39c209d41f4ec48 authored over 1 year ago
Merge pull request #18863 from j-bowhay/18861-followup

DEP: remove extra np.deprecate and add docs back

2ff5a46ec3ecc86427e73801b7c6151ed29b6dea authored over 1 year ago
MAINT: stats.burr12: moments are undefined when c*d <= order (#18840)

Co-authored-by: Tirth Patel <[email protected]>

bff543fe89e4398589f54657aea976c926c36ecf authored over 1 year ago
MAINT: fix refguide check

553d79a9ec5130631fa8270894e887e685ad876d authored over 1 year ago
ENH: stats.anderson_ksamp: re-add permutation version of test (#18470)

Co-authored-by: Tirth Patel <[email protected]>

64f017c4d675a7047e9a63631eaedcc53cbbf121 authored over 1 year ago
ENH: stats.halfcauchy.fit: override for speed and accuracy (#18824)

ENH: stats.halfcauchy.fit: override for speed and accuracy

02ef27ea8eb59860236cd270c4c7975aa72dbb30 authored over 1 year ago
MAINT: stats: fix NumPy DeprecationWarnings (#18785)

525776eb00a8a921fcc71967b49aaa192c1f33a5 authored over 1 year ago
ENH: stats: add Baumgartner-Weiss-Schindler test (#18363)

Co-authored-by: Matt Haberland <[email protected]>

84e240bd0ef220d3cf6afa680a163e75d70211e6 authored over 1 year ago
Merge pull request #18833 from ThomasLoke/lsap-gil

ENH: optimize: release the GIL while computing the LSAP solution

[skip ci]

19212c41743e1525f078dee2021f9feadb4207c9 authored over 1 year ago
ENH: add machinery to support Array API (#18668)

See api-dev doc updates in this commit for details.

Co-authored-by: Ralf Gommers <ralf.gommer...

bd8ef0c59cea2a065eca8e4d9a9e8f7b0a5f1792 authored over 1 year ago
DEP: remove extra np.deprecate and add docs back

71c3dfa102894117331c88bde2487303d2294c64 authored over 1 year ago
Merge pull request #18861 from rgommers/remove-deprecate

MAINT: avoid `np.deprecate` and `np.core`, add `normalize_axis_index` util

2bf959a0c4840fbc1e80d0e0e2a48a75c06f02fd authored over 1 year ago
MAINT: remove usages of `np.Inf` in favor of `np.inf`

[skip cirrus] [skip circle]

978421035abca55f8300d877c46ac7895cbf7bcb authored over 1 year ago
MAINT: add `normalize_axis_index` to `scipy._lib`

Stop using it from `numpy.core`, since that's a private module
Also remove some other `numpy.cor...

47891e0d0c0c6eb732a0eb44d12dbb3d605971d7 authored over 1 year ago
MAINT: remove usages of `@np.deprecate`

It will itself be deprecated in numpy soon, xref
https://github.com/numpy/numpy/pull/24154

7cdb74f126c8c8364a1eff8546f73db0891119cc authored over 1 year ago
Merge pull request #18858 from rgommers/hierarchy-cleanup

2158afe5eb317e744524a23c6d8e6a4b39de5bfe authored over 1 year ago
MAINT: Remove more runtests.py stuff (#18856)

[skip ci]

e92661e648d43f254cb5e6fd741bb7f4d0267a98 authored over 1 year ago
BUG: cluster.hierarchy: remove `_copy_arrays_if_base_present`

This internal utility function was quite odd and effectively broken.
Its stated purpose in code ...

1d4d2535498a6087f745177636e7592d0641e8ac authored over 1 year ago
MAINT: clean up unused code and avoid extra copies in cluster.hierarchy

Spell some conversions uniformly as:
```
np.asarray(Z, order='C', dtype=np.float64)
```
rather t...

70f9780678fe770593facec4079a8af437f23066 authored over 1 year ago
Merge pull request #18783 from WarrenWeckesser/hypsecant-sf-isf

ENH: stats: Implement _sf and _isf for hypsecant.

da584a37235b761e10e365b2cee3922277bc808c authored over 1 year ago
Revert "BENCH: Add benchmarks for special.factorial/factorial2/factorialk (#15664)" (#18853)

This reverts commit ef53758efffec6cd8e225f54686894d1b54b8ba3.

0ffff14e5345f36d0eedbfa33f09aed663fb5f94 authored over 1 year ago
MAINT: signal: lighten the notation in lsim (#18854)

change dot(A, transpose(B)) into A @ B.T etc

9302acdecbf836587f81297e469c77e600905ce8 authored over 1 year ago
DEP: linalg: use _NoValue for eigh/eigvalsh positional argument deprecation (#18826)

* DEP: linalg: use _NoValue for eigh positional argument deprecation

* DEP: fix version numbers

4bf18d332455f498b760e62657d8203d61b3c496 authored over 1 year ago
ENH: Added compiler args and link_args (#18848)

Backport of https://github.com/numpy/numpy/pull/24094/commits/15d93b483d3e0a98b690030c3a45fe103d...

64a533e511753e71b21956dc2c71f89eb9c28c19 authored over 1 year ago
Merge pull request #18847 from tylerjereddy/treddy_ptp_no_method

MAINT: ptp no method for NumPy 2.0

bcf81dd3b7b14896dcd35b2b14bc1f54e2365c33 authored over 1 year ago
MAINT: ptp no method for NumPy 2.0

* as suggested in NEP 52, in preparation for NumPy 2.0,
stop using the `ndarray` `ptp()` method-...

3526fb5aeebe396c3f8c9fe10514aa7eab788a37 authored over 1 year ago
ENH: Short-Time Fourier Transform (STFT) Enhancements (#17408)

* new/improved ShortTimeFFT class

---------

Co-authored-by: endolith <[email protected]>

e1d3f796fa705fb9fcf5443241aca73873348b71 authored over 1 year ago
Merge pull request #18670 from ev-br/filter_ord

MAINT: signal: deduplicate *ord functions

bdc163d40ab5707cdfe4f95568a12cef9cdbb6be authored over 1 year ago
Merge pull request #18841 from tylerjereddy/treddy_numpy2_prep_sctype

MAINT: *sctype* replace NumPy 2.0

ad1e339fc46ef8785a515e119a8a2ca5a324a5f9 authored over 1 year ago
ENH: optimize.bracket_root: begin to convert to scalar_optimization_loop

702e3a951b0e61b192ac5a46570fd1ca9adb2b7b authored over 1 year ago
MAINT: *sctype* replace NumPy 2.0

* replace `*sctype*` NumPy usage per
https://github.com/numpy/numpy/issues/23999
and NEP52 in pr...

609e7cf59136e72090d285c38145bbbce22f95df authored over 1 year ago
TST: signal: tweak tests

8f0d1ed29afe37baac1834aaff86f6f808805c31 authored over 1 year ago
Merge remote-tracking branch 'upstream/main' into bracketer

e48301a634dc50a7cde9c9d06a7381951adf5d09 authored over 1 year ago
DEP: linalg: sharpen deprecation warning for pinv {,r}cond (#18812)

56b761f126e4a9f00f6303fd643806da88354044 authored over 1 year ago
Merge pull request #18831 from LemonBoy/fix-18398

BUG: io/matlab: Fix loading of mat files containing fn handles when simplify_cells=True

e4dec2c5993faa381bb4f76dce551d0d79734f8f authored over 1 year ago
MAINT: Use `sparse.diags` instead of `spdiags` internally. (#18802)

* TST: Modify sparse.eye() tests to include boundary validation.

When the diagonal offset exc...

ddee711eb0ab3f7985f2af738eab230898702e2f authored over 1 year ago
BLD: copy `cython_optimize.pxd` to build dir (#18810)

Closes gh-18792

[skip cirrus] [skip circle]

---------

Co-authored-by: Ralf Gommers <ral...

3c89445b6439f3ce7bffc4cf11c6407c39faedc5 authored over 1 year ago
BENCH: add optimize_lap.ParallelLinearAssignment benchmark

Benchmarks the time taken to compute the solution to
multiple independent LSAPs.

77c33ca97fef33ff5b5d5b8d9103f75642b6433c authored over 1 year ago
ENH: optimize: release the GIL while computing the LSAP solution

The LSAP routine does the bulk of its work in
solve_rectangular_linear_sum_assignment() using C-...

6c7a997817661c9a4b383dedb1f048f22c5d971c authored over 1 year ago
ENH: stats.lomax._isf: override to extend domain (#18823)

* ENH: stats.lomax._isf: override to extend domain

ad91cc3fdc3c67c693365a1c98a1c6b06e79d51b authored over 1 year ago
io/matlab: Fix loading of mat files containing fn handles when simplify_cells=True

Closes #18398

0953f213458ddcd0c64280376ae5e2e97bfa8705 authored over 1 year ago
TST: strengthen test by making it 2 dimensional

3276a28662138cb58cd97de3f512a43595090a1c authored over 1 year ago
DOC: update windows instructions and move conda/mamba (#18814)

[skip actions] [skip cirrus]

3cddbd3ff32cd530eebd83cf9cda77b83e20b0aa authored over 1 year ago
ENH: stats.pareto.isf: override to extend range (#18820)

* ENH:stats: Add _isf method to pareto

* TST: stats.sf/isf: add stronger round-trip test for ...

79a61f07716b10f4906c29f14131545c7397af64 authored over 1 year ago
TST: signal: improve comments, bump tolerance

0304ec817a61236cadd54ac173190eecd5f5e2a4 authored over 1 year ago
MAINT: signal: close an if-elif chain with an else

14b9ca74137382b4baf5c3419fcc88505606dc04 authored over 1 year ago
MAINT: signal: fix extra import

1ec981bcb4d75d783fb86e3342d3783eb98df3c7 authored over 1 year ago
BUG: signal: use correct filter kind in filter order optimization

bdfa4683f930a5d1daa149aa20ec9e877d47c25c authored over 1 year ago
MAINT: signal: deduplicate finding the nat frequencies

331363b01b31077afcc1ab99894fa4125ecb71ea authored over 1 year ago
MAINT: signal: dedupe pre-warp frequencies

3894e3dae375ef017ef86673d73dd601d717148d authored over 1 year ago