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github.com/scipy/scipy

SciPy library main repository
https://github.com/scipy/scipy

MAINT: sparse: Un-deprecate getnnz() (#20033)

* Un-deprecate getnnz()

* Remove deprecation test for getnnz

c2806e4ec7651fbfa401829884476a9036988579 authored 12 months ago
TST: use assert_allclose in test_bootstrap_alternative (#20047)

Test fails on some platforms with assert_equal, so use assert_allclose with a tight tolerance

85e2fd2caf361528781e237d7ce04904e4a9f800 authored 12 months ago
Merge pull request #20044 from andyfaff/matrix

TST: _ConstraintWrapper returns a violation of the correct shape

1925754c08e654efca1f56891a25735d4f08f0fd authored 12 months ago
DOC: add missing np. in tutorial (#20045)

af8374b97c349e55c82087233b3137311728859b authored 12 months ago
TST: vectorised violation call

13739fbeac078713d4d732e1223764eed7fe6b45 authored 12 months ago
MAINT: make sure the constraint is a vector

2972a0d3ee2966e474e771334ff5a3e7436441c7 authored 12 months ago
MAINT: make sure the constraint is a vector

496fd871f61fbc6498916418c0d4a8f36b0735f6 authored 12 months ago
MAINT: _ConstraintWrapper returns a violation of the correct shape

51c647347b17388b099cfeb9a31119f26f818985 authored 12 months ago
TST: _ConstraintWrapper returns a violation of the correct shape [skip cirrus]

679944ca082dfed2c1b244a7b6a594862e999e2b authored 12 months ago
ENH: sparse: foundation for 1D arrays (add test suite, round up edge cases) (#19853)

* prep more 1d formats: update base and add test_common1d

* adjust based on review

* raise...

1e3e8c603126f1bf2e8febd567cfd374d169283b authored 12 months ago
ENH: stats.loglaplace.fit: use MLE formula when floc is provided

* ENH: use laplace.fit() in loglaplace.fit() when floc is given.
* TST: use _assert_less_or_clo...

a95455a6b1064a7cea8c136d4abf74266e5fb49d authored 12 months ago
MAINT: sparse: change method names _mul_* to _matmul_* all but _mul_scalar (#20004)

* change names _mul_* to _matmul_* all but _mul_scalar

* remove DIA._matmul_multivector

93eafa7bfd83a5fbff86a79399b2010a1f037c13 authored 12 months ago
MAINT: integrate._nsum: adjust algorithm for determining number of direct steps to take (#19763)

5892d5e1bbdb94d27e0e33c9cff3d0060204ab43 authored 12 months ago
MAINT: scipy.stats: replace `_normtest_finish`/`_ttest_finish`/etc... with `_get_pvalue` (#19780)

* MAINT: scipy.stats: replace _normtest_finish/_ttest_finish with _get_pvalue

* MAINT: stats:...

0339b0deb1bcf3efbd5d20987d58127f53d34e5b authored 12 months ago
MAINT: Adjust some comments in special C++ library (#20032)

* Add headers noting these are translations

* Add missing include config.h in lambertw.h

-...

45aa1922178279cf82c4d9198a0e6cdbed7d0314 authored 12 months ago
Merge pull request #19741 from mdhaber/friedman_anp

ENH: stats.friedmanchisquare/brunnermunzel: add axis / nan_policy / keepdims support

a6587b6c1a806d384b292592423693e4c573882c authored 12 months ago
MAINT: sparse: change coo_matrix.indices to coo_matrix.coords (#20003)

* change coo_matrix.indices to coo_matrix.coords

* spell out coordinates in docs and comments

f6543ae758b17e7920a54d46f14dffeafde9394b authored 12 months ago
MAINT: move elementwise algorithms and framework (#19808)

* MAINT: _lib: move elementwise algorithm framework

* MAINT: move elementwise algoirthm imple...

a69ae2374f4561ae03b07f37b92c7d5fb1919072 authored 12 months ago
ENH: stats: add axis/nan_policy support to `f_oneway` and `alexandergovern` (#19980)

* ENH: stats: add nan_policy, masked array, and tuple axis support to f_oneway
* ENH: stats: ad...

d678ee341009bb0144eb142dbdc320a54213e044 authored 12 months ago
Merge pull request #20020 from tylerjereddy/treddy_issue_20014

TST:signal: TestCorrelateReal overflow shim

eb6d8e085087ce9854e92d6b0cdc6d70f0ff0074 authored 12 months ago
ENH: stats.boxcox_llf: improve numerical stability around zero in boxcox_llf (#20021)

* ENH: stats.boxcox_llf: improve numerical stability around zero

4b0363716ef5a8229f6abddaf206fea318a2d6b7 authored 12 months ago
MAINT: stats.loglaplace.moment: ensure non-negativity (#20017)

* MAINT: loglaplace moment should be non-negative.
* MAINT: make explicit the condition that le...

673a15da1366012f1e701f9c496fa465c2a16e50 authored 12 months ago
DOC: update release docs to reflect new version banner (#20016)

---------

Co-authored-by: Pamphile Roy <[email protected]>

e7d71d6d68271b47617286bc30d5926869d73227 authored 12 months ago
TST: TestCorrelateReal overflow shim

* Fixes #20014

* we can avoid the integer overflows with newer
NumPy by being really sleezy and...

fea5be86c1c22e715b06b64c9cf092bdeb122aab authored 12 months ago
DOC: stats.loglaplace: describe relationship with Laplace distribution (#20018)

- DOC: stats.loglaplace: describe relationship with Laplace distribution

ad556fc23bb3c78c2a6728db1fb9652d69600cad authored 12 months ago
ENH: integrate._tanhsinh: support vector-valued functions (#19545)

* ENH: begin to preserve shape in scalar algorithms

* ENH: integrate._tanhsinh: add preserve_...

274ff113fb28110a526dfac7107d914c201f4f1c authored 12 months ago
BUG: Add proper error message for `ShortTimeFFT` for onesided FFTs and complex signals. (#20010)

* Raise ValueError in `ShortTimeFFT.sft_detrend` if parameter `x` is complex and `ShortTimeFFT.o...

fe967c70d783197511e1b0d45a0c34e0f1b5f8ba authored 12 months ago
ENH: stats.goodness_of_fit: support custom statistic (#19975)

* ENH: stats.goodness_of_fit: support custom statistic

72c880bf845e0506b3f344a9bbd02b16115f6f30 authored 12 months ago
Merge pull request #19961 from melissawm/add-banner

DOC: Add version warning banner to documentation

17f2fbe7bdba8a1b47011da117222be43f04c7c2 authored 12 months ago
Merge pull request #20005 from Carreau/extra-all

MAINT: Remove partial from `__all__` (removed from submodule)

9099526784249124b25019ddb6b155928935ff60 authored 12 months ago
MAINT: Remove partial from `__all__` (removed from submodule)

It is still present in `__all__` despite not being importable.
This can lead to error message fr...

87746467230b7ef18011646a1779972a9f962fe0 authored 12 months ago
Merge pull request #20000 from ev-br/ndbspline_followup

MAINT: interpolate: address review comments on NdBSpline/RGI

ca0acabbf30ca70a6fae20f039e034b2ba01feed authored 12 months ago
Merge pull request #19997 from mtsokol/np-array-copy-keyword

MAINT: Adjust the codebase to the new `np.array`'s `copy` keyword meaning

e2eb5b753597afae2a1a3ba6808a591e0a0aee6c authored 12 months ago
MAINT: interpolate: address review comments on NdBSpline/RGI

17984bc37ef9243a652d84f79bdd295f2c591bee authored 12 months ago
MAINT: Adjust the codebase to the new np.array copy keyword meaning

968ec6d59faeaa077c283c90098ee61dcc984221 authored 12 months ago
Merge pull request #19995 from tylerjereddy/treddy_fork_mp_deprecation

TST, MAINT: test_immediate_updating fix

4fe5a7d589e911ad48bfb8fede3ddee63c0b129a authored 12 months ago
MAINT: use assert instead of assert_

2f95d9abcc2061fa027c63cafcb50384ac36855d authored 12 months ago
TST, MAINT: test_immediate_updating fix

* Fixes #19848

* Safely forking from a multithreaded process is problematic
and deprecated in P...

c45969edc6196c08756577e4a8a658563bf8bddd authored 12 months ago
ENH: use NdBSpline in RegularGridInterpolator to speed up evaluations (#19633)

* use NdBSpline in RegularGridInterpolator to speed up evaluations

4cfd7518526f0c2cd3b1f2cdaab7393d986b72d5 authored 12 months ago
Merge pull request #19971 from yetinam/signal_filter_fs_validation

ENH: Input validation for sampling frequency in signal.filter (Closes #14450)

5e3f6da3c9b3c7707a38ef99a5aa8d7f53e824a7 authored 12 months ago
MAINT: Translate Digamma from Cython into C++ (#19834)

* Translate digamma function to C++

* Fix typo (reversed inequality) and remove extraneous wh...

4ecf5638c36c3a87b473056f5fffecfeddffd368 authored 12 months ago
MAINT: Translate loggamma from Cython into C++ (#19496)

* Rewrite csinpi in C++

* Rewrite ccospi in C++

* Add header comment for _trig.h

* Rewr...

96871841bdbb121729f63837709e725a6e285b7f authored 12 months ago
Merge pull request #19981 from fancidev/test-gamma-typo

TST: correct typo in TestGamma.test_fit_mm function.

62d2af2e13280d29781585aa39a3c5a5dfdfba17 authored 12 months ago
DOC: stats.invgauss: document a common alternative parameterization (#19977)

* DOC: document a common alternative parameterization of invgauss.
* DOC: use different symbol...

c1de42071f36172425ac5a293fcd6a23e165e3e2 authored 12 months ago
Merge pull request #19716 from h-vetinari/factorialk_approx

ENH: enable approximation for factorialk

f0fe4c9e8a26ef44e45be21e894a03f1f8ba27fc authored 12 months ago
TST: correct typo in TestGamma.test_fit_mm function.

0bece85dadc3132641a687cc35ecfb3d5b32f545 authored 12 months ago
ENH: stats.gamma.fit: use analytical formulas (#19932)

* ENH: use explicit formula for scipy.stats.gamma.fit('mm')
* TST: add test case for scipy.stat...

39e8aeefc397e72a2ce454032477f09c7ec6a65b authored 12 months ago
MAINT: make naming of auxiliary functions for factorial{,2,k} more consistent

cdcabb3bee33b5f9495ce848d4845996ed6b19b8 authored 12 months ago
MAINT: avoid unnecessary calculations in factorialk-approximation

45c997cd002c6b3517c9cfb4d4098909e0d7c1f1 authored 12 months ago
ENH: enable approximation for factorialk

As a quick proof for the general formula (aside from all the tests passing),
let `n = m*k`. Foll...

6a027ff89f8a7e42ae9b2c48d28561befb8c751f authored 12 months ago
MAINT: unify factorialx approximation function

66c1f105569bf4761378919d033eae3904ecfbf8 authored 12 months ago
MAINT: Avoid redundant mask computation in _factorialx_approx_core

Co-Authored-By: Jake Bowhay <[email protected]>

5c3405518976ba64ed4d35bfd2124d6fc77894aa authored 12 months ago
DOC: fix autosummary for scipy.signal.ShortTimeFFT.t/T under MacOS. (#19978)

4992aaa3a80e427b01694d7b5cf6857a5b6f761e authored 12 months ago
ENH: Input validation for sampling frequency in signal.filter (#14450)

349a0dfcf8fc6e2bf4ad8fdc5e4246eb2f33bdcf authored 12 months ago
Merge pull request #19969 from melissawm/css-new-theme

DOC: Fix landing page images for dark theme

19b4fe03c939c7b6becb1757cff9c38da929aee7 authored 12 months ago
DOC: Fix landing page images for dark theme

[docs only]

e12a62415a69076077d0cab8a25256835c39f7d5 authored 12 months ago
DOC: Add version warning banner to documentation

[docs only]

dadaa012e90d0dde8cb1d112fe14ff925a4df1de authored 12 months ago
DOC: update pydata-sphinx theme (#16660)

Pick up improvements from several recent pydata-sphinx-theme (PST) releases,
for example around...

e8b043df1d586d9df9fed96add1a536859f1cb8c authored 12 months ago
BUG:sparse.linalg: Add early exit to gmres when x0 already solves problem (#19952)

11ce9d798116092189a25d3799a6bcecfdedbc53 authored 12 months ago
Merge pull request #19950 from RuikangSun/patch-1

23eee16a3acf654ae254fbd3a9a57975fa3272e0 authored 12 months ago
DOC: stats.logrank: fix typo that affect survival curves in manual

Due to typo, the survival curves here ( https://docs.scipy.org/doc/scipy/reference/generated/sci...

c129e10798160e886cc747fe386a55007ec90efe authored 12 months ago
BUG:special:amos: Fix typo in `amos_mlri` (#19947)

77a3365f2155dd6a623aa838ecbff487581eb229 authored 12 months ago
Merge pull request #19945 from rgommers/fix-configpy-raw

BLD: fix issue with escape sequences in `__config__.py`

c242907c5a189ce82d29ba9b26b8f00756db62e0 authored 12 months ago
BLD: fix issue with escape sequences in `__config__.py`

Reported in https://github.com/conda-forge/scipy-feedstock/issues/264:
linker args contained a `...

4f96d3a7d0cc70db67aa2050f4163f415a5b4569 authored 12 months ago
BUG: Correct handeling of inf support binomial (#19944)

Return NaN when support is infinite for special binomial distribution
Avoids corner case with i...

a1a3804582539a0e20708ab023345f9f6f670ea1 authored 12 months ago
Merge pull request #19942 from adamjstewart/deps/hypothesis

hypothesis: document minimum required version

adc9b901128ae7cb9b647947dcbc8ccd3ea9b1f5 authored 12 months ago
set 1d coo_array A.row writeable flag to false (#19940)

15b4d781a090d7a57a7be9c91038aea0fc86a345 authored 12 months ago
Update requirements.txt too

2dbeb80d9e11dd3978b6a51925915bbb0b8fadf1 authored 12 months ago
hypothesis: document minimum required version

ba6ca7345ccf05feeab95c74c3670fd5765735e0 authored 12 months ago
Merge pull request #19927 from lucascolley/kmeans-int

BUG: cluster.kmeans*: array types: accept `int`s for k

c2ec6acd337f8138172b3c466cb71a8f2a59620c authored 12 months ago
Merge pull request #19938 from lucascolley/xp-dtype

MAINT: special: array types: fix warning when not in array API mode

365e0251d6ad3603334e5fcc16a327de0a07d915 authored 12 months ago
BUG:special:amos: Fix exit path in `amos_asyi` (#19939)

* BUG:special:amos: Add missing return branch

abc7c9e4f1a3e4fc42a5762de2d4ef7ef2fc6226 authored 12 months ago
TST: Add RNG seeds for TestInvgauss and TestLaplace (#19937)

60670da56eefb2d7c6d9e610b87bb08e88d9bd7a authored 12 months ago
MAINT: special: array types: fix warning when not in array API mode

[skip circle]

8d5cbaaf80ff03050241cc1d76602aff046294b3 authored 12 months ago
BUG:special:amos: Fix some mistakes in the AMOS C translation (#19934)

* BUG:special:amos:Fix missing return branch for amos_kscl

ref: amos fortran code: https://g...

d154b59f754b5e94ec588ca7f3cf490790760850 authored 12 months ago
Merge pull request #19885 from rgommers/fix-arrayapi-issues

MAINT: fix some small array API support issues

217376f374266d674549417a3f0d7576c05eac55 authored 12 months ago
MAINT: update array-api-compat to version 1.4.1

This version has support for NumPy 2.0

6d97e4620fc303bbbbdab4b7cca06e82147405e5 authored 12 months ago
BUG: Correct handling of -inf in special stdtr funcs (#19933)

Ensure that -inf returns nan rather than the value from a normal

a160e856a3f7684402ae0f4b9463417f75741e56 authored 12 months ago
Merge pull request #19917 from ev-br/fitpack_fpchec

MAINT: replicate FITPACK's `fpchec` routine in python

44b39e1e740795aa8cd4d69e88d6c0acb116eeac authored 12 months ago
STY: remove duplicate line

[skip ci]

1485b4d4e1c53da924cbcfaf5bda5a366badc34e authored 12 months ago
TST: interpolate: add reviewer requested tests

02c16ceec7d694461a85699967ea07d57ead85c0 authored almost 1 year ago
MAINT: interpolate/fpchec: apply suggestions from code review

Co-authored-by: Jake Bowhay <[email protected]>

7e0f6f2f09b169bba30d3ce5f5bdfb0983c4daeb authored almost 1 year ago
MAINT:special:cdflib:Refine the tolerances further (#19931)

An improvement over gh-8404

cbc8a586edb7034663930ac57623566eaf6b07aa authored almost 1 year ago
Merge pull request #19925 from tylerjereddy/treddy_forward_1_12_0_notes

ecda31227b9fcd5a00e12a1c23ede0aeb217c510 authored almost 1 year ago
BUG: cluster.kmeans*: array types: accept `int`s for k

[skip circle]

1ba322320e4eaab3d9551ff435a8782868d9f548 authored almost 1 year ago
TST: cluster: array types: remove `kmeans*` scalar k skip

b606d48132c4aadae05a34e19c14282598569826 authored almost 1 year ago
MAINT: forward port 1.12.0 relnotes

* forward port SciPy `1.12.0` release notes following
the "final" release this afternoon, and ad...

fb21fa0824a7f0ca73821bfdea8103e0324ba8eb authored almost 1 year ago
TET: cluster: fix test_kmeans_and_kmeans2_random_seed (#19924)

e108934e25c61c6dc074fc20256236d03d22fa9d authored almost 1 year ago
Merge pull request #19744 from mdhaber/gh19692

ENH: stats.mannwhitneyu: speed improvement, memory reduction, and `PermutationMethod` support

96c3d5714b23cc4b51e2166c6f1591fb66dea9f4 authored about 1 year ago
Revert "ENH: stats.wasserstein_distance: multivariate Wasserstein distance/EMD (#17473)" (#19881)

This reverts commit 28eecdb22ec5e3e621dd515bccc158f2f7b25b4c.

b882f1b7ebe55e534f29a8d68a54e4ecd30aeb1a authored about 1 year ago
Merge pull request #19689 from mdhaber/moment_order

MAINT: stats.moment: rename parameter `moment` to `order`

647d1cbd95d0407c7c0010e483c89ab77add76b4 authored about 1 year ago
ENH:special:Tighten cdflib precision to 1e-15 (#8404)

2909d0a0d34f07b3d7885b36739d95caf0f2cac0 authored about 1 year ago
BUG:special:cdflib: Correct cdftnc Cython bugs (#19902)

* BUG:special:cdflib: Correct cdftnc Cython bugs

[skip cirrus] [skip circle]

* BUG:special...

0967b0e5fe28694b9c387bad56dfb02c937baedc authored about 1 year ago
MAINT: interpolate: add _bsplines.fpcheck to mirror dfitpack.fpchec

ea09b01bd6b632fa43b6639fe49a25053c87f669 authored about 1 year ago
MAINT: update pocketfft git submodule location (#19916)

Point it at our own fork, for future-proofing. That fork will be
a mirror of the upstream repo....

f04fd02dd68b48a0315524022af7a1187dec7fbe authored about 1 year ago
MAINT: interpolate: make fpchec error codes more granular

a6284f6cf7ac40865dc9810ea840f7b0164052e8 authored about 1 year ago
Merge pull request #19910 from rgommers/fix-install-project-name

BLD: ensure the name of the installed `scipy` package is lower-case

07c30f1f169174fb56964c374af53232d1139a6d authored about 1 year ago
BLD: ensure the name of the installed `scipy` package is lower-case

Closes gh-19906

[skip cirrus] [skip circle]

c37679702b85eb7c75dec6f7b1705fc4f55fd30c authored about 1 year ago
Merge pull request #19909 from ilayn/evr_liwork

MAINT:linalg:Adjust lwork/liwork changes OpenBLAS 0.3.26

0a7631f00e4d9f61b12fd478916be830d7a627a5 authored about 1 year ago
Merge pull request #19908 from KamathForAIX/gh_19895

MAINT:special:Rename variable hz to half_z for AIX builds

e05a44f18a171c7702cc9a5dc9a96c6cd336d8b2 authored about 1 year ago