github.com/OpenMS/THIRDPARTY commits | Ecosyste.ms: OpenCollective

[ADD] Add Trap to sirius script to kill child processes

d569101feef1c6c5884225bac09570f3f6f32d48 authored over 7 years ago by lukas <[email protected]>

Merge pull request #28 from lukaszimmermann/fix/percolator_macos64

[UPDATE] Update Percolator executable to the most recent release for …

1d2d7b5d9d163520a2aeb0fad4b011b6dec4d7ca authored over 7 years ago by jpfeuffer <[email protected]>

[UPDATE] Update Percolator executable to the most recent release for MacOS 64bit

bc3dfb1044521a38b1e7bb2f398c511cc4fc6dbb authored over 7 years ago by lukaszimmermann <[email protected]>

Merge pull request #27 from jpfeuffer/fix/SiriusGLPKRPATH

Added ORIGIN to RPATH of Sirius glpk-libs for dpkg-shlibdeps

fa6e77e9e1fa72cdd48c0a9b8bded5a0c23cb23e authored over 7 years ago by jpfeuffer <[email protected]>

Added ORIGIN to RPATH of Sirius glpk-libs for dpkg-shlibdeps

45741711f110f9bd0d116acab8eabc306fb87bf4 authored over 7 years ago by Julianus Pfeuffer <[email protected]>

Merge pull request #25 from FabianAicheler/feature/pwiz64_3.0.11252

Feature/pwiz64 3.0.11252

95ad06e0940c6272e71b39b91ab3ea6be867497e authored over 7 years ago by Timo Sachsenberg <[email protected]>

added 3.0.11252

59438d9aed4ccc2ed219b97b51ccfc60b61d697c authored over 7 years ago by Fabian Aicheler <[email protected]>

deleted old

9283fba3f7178daafe328a7035f0861a8a433490 authored over 7 years ago by Fabian Aicheler <[email protected]>

Merge pull request #22 from oliveralka/update/sirius_3.5.1

[UPDATE] Update Sirius/CSI:FingerID to Version 3.5.1

09a0a83bb8846d60577c16c0f9040dd195ff4188 authored over 7 years ago by Timo Sachsenberg <[email protected]>

Merge pull request #23 from lukaszimmermann/release_2_3

[Release_2_3] Prepare THIRDPARTY for OpenMS release 2.3

87f9b7f86724d5a85fcb7e0b196c79b7975111fd authored over 7 years ago by Timo Sachsenberg <[email protected]>

[Update] Update spectrast executable for MacOS

c86d5f7ccaf38176fba499dbd9f0a70239cdb776 authored over 7 years ago by lukas <[email protected]>

[FIX] Replace percolator installer executable by percolator executable

c83a58c2a234805e333761876ff40a01bc8152e4 authored over 7 years ago by Lukas Zimmermann <[email protected]>

[UPDATE] Link spectrast statically and update corresponding README

ace2146abbdb35a9ad26ee681d6a8c24598a7156 authored over 7 years ago by lukas <[email protected]>

[RELEASE_2_3] Percolator Linux 64bit is now latest release and no longer build from the nightlies

5af2346617014e217cb31b852d5e20768af4db10 authored over 7 years ago by lukas <[email protected]>

[UPDATE] Update MSGFPlus.jar to release (v2017.07.21)

428cb18de0552d169c14c5476aca6e886a29041f authored over 7 years ago by lukas <[email protected]>

[UPDATE] Update Sirius/CSI:FingerID to Version 3.5.1

4a92ce9d256a58735a7100a816e200a2adad1e4a authored over 7 years ago by Oliver Alka <[email protected]>

remove sirius test

575a7c4facf361552698e1ebbf53a203a8036490 authored over 7 years ago by oliveralka <[email protected]>

remove test

0ced1c5ecf4b6262cdf0abcc48bb9f141325e1e5 authored over 7 years ago by oliveralka <[email protected]>

[FIX] fix bash sirius linux format

a8899345467f8273441e11aa8ec8aab5d2f62863 authored over 7 years ago by oliveralka <[email protected]>

Merge pull request #21 from oliveralka/master

[FIX] Classpath SiriusAdapter

0c3403e51c54eca33bc96cb668985720a2592f1e authored over 7 years ago by Timo Sachsenberg <[email protected]>

Merge branch 'master' of https://github.com/oliveralka/THIRDPARTY

8b749e748a131a11cdae7cd9c9719306c4ffadb0 authored over 7 years ago by Oliver Alka <[email protected]>

[FIX] APP_HOME initiated via realpath

6428496c803c03acb76d0b41c7509751cae9a8d3 authored over 7 years ago by Oliver Alka <[email protected]>

Merge pull request #20 from oliveralka/master

[FIX] classpath Sirius executable linux/mac

e8d8d47a0827ef481e9a263da2fa7744682fdd6b authored over 7 years ago by oliveralka <[email protected]>

remove merge artefact

3fbd8e221b2ef2be86081f2803ca9a0573838d32 authored over 7 years ago by oliveralka <[email protected]>

remove merge artefact

2151b140658ad7428acde8b38e0111b132e08152 authored over 7 years ago by oliveralka <[email protected]>

[FIX] Use flat folder structure and/or relative path

94fc5b260b98906863d0be3e3dedf26a1f115c84 authored over 7 years ago by Oliver Alka <[email protected]>

Merge branch 'master' of https://github.com/OpenMS/THIRDPARTY

ae3d7e313059937c78b9099c6c4b2d67db797b2f authored over 7 years ago by Oliver Alka <[email protected]>

[FIX] classpath Sirius executable linux/mac

2964582f145c6aea0b77bbdb455e7e326355d2af authored over 7 years ago by Oliver Alka <[email protected]>

Merge pull request #18 from OpenMS/fix/siriusLibPathLnx

[FIX] Correctly set library path for Sirius on Lnx

bcd34ec2cfcc7e6a818a084000fb8c67f3c0c789 authored over 7 years ago by Lukas Zimmermann <[email protected]>

Added a portable realpath function

b21a781cc7ade33f944122a50eb51e0e2e9f3931 authored over 7 years ago by jpfeuffer <[email protected]>

Added a portable realpath function

6e2d19043dd1b3cb6d7aa2f731cfc0a93e718c71 authored over 7 years ago by jpfeuffer <[email protected]>

Also allow old behaviour (mac)

d671d0e81910d40ba068eb9b50e2fd9f0e2779a3 authored over 7 years ago by jpfeuffer <[email protected]>

Also allow old behaviour (lnx)

c0ce3d7937f9f24af2e4e03cbdb7223677394939 authored over 7 years ago by jpfeuffer <[email protected]>

Used LIB_DIR variable for Sirius also on Mac

11673a7934eb8ea42f1a5d1699b63bd93242bb1c authored over 7 years ago by jpfeuffer <[email protected]>

[FIX] Correctly set library path for Sirius on Lnx

9122977b452e8993c42a25c02d2638b0e869d495 authored over 7 years ago by jpfeuffer <[email protected]>

Merge pull request #17 from jpfeuffer/fix/debPackagingRPATHSirius

Added ORIGIN to RPATH of Sirius libs on lnx.

abe07acf802b3301a47dab763ae1c299a902b2a9 authored over 7 years ago by jpfeuffer <[email protected]>

Added ORIGIN to RPATH of Sirius libs on lnx.

e3b2bfb514340d00d71fd1cdf054bf1a175130de authored over 7 years ago by Julianus Pfeuffer <[email protected]>

Merge pull request #16 from OpenMS/fix/siriuslibpath

Fix/siriuslibpath

f4eacf6a7ceac3beccdf468797b29d5f1111aeb0 authored over 7 years ago by jpfeuffer <[email protected]>

[FIX] Newline at the end of line of sirius startup scripts

333ccdf69abd6a80c67152ebcf2b0ed50ab15a01 authored over 7 years ago by lukas <[email protected]>

[FIX] Change way to determine lib dir for CLASSPATH in sirius script

ee2bca5dfe30b40ccb85f91673de78c4b5bcdf12 authored over 7 years ago by lukas <[email protected]>

Merge pull request #15 from lukaszimmermann/percolator/static

Change Percolator executable 64bit to statically linked version

02081f536d11997f626aec7a97bec59cabaad188 authored over 7 years ago by jpfeuffer <[email protected]>

Change Percolator executable to statically linked version

built from commit 76c5ab1aba0bb7916c90283da1dd5c46032c08d9

f1a93319f2365d5c8da5ca1cf7a262d8718c583d authored over 7 years ago by lukas <[email protected]>

Merge pull request #14 from oliveralka/master

[ADD] Sirius3.5 (linux, osx, win)

b2b4575029441b457061ef4f4b7e1930e9ae48de authored over 7 years ago by jpfeuffer <[email protected]>

[ADD] Del old structure; add new structure with one lib (all) and diff executable

47751da19557cc7fb1210f3c5521191a6dd09809 authored over 7 years ago by Oliver Alka <[email protected]>

[ADD] Sirius3.5 (linux, osx, win)

5339015caf375ad2bcddce30df0e8b0e63e0f196 authored over 7 years ago by Oliver Alka <[email protected]>

Merge pull request #7 from lukaszimmermann/master

[ADD] SpectraST executable from TPP and README

adef895946db8e7444872eecbbdc8b812a3f4525 authored over 7 years ago by Timo Sachsenberg <[email protected]>

[SPECTRAST,ADD] Add spectrast.exe for Win64

a72f0ec5bf6fb3ca2fcc6d342b461b5dadbceda8 authored over 7 years ago by lukas <[email protected]>

[SPECTRAST,ADD] Add binary for spectrast MacOS 64bit

95535716f9f38bc9bdb1364d3444125d1d2abdcd authored over 7 years ago by lukas <[email protected]>

[SPECTRAST] Update spectrast binary

87b1de1381b34603dcb9e3cf4535fb4daa12c189 authored over 7 years ago by lukas <[email protected]>

Merge branch 'master' of https://github.com/OpenMS/THIRDPARTY

05880eabf52bbe20960d639bbc414457bfe5b3f3 authored over 7 years ago by lukas <[email protected]>

Merge pull request #12 from jpfeuffer/feature/percolator

[Feature] Percolator

c948abbf867e3806ae9b6f478d0813e82a0c0940 authored over 7 years ago by Timo Sachsenberg <[email protected]>

Added version information

1fe509e875f30bd8b73fb6c80aeaac751eb530f6 authored over 7 years ago by Julianus Pfeuffer <[email protected]>

Added percolator 3.01 executables

150b7d230d8782a7a7bfab6d93ae5fb310f06969 authored over 7 years ago by Julianus Pfeuffer <[email protected]>

Merge pull request #11 from jpfeuffer/macos/comet

Added macOS binary for Comet

01bbebe9c1560936aa92ec32c5b3b05370e3ef7b authored over 7 years ago by Hannes Roest <[email protected]>

Used dowloadable binaries for Windows and Linux64

de698a9d98e2164e0cf074e0b63c892cdb89cc73 authored over 7 years ago by Julianus Pfeuffer <[email protected]>

Added Linux64 version of comet

a3052b4f7c0724218371e1bca518348fbd309af4 authored over 7 years ago by jpfeuffer <[email protected]>

Added/modified readmes

d45ac262577c280ad6d80bb6944e9f77ab4815a6 authored over 7 years ago by Julianus Pfeuffer <[email protected]>

Updated to version 2016013

1531956cfff2ac4cfbbc04ae5f20bfefeadbaf20 authored over 7 years ago by Julianus Pfeuffer <[email protected]>

Added macOS binary for Comet

6abc9986c07bc18e559471adb21fe17eb666864b authored over 7 years ago by Julianus Pfeuffer <[email protected]>

Merge pull request #9 from jpfeuffer/master

[FEATURE] Added redists for pwiz here.

ee44455b10fc64903b03d397be259a533094dacb authored over 7 years ago by jpfeuffer <[email protected]>

Added redists for pwiz here.

f8e14eef23b0946de79456e4f2c174d38e49b3cc authored over 7 years ago by Julianus Pfeuffer <[email protected]>

[UPDATE] Update LuciPhor2

7736f2e565fce96f168f57ae7de94b8440d914ec authored over 7 years ago by Oliver Alka <[email protected]>

Merge pull request #8 from jpfeuffer/master

Updated MSGFPlus version to v2017.01.13

751bb4e0325b398c46d91a61e805485c3a4ae206 authored almost 8 years ago by jpfeuffer <[email protected]>

Updated MSGFPlus version to v2017.01.13

8bf84d5ecb9521f940d25f2866fa6c1baf8b800a authored almost 8 years ago by Julianus Pfeuffer <[email protected]>

[ADD] SpectraST executable from TPP and README

README contains description of the compilation

a70f76c63cbb99c73861e56ac4af4ee9a3d14743 authored almost 8 years ago by lukas <[email protected]>

Merge pull request #5 from FabianAicheler/FabianAicheler-tandem32

changed 32bit tandem to old, working version Sledgehammer

d11b2b62c9702b18c800a89d50d620ad30953dbe authored about 8 years ago by Timo Sachsenberg <[email protected]>

changed 32bit tandem to old, working version Sledgehammer(i.e. latest 32bit)

204bed76ea0e07829971c0347c8989847ec25b61 authored about 8 years ago by FabianAicheler <[email protected]>

[FIX] update MSGFPlus v2016.10.14, released October 14, 2016

461bf2b026649feab9ca569bc9968038eaedefca authored about 8 years ago by Timo Sachsenberg <[email protected]>

updated MSGFPlus version to

Version:
v2016.10.10, released October 10, 2016

7f04f3540687a6591d460593179034d002e20536 authored about 8 years ago by Timo Sachsenberg <[email protected]>

update to MS-GF+ Release (v2016.09.07) (9/07/2016)

5bf91cddf0e1847bf2870c3901aa3c3c77504ef5 authored over 8 years ago by timosachsenberg <[email protected]>

Merge pull request #4 from jpfeuffer/fidoLinux

Added a fallback Fido executable from Ubuntu14.04

d29e379c9c11412633f3103a91c65979717a863c authored over 8 years ago by Timo Sachsenberg <[email protected]>

Added a fallback Fido executable from Ubuntu14.04

0aa21bbf445dda33d26eaac7a84409bce01c9442 authored over 8 years ago by Julianus Pfeuffer <[email protected]>

added pwiz 32bit and 64 bit version 3.0.9935 from (8.8.2016)

21a085a5d8cc16972a3bb5b2540348fb47c8830e authored over 8 years ago by Timo Sachsenberg <[email protected]>

updated xtandem to Latest release: VENGEANCE (2015.12.15)

This release improves the precision of handling variable modifications. Several new commands and ...

137506229e1727fe563be8d6b12f9d289238d497 authored over 8 years ago by Timo Sachsenberg <[email protected]>

Updated MSGFPlus to version 20160629

96b7bcb17fcb9d8f9486168ffc99b484ca304e36 authored over 8 years ago by Timo Sachsenberg <[email protected]>

Merge pull request #1 from PetraGutenbrunner/luciphor2

[FEATURE] LuciPHOr2 package for new TOPP tool LuciphorAdapter

1463360980eba99e1cebbe31dca15853f8337c9a authored almost 9 years ago by Timo Sachsenberg <[email protected]>

[FEATURE] LuciPHOr2 package for new TOPP tool LuciphorAdapter

new file: All/LuciPHOr2/LICENSE.txt
new file: All/LuciPHOr2/README.txt
new file: All/LuciP...

e4424deee3621acb4a5b668ba0d00292bb8660e9 authored almost 9 years ago by Petra Gutenbrunner <[email protected]>

Migration of svn third party binaries to github

e5f745d786a6dcec413d0453f2141bf94e8db17e authored almost 9 years ago by timosachsenberg <[email protected]>

Initial commit

5a93db839b28cc0371e5e8e8cb39f287d9b1c533 authored almost 9 years ago by Timo Sachsenberg <[email protected]>