Ecosyste.ms: OpenCollective

An open API service for software projects hosted on Open Collective.

WESTPA

Highly scalable software for running extended-timescale simulations with any dynamics engine
Collective - Host: opensource - https://opencollective.com/westpa - Website: https://westpa.github.io/westpa/ - Code: https://github.com/westpa/westpa

Merge branch 'amber_nacl_fix' into master

Former-commit-id: e9d08dd3aa103a78f7ce3919a985897d570fb7ec

github.com/westpa/westpa - bdc0c4d1f864c4245f6bc9135eed9ea228963f0d authored over 7 years ago by ajd98 <[email protected]>
Fixed formatting issue

Former-commit-id: 950c2d0c891518176e83589ab7fbcf74fb1385b8

github.com/westpa/westpa - 760acc94ad046299dcfec623226fe5af608adb0e authored over 7 years ago by Alex DeGrave <[email protected]>
Updated the Amber Na+/CL- tutorial to be consistent with Adam's change in the env.sh

Former-commit-id: 040bfc118a06de7f32341fe5b1f5f701de2e92cf

github.com/westpa/westpa - fa0eb0c245838e90b767af4e4fc87dd8d1471ffd authored over 7 years ago by Alex DeGrave <[email protected]>
Removed changes related to split/merge driver changes.

Former-commit-id: c34f3bc5297118fc1aa3ce744c8c087da04ea808

github.com/westpa/westpa - d5b57ca0a2ba9d3aa2ffbd58d0efb3f93bb90dfd authored over 7 years ago by Adam Pratt <[email protected]>
Fixed merge results.

Former-commit-id: d623e1b083830226cf093b4764a7aa6786c5ea51

github.com/westpa/westpa - 213ab9fb63c7b25f9c26a66f52a6dfae95af9ab1 authored over 7 years ago by Adam Pratt <[email protected]>
Manual merge, resolved changes, fixed west bin

Former-commit-id: 4c2d07923146e2c3a6b525f845d21f58ddb03e05

github.com/westpa/westpa - 7f4270b249df5e55ad00eeeb95ec3d76f7881565 authored over 7 years ago by Adam Pratt <[email protected]>
More minor changes to help with merging.

Former-commit-id: 37b082cb10b1f28787751f666c43b3ed32bf0045

github.com/westpa/westpa - 97099bf34480ffa7dcf81c98aa8a9327e0f041cd authored over 7 years ago by Adam Pratt <[email protected]>
Minor changes to help with merging.

Former-commit-id: 8c7e7fb73430fb1570dad1465e20ff3321ac7b2c

github.com/westpa/westpa - 19e2a13a62aeec9b9d7cbf2f22fc623ec24df21d authored over 7 years ago by Adam Pratt <[email protected]>
Fixed ODLD example.

Former-commit-id: fa56f271a5c6f3e727da7972db2b414dff4ad26b

github.com/westpa/westpa - 35b486ec9d19f343908c160fab0577b3a6279c9f authored over 7 years ago by Adam Pratt <[email protected]>
Added in min/max weight shortcuts, improved handling of return dictionaries.

Former-commit-id: 55a64cb65be17f96f289563b3802197821bf8146

github.com/westpa/westpa - 1fe478ecf17a779afec5ef737c62af3f7ea148af authored over 7 years ago by Adam Pratt <[email protected]>
Fixed issue w/ closing the work manager, included parents in w.current return dictionary (when indexed via seg_id)

Former-commit-id: 1794e37bf296dd9a3f7527c8d298a4106c2e5033

github.com/westpa/westpa - d26250baa6c28fbecac2dbf7d1e2142b06e1ff0c authored over 7 years ago by Adam Pratt <[email protected]>
Adjusted parameters for analysis. Section in west.cfg now renamed analysis.

Former-commit-id: 710a8f56f9767be072b6c86d0af7ffccb83241bb

github.com/westpa/westpa - 1a140c718582eb9f5199e582762ed6717c7f2a38 authored over 7 years ago by Adam Pratt <[email protected]>
Fixed switching of current/past/future objects when changing schemes, ticked version to beta.

Former-commit-id: ea9de6eeae2208e40f90fdaf87e4c5218d6fca78

github.com/westpa/westpa - 5bf3be36435ca0eceafd4555002a8948fb66fd9f authored over 7 years ago by Adam Pratt <[email protected]>
Changes to the west binary for easily calling jupyter notebook.

Former-commit-id: 4af4dd46156ec9ab013fc9c9658ff56ef2d051c3

github.com/westpa/westpa - 2d4ad727a458e46f2fd613a706ae8e7de70dfa4a authored over 7 years ago by Adam Pratt <[email protected]>
Updated and added a lot of docstrings.

Former-commit-id: 9d24ab9f5f2f56d485eea9caef5fd28da56f1849

github.com/westpa/westpa - 0230f69a68b7a7ea0f1e1875ce07bfbfe7aa8cc8 authored over 7 years ago by Adam Pratt <[email protected]>
w_ipython now hooks into w_direct and w_reweight far more intelligently, and makes good use of the argparsers.

Former-commit-id: fe254befff788f6726871afd955ef97c16037021

github.com/westpa/westpa - e0db7cd6fbb5c06dc3dd69a5b5b6f54300fbd537 authored over 7 years ago by Adam Pratt <[email protected]>
Renamed w_ipython to w_ipa

Former-commit-id: 1a118fd2e2dcc63417f0c473a72e00d97bf29ee3

github.com/westpa/westpa - 0e7b7bf2239c6d12a5c56caae80d687efdaa0b56 authored over 7 years ago by Adam Pratt <[email protected]>
Commit from last night.

Former-commit-id: 3f4f3720f1074ccc2f6b6e2547d82cf30c3bfef7

github.com/westpa/westpa - 07b8ec4941166d230c170bfdbc008cde03263c24 authored over 7 years ago by Adam Pratt <[email protected]>
Modified w_ipython to work with w_direct.

Former-commit-id: 353fe2e42c7aa8a38530f6df531e6b59b16a48dc

github.com/westpa/westpa - 594d4fff20913aa0d4da86c9d5dcd26fad3a0b8d authored over 7 years ago by Adam Pratt <[email protected]>
Moved plotting interface to its own file. Later, perhaps ploterr can be used to plot results this way, if a PDF isn't required (or possible to build).

Former-commit-id: 527aa6e163ca0807683244d3198f575c4b75edfe

github.com/westpa/westpa - aa6cde79533930cd2390277577aef7aaa4049930 authored over 7 years ago by Adam Pratt <[email protected]>
Adjusted west script. w_env now handles environment variable setting, west sources and is responsible for launching scripts, and w_jupyter launches a jupyter notebook session that has the west environment variable setting already handled.

Former-commit-id: 000a4cfbbcb9741fade0500dc48b7348739c73f0

github.com/westpa/westpa - 7e70fab666bfaeedfb4615ef22f6ec3f67067c3e authored over 7 years ago by Adam Pratt <[email protected]>
More fixes and cleanup. More robust calling of plotting and handling of iteration setting.

Former-commit-id: 7d9b29ddf6fcab4439713c79c6dd0155de225916

github.com/westpa/westpa - e893e88269a9e4704560f6ae0732182e3976872b authored over 7 years ago by Adam Pratt <[email protected]>
Fixed auxdata error.

Former-commit-id: eb55e342b589a6f0d291edae6006742d0212b76b

github.com/westpa/westpa - 1d94908588429921013beedb9203dad8706d843d authored over 7 years ago by Adam Pratt <[email protected]>
Trace support fixed.

Former-commit-id: d06bf84e4605eba5d3a8babfb3fc09c73e07dc98

github.com/westpa/westpa - d84ef691a942e6b961415d8903adac1efbeed9cd authored over 7 years ago by Adam Pratt <[email protected]>
Support for blocked datasets, no tool output display, and extra arguments in place. Current/past/future dictionaries also support indexing via seg_id, then dataset, as well.

Former-commit-id: 75f921802cde32bdd769b799eeaba7f124a94904

github.com/westpa/westpa - 55feb83fc76ed4140fe911b62e798964fff8c559 authored over 7 years ago by Adam Pratt <[email protected]>
Fixed up w_assign portion of the code. Now calls w_assign function for construction of bin mappers and state assignment instead of replicating functionality, which was much more likely to break.

Former-commit-id: 495def86303c6d99becc6e52a75760ed3cc8dc3d

github.com/westpa/westpa - f69bc08afd08042a65fbfa5461b0557d106d0e7b authored over 7 years ago by Adam Pratt <[email protected]>
New 'current' and 'past' objects should not be created everytime the property is called.

Former-commit-id: 83f33bbe7cba5035739c0479ba31e84db4055c09

github.com/westpa/westpa - b94daebee0f0274d55fb1ef5dbc226ea349e6e89 authored over 7 years ago by Adam Pratt <[email protected]>
More minor changes to help with merging.

Former-commit-id: a5f8cfb7fb70a50187c49fdb9e9a2a5767df8bee

github.com/westpa/westpa - 2f7beb17fa82afb6b324cfef79b22149702a6ea4 authored over 7 years ago by Adam Pratt <[email protected]>
Minor changes to help with merging.

Former-commit-id: 323e7266064c3cebacb331db32c9eeb0a78606ef

github.com/westpa/westpa - 9d86c08eb1c537e565fc9624d8429999c4024892 authored over 7 years ago by Adam Pratt <[email protected]>
Purged of references to multitools and w_ipython stuff.

Former-commit-id: 1577803332287998b4bb7c4365a3bd565ad1fd80

github.com/westpa/westpa - 31842533e92754cfe33fce46e27ec5c85a3e0b25 authored over 7 years ago by Adam Pratt <[email protected]>
Removed w_postanalysis_matrix.

Former-commit-id: ca5b0b07d0bacf0819b8edd45db84d8c5592865b

github.com/westpa/westpa - 8a0d373899392953251a99f20307b1e5fcb2129f authored over 7 years ago by Adam Pratt <[email protected]>
Reverted w_assign to old form: no subsampling, no config from west.cfg.

Former-commit-id: 6ca9095f6442f6f521ca9cf3c8605a07fe92e96a

github.com/westpa/westpa - e366f7c16ebec5753324542345a0d0f783791113 authored over 7 years ago by Adam Pratt <[email protected]>
Removed all old references to old w_ipython

Former-commit-id: 9dc1080a9035c8c5e26afadbd28fa39d45d0e323

github.com/westpa/westpa - beb7d8298e011b495464286517d02d7d4a0926c7 authored over 7 years ago by Adam Pratt <[email protected]>
Fixed w_fluxanl, removed references to pre_calc.

Former-commit-id: e66b343f9444b7502c85be532362c61b8bdddba1

github.com/westpa/westpa - 10a23e4146e708a00abd3637496588a6cdaa1aef authored over 7 years ago by Adam Pratt <[email protected]>
Changes to the west binary for easily calling jupyter notebook.

Former-commit-id: 26e42af8188953ca5116802bc36d951262cef834

github.com/westpa/westpa - 6ce11fb582d0152b20b0fbd3bddc6a21110441f4 authored over 7 years ago by Adam Pratt <[email protected]>
Updated and added a lot of docstrings.

Former-commit-id: 911c87bb9768ca4e00be0ab556c0ade340118827

github.com/westpa/westpa - 278cb80366cbf83ec36893b46cf25c73283565cc authored over 7 years ago by Adam Pratt <[email protected]>
Fixed ODLD example.

Former-commit-id: 3e0830dd02629be3da446e6139bc0fb3d76995aa

github.com/westpa/westpa - 2dba681670a58ff2d10993f208e0a6f2d771f71f authored over 7 years ago by Adam Pratt <[email protected]>
Fixed switching of current/past/future objects when changing schemes, ticked version to beta.

Former-commit-id: de3783d00285d0771afae736353e0d35fb7ec47e

github.com/westpa/westpa - 696385692012435288ccda78f5b119e4e85ca72a authored over 7 years ago by Adam Pratt <[email protected]>
Added in min/max weight shortcuts, improved handling of return dictionaries.

Former-commit-id: a92eb771059f5f7e85a901c020c5b597f380c013

github.com/westpa/westpa - eace6f8a87d2526d6ae7310a3a198afcfad39e83 authored over 7 years ago by Adam Pratt <[email protected]>
Fixed issue w/ closing the work manager, included parents in w.current return dictionary (when indexed via seg_id)

Former-commit-id: 7d482dc025b24cbf3851296a584134b2049253e4

github.com/westpa/westpa - 7967e850f885fe442addd07863b824f5170b42ad authored over 7 years ago by Adam Pratt <[email protected]>
Adjusted parameters for analysis. Section in west.cfg now renamed analysis.

Former-commit-id: 37d6b1d6f73206111f1b1a952b6a54612ea860d0

github.com/westpa/westpa - 26932214b75f1332282379d1977478e36203c458 authored over 7 years ago by Adam Pratt <[email protected]>
Renamed w_ipython to w_ipa

Former-commit-id: 20239e6a6028e52d0b79f51b95891993ce393280

github.com/westpa/westpa - be9fe2bc0346ef635f0af47fbbb2a3456df2a8df authored over 7 years ago by Adam Pratt <[email protected]>
Adjusted west script. w_env now handles environment variable setting, west sources and is responsible for launching scripts, and w_jupyter launches a jupyter notebook session that has the west environment variable setting already handled.

Former-commit-id: 2e6e2f0e4239ff0c0007a4ac776b1aae95166124

github.com/westpa/westpa - b120345c67be1814e84fa8b412170fb1355e674c authored over 7 years ago by Adam Pratt <[email protected]>
Added overview pdf and link to the rst

Former-commit-id: ee9d9883dbec6b96e539341f0a9ed2112f9c87dc

github.com/westpa/westpa - 4329bd49648020db2cf6d4ff39a6491c8269bb7d authored over 7 years ago by ASinanSaglam <[email protected]>
More fixes and cleanup. More robust calling of plotting and handling of iteration setting.

Former-commit-id: 9973588a5f42d5bf602b84ccc791b719e1155018

github.com/westpa/westpa - f390837a77e539331a2d0d3a4fd4684d2e47cd3f authored over 7 years ago by Adam Pratt <[email protected]>
Updated make file test

Former-commit-id: 345c103457b152e48dfee449ba10bb727ca595fe

github.com/westpa/westpa - a24ee769520e8d19cb0ab44403f9f10fd288e07e authored over 7 years ago by ASinanSaglam <[email protected]>
Fixed up w_assign portion of the code. Now calls w_assign function for construction of bin mappers and state assignment instead of replicating functionality, which was much more likely to break.

Former-commit-id: d78a22761973a5edd70a869ed47262a698161aa5

github.com/westpa/westpa - 1e2d8d82859de0373a8275039ed10075009d8bdb authored over 7 years ago by Adam Pratt <[email protected]>
New 'current' and 'past' objects should not be created everytime the property is called.

Former-commit-id: 0d5a292c580273143ef6b5099804cefab2d73c69

github.com/westpa/westpa - 0eaaddc09f877536db2a978309acc6a1d1d25288 authored over 7 years ago by Adam Pratt <[email protected]>
Moved plotting interface to its own file. Later, perhaps ploterr can be used to plot results this way, if a PDF isn't required (or possible to build).

Former-commit-id: a3090ecd2bab8561e512ed80c11de0916f95e7ea

github.com/westpa/westpa - e653308e0f40ea234452224e1ff564f9a5472204 authored over 7 years ago by Adam Pratt <[email protected]>
Commit from last night.

Former-commit-id: fbd09c7c8edf24a22efffaefcc97b218be3e807b

github.com/westpa/westpa - 5285327a9677f42ef1cab2e7c4aab36c2925a25a authored over 7 years ago by Adam Pratt <[email protected]>
Set it to fail out if AMBERHOME doesn't exist.

Former-commit-id: 85ae1f0bcf6862c9092fcdd53b042024f28b99b5

github.com/westpa/westpa - bd07ea14cfdf714f52e67743f1ea4c25f6071d65 authored over 7 years ago by Adam Pratt <[email protected]>
User must have AMBERHOME set. Fixed env.sh to reflect this.

Former-commit-id: 5c47d4b726b448133d6e7e4f9d1084528a27b190

github.com/westpa/westpa - c88b084fa3f413edb760c3ce615fdb7a63d14491 authored over 7 years ago by Adam Pratt <[email protected]>
Fixed auxdata error.

Former-commit-id: 46840441f77f16080c20937ddee6c1cc7e1504e0

github.com/westpa/westpa - ce3f60dcca371a80029e25fd8f3dc2a12b70460a authored over 7 years ago by Adam Pratt <[email protected]>
Trace support fixed.

Former-commit-id: c27a50c911770bb16c7e56da2dee23c94c0f4e11

github.com/westpa/westpa - b4fcf0493bdd835db73eafb19db89c34371afdbd authored over 7 years ago by Adam Pratt <[email protected]>
Support for blocked datasets, no tool output display, and extra arguments in place. Current/past/future dictionaries also support indexing via seg_id, then dataset, as well.

Former-commit-id: b758f5bdef908e1b52a34c2dcd6e342a1f39915b

github.com/westpa/westpa - 3d3825b72c1f7285677fa199da472240154510e9 authored over 7 years ago by Adam Pratt <[email protected]>
w_ipython now hooks into w_direct and w_reweight far more intelligently, and makes good use of the argparsers.

Former-commit-id: 0d5c5f6aaf406d9649e0f4a28845e1c280235f6c

github.com/westpa/westpa - 094d95645aaf90c2c6eb827cb04580b6a096ae0f authored over 7 years ago by Adam Pratt <[email protected]>
Modified w_ipython to work with w_direct.

Former-commit-id: b5b6eb21a85a9efd095c5d7651fe233d0f37a94c

github.com/westpa/westpa - 67d51b0c1a34fd6403f74268c24300f2fb9e9207 authored over 7 years ago by Adam Pratt <[email protected]>
Made explicit that the user should set WEST_ROOT

Former-commit-id: 3828ef5febf2873cac188f8180a5695d8a506712

github.com/westpa/westpa - 41b056c7ccc4083f89e57b4d84820d8faa69003e authored over 7 years ago by Alex DeGrave <[email protected]>
Make title underline longer.

Former-commit-id: 5e8c3819b2f7a82a6918f8f0017b4f8ba0dc046b

github.com/westpa/westpa - 9e318c6ec9201db245eeb6224a4dcb4312fff77b authored over 7 years ago by Alex DeGrave <[email protected]>
Clarified the section on aux_functions.py

Former-commit-id: aeb12e932aa958d3751fb2e09513b2e8bae01581

github.com/westpa/westpa - 0a32135124d8b80ea5600d36e4743a6d061b1001 authored over 7 years ago by Alex DeGrave <[email protected]>
System configuration is now specified using YAML.

Former-commit-id: 468b223d0d07b6fc13d5a061d0fabb2327487ea7

github.com/westpa/westpa - 95421a68260bf4c9c5d473f5b62e3522a3fb8325 authored over 7 years ago by Alex DeGrave <[email protected]>
Minor updates for clarity.

Former-commit-id: f1d7710956b2bc986a47bc7b2a415324b128da7d

github.com/westpa/westpa - b96188ec5ae8c73e3ec0b56ec6f53bd8bcd85ac3 authored over 7 years ago by Alex DeGrave <[email protected]>
Example files now use YAML to specify the binning scheme and other simulation properties. Moved auxilliary functions from system.py to aux_functions.py, and removed system.py

Former-commit-id: f0684b2064aae9569e9371cb2a1057d120eaee7d

github.com/westpa/westpa - d2e1f3e14fb15bfcbae84d054da7ed43d8160752 authored over 7 years ago by Alex DeGrave <[email protected]>
Merge remote-tracking branch 'origin/west_tools_KineticsRewrite' into west_tools_DEVELOPMENT

Rebasing the current (temp name) w_ipython development off of the
kinetics rewrite, as it's nece...

github.com/westpa/westpa - a7545fa424d92b23858ea06e1c247d9091bd4af1 authored over 7 years ago by Adam Pratt <[email protected]>
Merge pull request #27 from westpa/install_script

Install script - a script which can be used to automatically set the appropriate environment var...

github.com/westpa/westpa - 28a6dfcf946cb76a81eb30837d4befa68e4e087b authored over 7 years ago by Adam J. Pratt <[email protected]>
Merge branch 'master' into install_script

Former-commit-id: 3593b1d6104b57f123275ec473de400873ac10ca

github.com/westpa/westpa - d68c448664c69b3e610946f02a2732aac18d9a5e authored over 7 years ago by Adam J. Pratt <[email protected]>
Fixed README (third time

Former-commit-id: 472fd240bc536bac7236848976cc52dd7e509f4e

github.com/westpa/westpa - ebc8dc11d12656392f589823cb3a9cac0d419f4b authored over 7 years ago by Adam Pratt <[email protected]>
Fixed README

Former-commit-id: 5c5c4a0da9a398be46c7df692b3c072c604846b8

github.com/westpa/westpa - a61e024cc1a501b1600c28a47a0332537eb0aa2c authored over 7 years ago by Adam Pratt <[email protected]>
Fixed README

Former-commit-id: 7f885d344d1b047ed8a7a27e92d2588dccc2abfb

github.com/westpa/westpa - 083f3f7435fd94fbbe9f9dbaf552f6b48e778b64 authored over 7 years ago by Adam Pratt <[email protected]>
Updated README to document variables.

Former-commit-id: fbed43e9c55a67f44c3d6014870e2ef75ac2489e

github.com/westpa/westpa - de8de8940b50e0913faf51ddbe4f0e84e0b6a37f authored over 7 years ago by Adam Pratt <[email protected]>
Moved fluxmatrix and wkinetics to other files.

The main routines which once existed in their respective tools now exist
as classes to be called ...

github.com/westpa/westpa - 55c9e00c80e8195bf2d3950634bce7fe81c9358f authored over 7 years ago by Adam Pratt <[email protected]>
Moved the postanalysis code.

Removed some extra stuff from w_reweight. Mostly just reorganizing the
structures to be consiste...

github.com/westpa/westpa - e8bb6f26ca950bbe5b9514397fcb37da1b4923ff authored over 7 years ago by Adam Pratt <[email protected]>
Merge pull request #32 from ASinanSaglam/master

Sphinx documentation improvements

Former-commit-id: 2120ca87f4c17a8c1d9ab5b09e56c51dd29fbe06

github.com/westpa/westpa - dcfc09a577bbebc90f36ea21551abe77cba2cb51 authored over 7 years ago by Lillian Chong <[email protected]>
Added word-break to sidebar

Former-commit-id: bccddb823dff820da8f31e4780f2818dd1c87f03

github.com/westpa/westpa - 5e6927eea6ce7620dcdc292a952029a84efcd428 authored over 7 years ago by ASinanSaglam <[email protected]>
Mobile size fix, test 2

Former-commit-id: 005cf0a301a47149acd5fada4b3655c8bfeaee80

github.com/westpa/westpa - 5e6abb220b50e1d20f2201258ab78f95c35aa58d authored over 7 years ago by ASinanSaglam <[email protected]>
Fixing sizing issues on mobile

Former-commit-id: ea17440a1c6c5233da1bd1142b2abd8bd88987d3

github.com/westpa/westpa - e7688eb6269f48bd5806b4f026738ca7ad9583d3 authored over 7 years ago by ASinanSaglam <[email protected]>
Vector fix, manual changes

Former-commit-id: 5a46ed01fe6840126e63cef19a8686150982c044

github.com/westpa/westpa - 2843d9ed0a6ac44cef3da74329d39f02e4cf7d80 authored over 7 years ago by ASinanSaglam <[email protected]>
Fixed the vector logo

Former-commit-id: f00996a0e0e7de9f21c327d62fc77a8147340cd5

github.com/westpa/westpa - c5ee3414add979969a303248018b0764d0a7aaf6 authored over 7 years ago by ASinanSaglam <[email protected]>
Fixed typo with the vector logo

Former-commit-id: 5e2ad9406ae12beb39867328989469ccbd00fd02

github.com/westpa/westpa - fcd1d0c5c0a7b00f2684bed76d9282deda5303d5 authored over 7 years ago by ASinanSaglam <[email protected]>
Logo changed to vector format

Former-commit-id: 145bc97faa58d9a09a7fac8a2738667e9ce78435

github.com/westpa/westpa - 1c868473a32567c2a3fcb6dc473d67d2cac7e204 authored over 7 years ago by ASinanSaglam <[email protected]>
Slight changes to Sphinx sizing

Former-commit-id: 4d37176e4fe3a53e2e03ba47a33fd41aacb4c5e0

github.com/westpa/westpa - aaa43aad4c60f588b238a7b039c0a6c58d26a70c authored over 7 years ago by ASinanSaglam <[email protected]>
Logo test 2

Former-commit-id: f99f32b3f4807747890681485a69aa3c77cb6b89

github.com/westpa/westpa - ad31b3e53924442882da96e66d07cd0ba920b133 authored over 7 years ago by ASinanSaglam <[email protected]>
Sphinx site logo test

Former-commit-id: 3b992aff772659386556ff16014f1e0b554c57fc

github.com/westpa/westpa - 4cacb41533cba7259c4667fbef2eeee852d9deaa authored over 7 years ago by ASinanSaglam <[email protected]>
Sphinx changes, test 4

Former-commit-id: c4cd01a292a164dbb19661c15d83c140c130ddb9

github.com/westpa/westpa - 28f1d2c1f14d755f64d80c4c05950392123ce5e3 authored over 7 years ago by ASinanSaglam <[email protected]>
Typo fix in custom.css addition

Former-commit-id: 00b23fb9c2338f4404fe0f2a9b57ab7bb4313dfe

github.com/westpa/westpa - a885f34c7ef1a38bc18f6fb1c8b2099cb2670253 authored over 7 years ago by ASinanSaglam <[email protected]>
Config changes to include custom css

Former-commit-id: fa2cb289ea1738ffd579d78603b5005cca194baf

github.com/westpa/westpa - 4c34ff474175aee114038a553d52e5b2865d6760 authored over 7 years ago by ASinanSaglam <[email protected]>
Fixes to site-wide changes test 3

Former-commit-id: ba981655dfe955a7e34f15f61d3f2bbbf523c580

github.com/westpa/westpa - b1ab0f1635a32a923b1a07c4819a44f350298b43 authored over 7 years ago by ASinanSaglam <[email protected]>
Fixed header level in main index file

Former-commit-id: 14f4ed4e4949ce0c1672eeda0fe922158de68fc0

github.com/westpa/westpa - 490484593212d31381ccac4d6081806f19abfd45 authored over 7 years ago by ASinanSaglam <[email protected]>
Sphinx site-wide changes test 2

Former-commit-id: afa233d525cbb4cd5480660ce641f70f7290c1b7

github.com/westpa/westpa - 99bff4f8e6badc7e48534b7bd57e539cda5e435b authored over 7 years ago by ASinanSaglam <[email protected]>
Fixed a typo

Former-commit-id: e41d7f129385ad14ccf64c5db65dc7389bdfc38f

github.com/westpa/westpa - 2952dbc348c1020968def4c185633440aa201f65 authored over 7 years ago by ASinanSaglam <[email protected]>
Some overall changes to Sphinx page

Former-commit-id: a5f2297cd7420e33772f1d8fb6eb5b157de64eb5

github.com/westpa/westpa - bea62a5389dc94e2140a7ae306d672ffe46be024 authored over 7 years ago by ASinanSaglam <[email protected]>
Manual changes v2

Former-commit-id: c35899318f9018f5e3d75512706d9ec47f8f0bee

github.com/westpa/westpa - d2e697ef5bedfbeca59e9976c458505746addb03 authored over 7 years ago by ASinanSaglam <[email protected]>
Manual changes v1

Former-commit-id: 6f1f189ebf6cdf6d68435965f57ec7186e692c3c

github.com/westpa/westpa - 537cde02cdf8bdc8d2016761360f222902542def authored over 7 years ago by ASinanSaglam <[email protected]>
Test pandoc conversion

Former-commit-id: 71076affea9a546569cfba631cb42f1972fbbf2c

github.com/westpa/westpa - 8cf77689f80223d48288a645658b0de07055f4bd authored over 7 years ago by ASinanSaglam <[email protected]>
Small changes to citation paragraph

Former-commit-id: 869c1a2a32a79fff14127d9be5fd2d6dbf671fda

github.com/westpa/westpa - 4f0cd10975eacfdd13c78a82e00327696747d66b authored over 7 years ago by ASinanSaglam <[email protected]>
Merge pull request #30 from ASinanSaglam/master

Some changes to README

Former-commit-id: 83f7a05f041b65388d1d1f5a4cfec5f0f9a3a5fd

github.com/westpa/westpa - fb0751110756480a0284fc4c37acc268179398db authored over 7 years ago by Lillian Chong <[email protected]>
Moved around survey link and changed a sentence

Former-commit-id: a54948e2aeefaaa27e6ea201766820e50dfa082c

github.com/westpa/westpa - 51485505e7760bde0c1c758d98b1ce3e5e627837 authored over 7 years ago by ASinanSaglam <[email protected]>
Paragraph moved

Former-commit-id: ded1498040fc1d05a3bce7b909ef96c3d243f75e

github.com/westpa/westpa - 93f632dbc4cba78bbc0474ce58a4ea71009de3f4 authored over 7 years ago by ASinanSaglam <[email protected]>
Added new paragraph to "Getting Started"

Former-commit-id: 9be8f0eccc1e5b1a23a626e8334ef075bb812c6d

github.com/westpa/westpa - 09f1d1830ce729b800923c9c557251784f973e14 authored over 7 years ago by ASinanSaglam <[email protected]>
Added period after fixed link.

Former-commit-id: dbb66819519d0cb947ab1bdd8e54e1c70174b144

github.com/westpa/westpa - 6aada90d7f50ccf734be1b8596d580c0a0b82584 authored over 7 years ago by ASinanSaglam <[email protected]>