Open Science Community Saudi Arabia commits | Ecosyste.ms: OpenCollective

general cleanup

github.com/Open-Science-Community-Saudi-Arabia/sFDA-Carpentries-Workshop - 28e988214d77f150074ac51dc34f9cb8a634f562 authored almost 6 years ago

reduce output

github.com/Open-Science-Community-Saudi-Arabia/sFDA-Carpentries-Workshop - 2e2f6fad5b43b23488d74de86a12fd9b6b245b96 authored almost 6 years ago

Merge pull request #4 from carpentrieslab/master

update my fork

github.com/Open-Science-Community-Saudi-Arabia/sFDA-Carpentries-Workshop - a91eb253a18fb7921161981a6ec426c1daa78fb5 authored almost 6 years ago

Prefix code blocks with language names

Also, improve contrast of comments

Signed-off-by: Maxim Belkin <[email protected]>

github.com/Open-Science-Community-Saudi-Arabia/Beginners-Guide-for-R-through-Open-Data-Science-Practices - 514fb469241fff95afaa44afe2c0551964879d92 authored almost 6 years ago

Merge pull request #10 from ErinBecker/add-vcf-to-episodes

Convert exercises to use tidy vcf

github.com/Open-Science-Community-Saudi-Arabia/sFDA-Carpentries-Workshop - 2dd68bafc18805560e4124bf466dea6ae34db58e authored almost 6 years ago

Merge pull request #9 from ErinBecker/incorporate-vcf

Convert tidy vcf file to use vcf output from full length files

github.com/Open-Science-Community-Saudi-Arabia/sFDA-Carpentries-Workshop - 78c82395ff22844f5c2229b12446c68720232376 authored almost 6 years ago

Improve contrast of code elements

github.com/Open-Science-Community-Saudi-Arabia/Beginners-Guide-for-R-through-Open-Data-Science-Practices - 8bda280836c6cdf30d8b072124aa111d7a2bfe11 authored almost 6 years ago

start adding vcf examples to ggplot

github.com/Open-Science-Community-Saudi-Arabia/sFDA-Carpentries-Workshop - 49f4b594e701331f06651ea6f3324a53cadd9fa3 authored almost 6 years ago

convert examples to vcf dplyr episode

github.com/Open-Science-Community-Saudi-Arabia/sFDA-Carpentries-Workshop - 1a1de283c95e62e292b661e9f5d7ebf3588ff689 authored almost 6 years ago

update most examples to use vcf

github.com/Open-Science-Community-Saudi-Arabia/sFDA-Carpentries-Workshop - 4ee3c6be68d615d946fa5c21bf6cf22473490ad1 authored almost 6 years ago

change examples to tidy vcf

github.com/Open-Science-Community-Saudi-Arabia/sFDA-Carpentries-Workshop - ffc841adedb55e0f3d836baf3e8e2c9d2c9d7324 authored almost 6 years ago

rebuild tidy vcf using full vcf output

github.com/Open-Science-Community-Saudi-Arabia/sFDA-Carpentries-Workshop - e05a6635ee791d90c8ade7797b9b682764cfd89d authored almost 6 years ago

Merge pull request #3 from carpentrieslab/master

update my fork

github.com/Open-Science-Community-Saudi-Arabia/sFDA-Carpentries-Workshop - a3ffd4523f09a2613a3397bc2feaced0fe64369b authored almost 6 years ago

Merge pull request #7 from jananiravi/patch-1

Update 02-r-basics.Rmd; typos/minor edits

github.com/Open-Science-Community-Saudi-Arabia/sFDA-Carpentries-Workshop - 95cd43fc6e3874cba9b5e56782e17c78417be301 authored almost 6 years ago

clarify mode, class, type

github.com/Open-Science-Community-Saudi-Arabia/sFDA-Carpentries-Workshop - 30e1cd935d39e489c3926113032c6d3d8930ef9a authored almost 6 years ago

e.g., --> e.g.

github.com/Open-Science-Community-Saudi-Arabia/sFDA-Carpentries-Workshop - 8aa9fe77b637e61a40dc0b7750e59bffb98f098c authored almost 6 years ago

Update 02-r-basics.Rmd

github.com/Open-Science-Community-Saudi-Arabia/sFDA-Carpentries-Workshop - 7ac66a52f559eda42bcfce64ecf457cc4716aa62 authored almost 6 years ago

Merge pull request #8 from ErinBecker/master

add tidy vcf data and script

github.com/Open-Science-Community-Saudi-Arabia/sFDA-Carpentries-Workshop - 4d851585bdb8aa488ed518d97d020dcbd44e6956 authored almost 6 years ago

add tidy vcf

github.com/Open-Science-Community-Saudi-Arabia/sFDA-Carpentries-Workshop - 7b441fce85c09b969ba7d5f91932410122d53698 authored almost 6 years ago

Merge pull request #2 from carpentrieslab/master

Merge pull request #6 from ErinBecker/master

github.com/Open-Science-Community-Saudi-Arabia/sFDA-Carpentries-Workshop - 9ab1ceedd64e74dba36a0df918de5e01aeaab195 authored almost 6 years ago

Colorize all boxes

Use the same colors but apply 12.5% opacity.

Solution boxes use 30% opacity

github.com/Open-Science-Community-Saudi-Arabia/Beginners-Guide-for-R-through-Open-Data-Science-Practices - b3e88ce20aa77f474e10fed622f07d114d3194a0 authored almost 6 years ago

Update 02-r-basics.Rmd

- some minor typos/edits
- didn't any core content, yet

github.com/Open-Science-Community-Saudi-Arabia/sFDA-Carpentries-Workshop - af7957874aa1fd06b8b11912fa7c04d01af7a46e authored almost 6 years ago

Merge pull request #6 from ErinBecker/master

bring in other episodes

github.com/Open-Science-Community-Saudi-Arabia/sFDA-Carpentries-Workshop - 7a3bbbbfee8c19841ebdc5da995bda10f891d71b authored almost 6 years ago

format challenges

github.com/Open-Science-Community-Saudi-Arabia/sFDA-Carpentries-Workshop - d6e719a133637b87349548eac4bdc761aadb4a1f authored almost 6 years ago

add Kryztof's content

github.com/Open-Science-Community-Saudi-Arabia/sFDA-Carpentries-Workshop - 9ee95b6413e8de99c54d866418ed58b9cea6a84a authored almost 6 years ago

preserve config formatting

github.com/Open-Science-Community-Saudi-Arabia/sFDA-Carpentries-Workshop - 0e729142ac2ab0963f17412bc36a303a02c6196a authored almost 6 years ago

update text to match new code

github.com/Open-Science-Community-Saudi-Arabia/sFDA-Carpentries-Workshop - 54cfbe07c0dd01108a4e27f5d9f2fca14b3581d0 authored almost 6 years ago

update remaining content

github.com/Open-Science-Community-Saudi-Arabia/sFDA-Carpentries-Workshop - 46d67fe9956af342904dde214368944a2ff09597 authored almost 6 years ago

start updating plots

github.com/Open-Science-Community-Saudi-Arabia/sFDA-Carpentries-Workshop - 25a0b79a59262c2758bae1e8b698f7bff36627ba authored almost 6 years ago

reduce cog load by not teaching two graphics systems

github.com/Open-Science-Community-Saudi-Arabia/sFDA-Carpentries-Workshop - e71599c47360d0132702aaab6f609ed5c632c65a authored almost 6 years ago

remove files included in remote template

github.com/Open-Science-Community-Saudi-Arabia/sFDA-Carpentries-Workshop - 4c23570ba6c58797a23c59f01e672915e5814a9d authored almost 6 years ago

update code in 04-dplyr for new data

github.com/Open-Science-Community-Saudi-Arabia/sFDA-Carpentries-Workshop - 78aa96cfb95e21dfbeae165df9f36c48f71a9495 authored almost 6 years ago

start updating code and exercises

github.com/Open-Science-Community-Saudi-Arabia/sFDA-Carpentries-Workshop - f0a0930146508fcbb0f5f6f4cef9ec28d6a671a5 authored almost 6 years ago

put data in data directory

github.com/Open-Science-Community-Saudi-Arabia/sFDA-Carpentries-Workshop - f2ef37d60d2124447d1e244021c6ef35f9d2c873 authored almost 6 years ago

lesson_check.py: remove _config.yml from the list of required files

Pull Request: carpentries/styles#388

github.com/Open-Science-Community-Saudi-Arabia/Beginners-Guide-for-R-through-Open-Data-Science-Practices - ab8decae6cfafc87040ffec0d387cc9e403756dc authored almost 6 years ago

add other template files

github.com/Open-Science-Community-Saudi-Arabia/sFDA-Carpentries-Workshop - a6b5bb277b02c85c3193b4a600ec88929ef55526 authored almost 6 years ago

add _layouts

github.com/Open-Science-Community-Saudi-Arabia/sFDA-Carpentries-Workshop - b2cfe40c7026189c04e8d07644f387b3027b539a authored almost 6 years ago

add _includes

github.com/Open-Science-Community-Saudi-Arabia/sFDA-Carpentries-Workshop - 3b349f6c6a05a5bce54565307bd6bb6e9dbe4ba7 authored almost 6 years ago

remove unused files

github.com/Open-Science-Community-Saudi-Arabia/sFDA-Carpentries-Workshop - ca8e90dd0eb2cfb757f24cb1f4d041f276e53942 authored almost 6 years ago

convert to lesson template

github.com/Open-Science-Community-Saudi-Arabia/sFDA-Carpentries-Workshop - 26950bfb7256fe405c2311f1fc77b58ad57a7678 authored almost 6 years ago

rename episodes for new order

github.com/Open-Science-Community-Saudi-Arabia/sFDA-Carpentries-Workshop - 27f50422a8c2a1e5285544424cb06f35f3727069 authored almost 6 years ago

remove more duplicate content

github.com/Open-Science-Community-Saudi-Arabia/sFDA-Carpentries-Workshop - fde246457484f890a26cd957f9287a3325055355 authored almost 6 years ago

start removing duplicate content

github.com/Open-Science-Community-Saudi-Arabia/sFDA-Carpentries-Workshop - 96fb50c58430767574a90df61a4aeea9af4eb5c7 authored almost 6 years ago

migrate content from https://github.com/emhart/stanford-r-genomics

github.com/Open-Science-Community-Saudi-Arabia/sFDA-Carpentries-Workshop - 8b01bf4008e21ac35b032f75d81d322e5d2b39ce authored almost 6 years ago

Merge pull request #386 from gcapes/clarify-templates

Clarify wording of PR & issue templates

github.com/Open-Science-Community-Saudi-Arabia/Beginners-Guide-for-R-through-Open-Data-Science-Practices - b29e2c167bfd8877182c62a69d8a56a03f91c0ad authored about 6 years ago

Clarify wording of PR & issue templates

I see lots of contributions where none of this placeholder text has
been deleted, but also quite...

github.com/Open-Science-Community-Saudi-Arabia/Beginners-Guide-for-R-through-Open-Data-Science-Practices - 98c4617f468c3023f87e1e36358f8df1c149e257 authored about 6 years ago

edits for docker image and addition of new sample files

github.com/Open-Science-Community-Saudi-Arabia/sFDA-Carpentries-Workshop - 507fd9befd51f7f4cd4e5452cdb89ab64ee915bb authored about 6 years ago

update link for coc reporting

github.com/Open-Science-Community-Saudi-Arabia/Beginners-Guide-for-R-through-Open-Data-Science-Practices - 9abaca8cc52eb2f39be0d4a290a637e1906aaebf authored about 6 years ago

Merge pull request #379 from maxim-belkin/lesson-links

links.md: lesson-specific links

github.com/Open-Science-Community-Saudi-Arabia/Beginners-Guide-for-R-through-Open-Data-Science-Practices - 60124717ef6ff00ec80fce1309d09e58f25d0044 authored about 6 years ago

knit_lessons.sh: require 2 inputs exactly

github.com/Open-Science-Community-Saudi-Arabia/Beginners-Guide-for-R-through-Open-Data-Science-Practices - e488057711624b339109f456228ac68df9a0771a authored about 6 years ago

lesson_check.py: require _config.yml too

github.com/Open-Science-Community-Saudi-Arabia/Beginners-Guide-for-R-through-Open-Data-Science-Practices - cb4e1ddab6472c812eefb3231bf4deb614f0fd37 authored about 6 years ago

links.md: sync with downstream (lesson-example)

github.com/Open-Science-Community-Saudi-Arabia/Beginners-Guide-for-R-through-Open-Data-Science-Practices - 8b7eae1a432b77efe41d3f57bcfb84de3f4a8d93 authored about 6 years ago

.travis.yml: use Python 3.7

Signed-off-by: Maxim Belkin <[email protected]>

github.com/Open-Science-Community-Saudi-Arabia/Beginners-Guide-for-R-through-Open-Data-Science-Practices - ee234199a72c40f7c2b1ce1e7e3e809a92d715aa authored about 6 years ago

add meta tag for carpentry type

github.com/Open-Science-Community-Saudi-Arabia/Beginners-Guide-for-R-through-Open-Data-Science-Practices - 487c4b82635d1225eb8ee8f4e4f1d7a32df40faa authored about 6 years ago

CONTRIBUTING.md: remove repetitive text

github.com/Open-Science-Community-Saudi-Arabia/Beginners-Guide-for-R-through-Open-Data-Science-Practices - 8a4dfc8340be9884c27600cf810bee1b8082d5e7 authored about 6 years ago

links.md: lesson-specific links

github.com/Open-Science-Community-Saudi-Arabia/Beginners-Guide-for-R-through-Open-Data-Science-Practices - 269bfb59cb0f27a345d89d82095f9aa954358412 authored about 6 years ago

Update to inclusive language - roles

github.com/Open-Science-Community-Saudi-Arabia/Beginners-Guide-for-R-through-Open-Data-Science-Practices - 93a8400ccd1b66875e1d5bab167c3385d78cd4d1 authored about 6 years ago

Add Carpentries, LC site, issues

github.com/Open-Science-Community-Saudi-Arabia/Beginners-Guide-for-R-through-Open-Data-Science-Practices - 348a4024bdf6fd62a093894830d45336c57c4797 authored about 6 years ago

Add LC condition

github.com/Open-Science-Community-Saudi-Arabia/Beginners-Guide-for-R-through-Open-Data-Science-Practices - 28599aee6679189edfd291822bc8fcad25a58f4c authored about 6 years ago

Include LC, Lesson Program date, update language

github.com/Open-Science-Community-Saudi-Arabia/Beginners-Guide-for-R-through-Open-Data-Science-Practices - 3018b07c82957cf0937fa495bfefb01daa24f3f1 authored about 6 years ago

Update to LC inclusive language

github.com/Open-Science-Community-Saudi-Arabia/Beginners-Guide-for-R-through-Open-Data-Science-Practices - 72c72b278656a9f389961d819dce012823a5b703 authored about 6 years ago

add cp as template option

github.com/Open-Science-Community-Saudi-Arabia/Beginners-Guide-for-R-through-Open-Data-Science-Practices - cb4e249808ec5a2ecdaddbce2aaffc315747f4f9 authored about 6 years ago

Add lc to conditions, comments, text

github.com/Open-Science-Community-Saudi-Arabia/Beginners-Guide-for-R-through-Open-Data-Science-Practices - 8871a8e5974cfb3bbd27e311bcde90c7c2ceea33 authored about 6 years ago

Add LC to instruction material section

github.com/Open-Science-Community-Saudi-Arabia/Beginners-Guide-for-R-through-Open-Data-Science-Practices - 55c136ca83729a27ff80d3ea332b33ce813ae417 authored about 6 years ago

links.md: Update link to Library Carpentry lessons

Pull Request: carpentries/styles#374

github.com/Open-Science-Community-Saudi-Arabia/Beginners-Guide-for-R-through-Open-Data-Science-Practices - e67e9abcc395cb93292ffcedd9c7ed4dd65e1be9 authored about 6 years ago

Merge pull request #368 from maxim-belkin/aio-fixes

aio.md: fix indentation and variable declaration

github.com/Open-Science-Community-Saudi-Arabia/Beginners-Guide-for-R-through-Open-Data-Science-Practices - 9242afd6fbde2ed399d61f55a881f91d10b9ca98 authored about 6 years ago

Merge pull request #366 from katrinleinweber/patch-3

ISSUE_TEMPLATE.md: Nudge contributors to specify episodes unambigously

github.com/Open-Science-Community-Saudi-Arabia/Beginners-Guide-for-R-through-Open-Data-Science-Practices - a8fde65a0f78003580f84c18f48ae25ec893a94f authored about 6 years ago

aio.md: fix indentation and variable declaration

github.com/Open-Science-Community-Saudi-Arabia/Beginners-Guide-for-R-through-Open-Data-Science-Practices - c40e5523b88ce751edfc9ffb86e27c32f3bb9e16 authored about 6 years ago

Nudge contributors to specify episodes unambigously

See https://github.com/swcarpentry/r-novice-inflammation/issues/401 > 3.

github.com/Open-Science-Community-Saudi-Arabia/Beginners-Guide-for-R-through-Open-Data-Science-Practices - f40a94757aa8379c1c4bad47ad729229bbdb5e68 authored about 6 years ago

Merge pull request #359 from sdruskat/gh-pages

Fix https://github.com/carpentries/workshop-template/issues/540

github.com/Open-Science-Community-Saudi-Arabia/Beginners-Guide-for-R-through-Open-Data-Science-Practices - 1f3c60f7358f92cda816eb17aef6fdb51a543c04 authored over 6 years ago

Fix https://github.com/carpentries/workshop-template/issues/540

github.com/Open-Science-Community-Saudi-Arabia/Beginners-Guide-for-R-through-Open-Data-Science-Practices - 52f53e0b1e1d343a1ed781ecad7c3018ac4ad309 authored over 6 years ago

add section on contributing in README

github.com/Open-Science-Community-Saudi-Arabia/sFDA-Carpentries-Workshop - c1a8cf95626fee52d1718b447088dc90599e8241 authored over 6 years ago

use correct folder

github.com/Open-Science-Community-Saudi-Arabia/sFDA-Carpentries-Workshop - 8b20af783b7a9a40819353981dd832f67b239c27 authored over 6 years ago

try to delete the .gitignore

github.com/Open-Science-Community-Saudi-Arabia/sFDA-Carpentries-Workshop - 9174bc0aefe46483ce2203aaa3aa3f07834301f0 authored over 6 years ago

add README file

github.com/Open-Science-Community-Saudi-Arabia/sFDA-Carpentries-Workshop - 44bba8f5d2f9cfb0d8d2a066fde748ec74c9a083 authored over 6 years ago

update deployment scripts

github.com/Open-Science-Community-Saudi-Arabia/sFDA-Carpentries-Workshop - 97e7be7e6bd480e4fad9f2bf41304f83e07d5818 authored over 6 years ago

Use Rmd + Travis (#5)

* move episode files

* move image files

* [fix #2] convert episodes to Rmd

* fix setup ...

github.com/Open-Science-Community-Saudi-Arabia/sFDA-Carpentries-Workshop - e6a78cce172e3311270b462ce7dbf5f3c5516b5e authored over 6 years ago

Merge pull request #4 from carpentrieslab/switch-remote-theme

Switch to remote theme

github.com/Open-Science-Community-Saudi-Arabia/sFDA-Carpentries-Workshop - 0ff53b9922523cd6fdb825d5c16223318c8299bb authored over 6 years ago

Merge branch 'master' into switch-remote-theme

github.com/Open-Science-Community-Saudi-Arabia/sFDA-Carpentries-Workshop - 0cd5a1c0b586087bc5ef19fabab322a86ba300a1 authored over 6 years ago

switch to using remote theme

github.com/Open-Science-Community-Saudi-Arabia/sFDA-Carpentries-Workshop - aa2c9c634895041613b8a5e9e48fe70531ef6584 authored over 6 years ago

fix typos and edit text

github.com/Open-Science-Community-Saudi-Arabia/sFDA-Carpentries-Workshop - 6526cadc586be65bfec23729aa90fe84149a535b authored over 6 years ago

update formatting

github.com/Open-Science-Community-Saudi-Arabia/sFDA-Carpentries-Workshop - 3a8530031eed48d5614f26eed8c5bd622d8c5894 authored over 6 years ago

finish episode 3 and reorganize

github.com/Open-Science-Community-Saudi-Arabia/sFDA-Carpentries-Workshop - fd16bbe08ef493ca779022358d1e2114070dc02f authored over 6 years ago

begin lesson 3

github.com/Open-Science-Community-Saudi-Arabia/sFDA-Carpentries-Workshop - 5f1c513d0acd527fa2a1331934a5784e17d6354a authored over 6 years ago

add some bonus material

github.com/Open-Science-Community-Saudi-Arabia/sFDA-Carpentries-Workshop - b03b30f89632847719fd1a8d4e9cbed52f3c3496 authored over 6 years ago

complete episode 3 up to ordering factors

github.com/Open-Science-Community-Saudi-Arabia/sFDA-Carpentries-Workshop - 8432afa6c9f5b047f50bdadbbdcce3a62accb2ca authored over 6 years ago

complete coercion section

github.com/Open-Science-Community-Saudi-Arabia/sFDA-Carpentries-Workshop - 1658c407f87e85a988e613cf84faf9037ebb26cb authored over 6 years ago

get up to coercing factors

github.com/Open-Science-Community-Saudi-Arabia/sFDA-Carpentries-Workshop - e0ad9970460d6b6fe16bd96c15226333beddb0ad authored over 6 years ago

add images

github.com/Open-Science-Community-Saudi-Arabia/sFDA-Carpentries-Workshop - e2cf98bc5f88a190db1d4dbb128c72c216d42f22 authored over 6 years ago

intermeidate up to logical indexing

github.com/Open-Science-Community-Saudi-Arabia/sFDA-Carpentries-Workshop - f5cf54077b1a5d147cb5893228d650a5bb7df369 authored over 6 years ago

finish episode 2 add 3

github.com/Open-Science-Community-Saudi-Arabia/sFDA-Carpentries-Workshop - e36989a63848e7341e29c4e0d0cdb370f79aead9 authored over 6 years ago

complete up to math with objects

github.com/Open-Science-Community-Saudi-Arabia/sFDA-Carpentries-Workshop - 1c8ce34adeceded474e47d3683582d89553c3bd0 authored over 6 years ago

update screenshots and instructions for Rstudio Server 1.1

github.com/Open-Science-Community-Saudi-Arabia/sFDA-Carpentries-Workshop - 8626181ce61ec9f311af38ad6a166a80b0eda559 authored over 6 years ago

update screenshots and instructions for Rstudio Server 1.1

github.com/Open-Science-Community-Saudi-Arabia/sFDA-Carpentries-Workshop - 7db187afc6af70d2641d935a8063de749bc99255 authored over 6 years ago

fix typos and add context help images

github.com/Open-Science-Community-Saudi-Arabia/sFDA-Carpentries-Workshop - 089aae0305798260dcbda082ef6d85afc9032b30 authored over 6 years ago

intermediate commit

github.com/Open-Science-Community-Saudi-Arabia/sFDA-Carpentries-Workshop - 5d9b2bb91830cdd502d8c0188f64e0b23990e2a9 authored over 6 years ago

push changes to episode 2

github.com/Open-Science-Community-Saudi-Arabia/sFDA-Carpentries-Workshop - b8996a22c5e0b60ec08e8dd6972f10ff36c91fc6 authored over 6 years ago

initial commit with index page and some of lesson 01

github.com/Open-Science-Community-Saudi-Arabia/sFDA-Carpentries-Workshop - bc826abda62727f1b6ec87d3ea1c5103a13427ee authored over 6 years ago

add images and 01 episode content

github.com/Open-Science-Community-Saudi-Arabia/sFDA-Carpentries-Workshop - 35c280fb2f6bb9956ff6bed19d259e7c579c51e0 authored over 6 years ago

Remove gh-variables from links.md

github.com/Open-Science-Community-Saudi-Arabia/sFDA-Carpentries-Workshop - a9553db43d56a13209fb6d4e7d5209e414e25fb6 authored over 6 years ago