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An open API service for software projects hosted on Open Collective.

ggtree

tree visualization and annotation
Collective - Host: opensource - https://opencollective.com/ggtree - Code: https://github.com/GuangchuangYu/ggtree

bump x.y.z versions to even y prior to creation of RELEASE_3_7 branch

github.com/YuLab-SMU/ggtree - 4d06152be9ce3deb30c3cf7da42d072ec3c97bcd authored over 6 years ago
reexport read.astral

github.com/YuLab-SMU/ggtree - 0b803ba8023fc545c9a0b497df86bc1aa3505523 authored almost 7 years ago
reexport read.iqtree

github.com/YuLab-SMU/ggtree - 7d3e7190684d6fe6901b035e841cb1d879e0a825 authored almost 7 years ago
import read.iqtree

github.com/YuLab-SMU/ggtree - 8caaa268f697267fd12406548a7f2c24766a9302 authored almost 7 years ago
update docs

github.com/YuLab-SMU/ggtree - 1a318d4d0a0a861c579e2d2284c38df76e32aa1a authored almost 7 years ago
fixed links

github.com/YuLab-SMU/ggtree - 2ea8a3b5b8e4a8e22f7ef694e22a261155510933 authored almost 7 years ago
optimize geom-treescale

github.com/YuLab-SMU/ggtree - 8407d2ab6978602742801e7478eb3c6ba2225481 authored almost 7 years ago
add new contributor

github.com/YuLab-SMU/ggtree - 1e2cf3a515247e9ae6afadb97d9c3615f08406d2 authored almost 7 years ago
Merge pull request #170 from heavywatal/patch-1

Add a contributor

github.com/YuLab-SMU/ggtree - 3675e87a67b31841e35334ef20362841b64e6719 authored almost 7 years ago
update tweet img

github.com/YuLab-SMU/ggtree - 92fc6b78e229db1686e01646594f23b542dc363e authored almost 7 years ago
update link

github.com/YuLab-SMU/ggtree - d25915cc853c0d7adc83182da4d46a6615d8d281 authored almost 7 years ago
remove website

github.com/YuLab-SMU/ggtree - deb8e67de32cdf491a7fb884e60e54bd9451ef78 authored almost 7 years ago
mv site to http://guangchuangyu.github.io/software/ggtree

github.com/YuLab-SMU/ggtree - 71a7404d3d57a30b241e77daa22e3870cbdd419a authored almost 7 years ago
mv site to http://guangchuangyu.github.io/software/ggtree

github.com/YuLab-SMU/ggtree - 7918c8b0b3176d9456297ac0c7215b0eb0da0aeb authored almost 7 years ago
redirect site

github.com/YuLab-SMU/ggtree - 168c0843b37b8cf105b9f26284022e3e9babdcc9 authored almost 7 years ago
Add a contributor

@heavywatal refactored layoutDaylight in #165 and #169

github.com/YuLab-SMU/ggtree - 9263a7df984109fcca85071d9c7753c49ec86957 authored almost 7 years ago
Merge pull request #169 from heavywatal/refactor-daylight-2

Refactor layoutDaylight part 2

github.com/YuLab-SMU/ggtree - 7c3f061c5c45f57390286bac43094b24fc1201ce authored almost 7 years ago
Refactor layoutDaylight part 2

- Cache frequent and expensive lookup such as `df$x`
- Exclude nodes in vectorized manner before...

github.com/YuLab-SMU/ggtree - fc03966cd4482ea9b664729e9eae3a002403b546 authored almost 7 years ago
geom_tiplab2 works with mapping = aes(subset) defined by users

github.com/YuLab-SMU/ggtree - 40a372c1f873d4cf08fd648cb4e1a11399dbdfcc authored almost 7 years ago
Merge pull request #165 from heavywatal/refactor-daylight

Refactor layoutDaylight and its related functions

github.com/YuLab-SMU/ggtree - 1b7776222dce98959ee5661308739a320150303f authored almost 7 years ago
treeio in Remotes field

github.com/YuLab-SMU/ggtree - 114673e72c91f3ecf96f5e9a70c3e458d82bc3d5 authored almost 7 years ago
new citations

github.com/YuLab-SMU/ggtree - b4d1bf997974d35744fa6c4efc548088bd0388ca authored almost 7 years ago
Refactor layoutDaylight and its related functions

- Replace loops with dplyr::mutate or purrr::map
- Return consistent values from getChild.df and...

github.com/YuLab-SMU/ggtree - 2fa23352c6afe02797e5446e285f7a9667b7f6e6 authored almost 7 years ago
update tweets

github.com/YuLab-SMU/ggtree - 582cb21ebe549e465a11b8d3513b62bb7c9fc029 authored almost 7 years ago
update geom_tippoint

github.com/YuLab-SMU/ggtree - a67ffa2864fa0671f315cc2edd1bafee004019bc authored almost 7 years ago
update makefile

github.com/YuLab-SMU/ggtree - d64c3b9541eb5e1d26930f2ef6d17e6ed2453242 authored almost 7 years ago
support passing `aes(subset)` in geom_nodepoint

github.com/YuLab-SMU/ggtree - 897c2ec4a6b88cad871e54b4b7f2ba1b75ea4c1d authored almost 7 years ago
update readme

github.com/YuLab-SMU/ggtree - 9b62981d60bba840e2391025ad4aecd52f321158 authored about 7 years ago
fine tune y position after flip; flip compatible with collapse

github.com/YuLab-SMU/ggtree - cf8b3bfe0a47de72924d422c0f1ca2a2c1150c10 authored about 7 years ago
update citation

github.com/YuLab-SMU/ggtree - 3708794e4104fe9e2509be45598d8e65d2b83fae authored about 7 years ago
new citation

github.com/YuLab-SMU/ggtree - 3f398f6a9ec19d55170b94af5d59173a447e51df authored about 7 years ago
update readme

github.com/YuLab-SMU/ggtree - 55824e6560d5f65b2661a2cd1ea3e2ec7f4fab77 authored about 7 years ago
update readme

github.com/YuLab-SMU/ggtree - a5086475acd984cc06afa72b63e0414cd1226d8f authored about 7 years ago
update vignettes

github.com/YuLab-SMU/ggtree - 0266c285dce27b34ccd251e7e3d99d66dc5f615a authored about 7 years ago
update makefile

github.com/YuLab-SMU/ggtree - 38cc4744f32f0aae668dd7d70d8face95b0d3e85 authored about 7 years ago
update makefile

github.com/YuLab-SMU/ggtree - ead856b219230d0c974fc73f2ec26348437c413b authored about 7 years ago
add example of print tree with specific angle in treeVisualization vignetee

github.com/YuLab-SMU/ggtree - 2794a0e5ad54319bd7d546c785bc28e36281436e authored about 7 years ago
extra vignette in homepage

github.com/YuLab-SMU/ggtree - 6cda60e2ba2b7c6c91880fc393a94379bb49b189 authored about 7 years ago
treeVisualization vignette

github.com/YuLab-SMU/ggtree - 149acb32b24c72726ed619d0c07683ddf9acd823 authored about 7 years ago
unrooted layout

github.com/YuLab-SMU/ggtree - b681f0b46becf0bc41e9921700b2f9c64b71359a authored about 7 years ago
update ggtree vignette

github.com/YuLab-SMU/ggtree - 68c3e3afaf6b021fe3c540d79fca3b75acd82a64 authored about 7 years ago
update vignette

github.com/YuLab-SMU/ggtree - 3be56e900dfe0f4105bed88adfbdfbfc456bb8ad authored about 7 years ago
update msaplot to use DNAbin/AAbin

github.com/YuLab-SMU/ggtree - 015f54b5ac8586d0523a27630c4615bce469152e authored about 7 years ago
clean up code

github.com/YuLab-SMU/ggtree - 14ff9149b23d4d4dd68cca144c0c35464491bbef authored about 7 years ago
clean up code

github.com/YuLab-SMU/ggtree - eb57da3ec9c6c5328d3377946261d106cd2934f9 authored about 7 years ago
update according to treeio and tidytree

github.com/YuLab-SMU/ggtree - fcbe901fcfb90eb272abfed1334fe55ed17ba4c7 authored about 7 years ago
comment out code

github.com/YuLab-SMU/ggtree - 0369424fbbf0017871f4adeca5f8d682634405d1 authored about 7 years ago
update readme

github.com/YuLab-SMU/ggtree - a78528ef51337945f2ca6289f0037bb88928089f authored about 7 years ago
move source code to tidytree

github.com/YuLab-SMU/ggtree - 452376180ffa9e2775c6268f75e39f700c5603df authored about 7 years ago
remove paml_rst, codeml_mlc, codeml and jplace fortify methods according to the change of treeio (v = 1.3.3)

github.com/YuLab-SMU/ggtree - 6be958c59cdd5f93a2b6488e3b976c45f96899a9 authored about 7 years ago
keep tree order #157

github.com/YuLab-SMU/ggtree - 595ee49e1a1f53901d03ad3ff1476ab5dea0bb3a authored about 7 years ago
using treedata object to store jplace tree

github.com/YuLab-SMU/ggtree - 93e6a44b6551d11618dd49880f7f5aab9c0f84c1 authored about 7 years ago
remove beast object support as read.beast output treedata object in treeio <2017-12-05, Tue>

github.com/YuLab-SMU/ggtree - 13af7bc0a2451e7d37c28d7fe10b05178ca42587 authored about 7 years ago
remove theme_transparent

github.com/YuLab-SMU/ggtree - 9125fc57211a23611889f406e1ae1309dd66bee6 authored about 7 years ago
ggtree with image files

github.com/YuLab-SMU/ggtree - ea38627aa87f0153d66c2c2fd377e3ccdf133cd8 authored about 7 years ago
geom_tiplab enhancement

github.com/YuLab-SMU/ggtree - d50bc7b6d5b05ce29a2f580c52637f90fe56686b authored about 7 years ago
plea to against bmc

github.com/YuLab-SMU/ggtree - 6640ed240103ef81a42bce0d5983c6cd648aa02c authored about 7 years ago
mrsd for treedata object

github.com/YuLab-SMU/ggtree - b7381e839d9100c785ddbc95f8779d068b3f65f5 authored about 7 years ago
add new citation

github.com/YuLab-SMU/ggtree - 8f72546019d05361d06ca4133f9b3ae3c9f91f0f authored about 7 years ago
bump x.y.z versions to odd y after creation of RELEASE_3_6 branch

github.com/YuLab-SMU/ggtree - ff03e4c3880eed922a29188bb5adb6c36e0aae28 authored about 7 years ago
bump x.y.z versions to even y prior to creation of RELEASE_3_6 branch

github.com/YuLab-SMU/ggtree - 3475de11e1322f881c03e4f432e717ce1c51e35a authored about 7 years ago
change MRCA_internal parameter name

github.com/YuLab-SMU/ggtree - 07063f95a74aee6b9c965efae96f9c99c6d1006c authored over 7 years ago
new gallery image

github.com/YuLab-SMU/ggtree - d30f6545d96780221b521a76d6927c494e51fc06 authored over 7 years ago
gallery image

github.com/YuLab-SMU/ggtree - 963e3994734e75a0640e88aef0627dc99a068ab0 authored over 7 years ago
fixed R check for #152

github.com/YuLab-SMU/ggtree - 9653250666d21c4b8596bf6cbb273bf1e88f7293 authored over 7 years ago
Merge pull request #152 from JustGitting/master

Add annotation functions for unrooted tree layouts and other fixes.

github.com/YuLab-SMU/ggtree - f4f64c2f22a388eec6cfd2b07f208ffc5bc7c052 authored over 7 years ago
Merged changes from upstream into origin branches.

Merge remote-tracking branch 'upstream/master'

# Conflicts:
# R/geom_cladelabel.R
# R/geom_hili...

github.com/YuLab-SMU/ggtree - 7790e533be4949b88619c9fbf563317abaffdc79 authored over 7 years ago
Updated tidytree::rotateTreePoints() to rotate labels correctly.

github.com/YuLab-SMU/ggtree - 1cfeeff11973e7538ec7b18c3d79ad5cbaf33026 authored over 7 years ago
set_hilight_legend

github.com/YuLab-SMU/ggtree - f25c1cdddf98036233c62d164be0a9c275a12cbd authored over 7 years ago
geom_motif #148

github.com/YuLab-SMU/ggtree - 363c0555cd4c7ca0671b951319409a70f79234e5 authored over 7 years ago
update makefile

github.com/YuLab-SMU/ggtree - c84682c4cf4440f38dfb00a0f250818e244e2f38 authored over 7 years ago