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ggtree

tree visualization and annotation
Collective - Host: opensource - https://opencollective.com/ggtree - Code: https://github.com/GuangchuangYu/ggtree

bump version

github.com/YuLab-SMU/ggtree - 8ffce60dd1c641dc0448142869405f6d1f265e63 authored over 3 years ago by Guangchuang Yu <[email protected]>
Merge pull request #431 from xiangpin/align_hilight

introduce align argument in geom_hilight

github.com/YuLab-SMU/ggtree - 3cac5815d260ce54e0b36b5a2f49d02776b4828d authored over 3 years ago by Guangchuang Yu <[email protected]>
introduce align arg

github.com/YuLab-SMU/ggtree - 553dc9afa7eb1c5a75d5e1264e97a61ed04f8c96 authored over 3 years ago by xiangpin <[email protected]>
fixed bug

github.com/YuLab-SMU/ggtree - 722ba5cba1be11d13c4dabf97a34a78066d48787 authored over 3 years ago by Guangchuang Yu <[email protected]>
update docs

github.com/YuLab-SMU/ggtree - 6e3cb68e365ef3f4fe79040ba4a8aeff06119ab5 authored over 3 years ago by Guangchuang Yu <[email protected]>
Merge pull request #430 from xiangpin/data.function_geom_facet

data argument of geom_facet supporting function

github.com/YuLab-SMU/ggtree - 523121d9073793c9fa29dd38795e9a7f886f3e71 authored over 3 years ago by Guangchuang Yu <[email protected]>
data argument of geom_facet supporting function

github.com/YuLab-SMU/ggtree - 5bd68ca0d6fcc34fd1487e0242616c9e4ad76e9a authored over 3 years ago by xiangpin <[email protected]>
Merge pull request #429 from xiangpin/import_pkg

remove rvcheck depend

github.com/YuLab-SMU/ggtree - e6b8ff6a98bdb006445281539f918f29ba17fe19 authored over 3 years ago by Guangchuang Yu <[email protected]>
update docs

github.com/YuLab-SMU/ggtree - d95ec3966cff0685067b86bbbda4491629c25293 authored over 3 years ago by Guangchuang Yu <[email protected]>
remove rvcheck depend

github.com/YuLab-SMU/ggtree - 99b0a413563e897a81f9c7b7a62426a9a3e852a6 authored over 3 years ago by xiangpin <[email protected]>
update docs

github.com/YuLab-SMU/ggtree - ede413662029e71d4e843dbc0d0c0beb39917992 authored over 3 years ago by Guangchuang Yu <[email protected]>
Merge pull request #427 from xiangpin/option_slanted

options to control the line type of radial

github.com/YuLab-SMU/ggtree - 0d5f11dcc48af46833e141c2ced2c889285267d6 authored over 3 years ago by Guangchuang Yu <[email protected]>
Update geom_tree.R

github.com/YuLab-SMU/ggtree - 91d852469063f34863de9a44bcacdb86a05e3d69 authored over 3 years ago by Guangchuang Yu <[email protected]>
options to control the line type of radial

github.com/YuLab-SMU/ggtree - 1676c1c749f8d09f773fab7c8421de41ed744141 authored over 3 years ago by xiangpin <[email protected]>
bump up version

github.com/YuLab-SMU/ggtree - e8acbda54f029c0f1c99955fe2c2be8b76c842cd authored over 3 years ago by Guangchuang Yu <[email protected]>
Merge pull request #426 from xiangpin/geom_tiplab_data

fix the issue of data argument of geom_tiplab

github.com/YuLab-SMU/ggtree - c801d1aad0c26c5a7476e840373ae7e5e73bb890 authored over 3 years ago by Guangchuang Yu <[email protected]>
fix the data argument of geom_tiplab

github.com/YuLab-SMU/ggtree - 9d9b6acece90dd81d9e31b48d5428580dfad85a8 authored over 3 years ago by xiangpin <[email protected]>
export position argument of geom_tree

github.com/YuLab-SMU/ggtree - 7b7f4cbc056af334ffa7e66904165832bee90b4a authored over 3 years ago by xiangpin <[email protected]>
update docs

github.com/YuLab-SMU/ggtree - 6e9e7e27850f77add449b3c1c0e2c1e7567bc632 authored over 3 years ago by Guangchuang Yu <[email protected]>
Merge pull request #421 from xiangpin/geom_hilight_cladelab_function_data_and_td_mutate

add td_mutate and geom_hilight, geom_cladelab supporting fuction data

github.com/YuLab-SMU/ggtree - 217aea407405a23447f784443b238d08ce65bcda authored over 3 years ago by Guangchuang Yu <[email protected]>
straight line in radial layout

github.com/YuLab-SMU/ggtree - 920a057cfd239a004f7b0abb1940316f9995e4bc authored over 3 years ago by xiangpin <[email protected]>
add td_mutate and hilight or cladelab supporting fuction data

github.com/YuLab-SMU/ggtree - 8da1b32d3623c5d30e546312e17fefd0a1da9dfe authored over 3 years ago by xiangpin <[email protected]>
update news

github.com/YuLab-SMU/ggtree - bfa4bba3ed7b0459c69d5fba885f72e4c778bb57 authored over 3 years ago by Guangchuang Yu <[email protected]>
Merge pull request #418 from xiangpin/tiplab_fontface

fixed fontface of aes

github.com/YuLab-SMU/ggtree - d599ccf41977107e1211a8307ec9809917d29344 authored over 3 years ago by Guangchuang Yu <[email protected]>
fixed fontface of aes

github.com/YuLab-SMU/ggtree - a7b0f8eb054b103dfca232aec26a56ab9b6e5c4a authored over 3 years ago by xiangpin <[email protected]>
bump version up

github.com/YuLab-SMU/ggtree - 7b03d4c1c4cfd72820c5ba5d03079c90aa1a80ae authored over 3 years ago by Guangchuang Yu <[email protected]>
update docs

github.com/YuLab-SMU/ggtree - b7a8e27aaca23ea8565fb5a155db2ed1347beae1 authored over 3 years ago by Guangchuang Yu <[email protected]>
Merge pull request #414 from xiangpin/Unrooted_branch

add branch.x and branch.y for unrooted layout

github.com/YuLab-SMU/ggtree - 58495f5d43cce18566a700b900aa955a4c9797fc authored over 3 years ago by Guangchuang Yu <[email protected]>
fix vector logical check

github.com/YuLab-SMU/ggtree - c6c351a60bec9a581cb3a239ab39eb3770c61fc2 authored over 3 years ago by xiangpin <[email protected]>
branch.x and branch.y for branch label of unrooted layout

github.com/YuLab-SMU/ggtree - 64fcaa9ed7ef474c2187523ceb54df8dc4a9c61b authored over 3 years ago by xiangpin <[email protected]>
update docs

github.com/YuLab-SMU/ggtree - 765d04e9b93725b7a3761a97ef8e568037d1b434 authored over 3 years ago by Guangchuang Yu <[email protected]>
Merge pull request #411 from xiangpin/geom_range

optimizing geom_range to support the mapping of color, size.

github.com/YuLab-SMU/ggtree - 4ed362e0805ffd604c6f3869ac0d57d149bc3ab1 authored over 3 years ago by Guangchuang Yu <[email protected]>
Merge remote-tracking branch 'upstream/master' into geom_range

github.com/YuLab-SMU/ggtree - d15cabb181764ec9c6a8e3551a7afb3b553b5efc authored over 3 years ago by xiangpin <[email protected]>
geom_range supports aes mapping

github.com/YuLab-SMU/ggtree - 960e999fcb83b07bcfde87a4ad04d1849ff37e6d authored over 3 years ago by xiangpin <[email protected]>
bug fixed

github.com/YuLab-SMU/ggtree - fcdd2f5a4f5f36aa1ea001cda44f1f4832aaf0b5 authored over 3 years ago by Guangchuang Yu <[email protected]>
Merge pull request #410 from LPDagallier/patch-1

Update geom_range.R to fix issue #306

github.com/YuLab-SMU/ggtree - 861f8a259fc48ec1891d3dcc54fbf72a9ecfb655 authored over 3 years ago by Guangchuang Yu <[email protected]>
update docs

github.com/YuLab-SMU/ggtree - 40edbafd5dccc078540555f36c3ce6c7f8fe77b8 authored over 3 years ago by Guangchuang Yu <[email protected]>
Update geom_range.R to fix issue #306

Change the signs (+ and -) in order to correctly plot the lower and upper values of the ranges i...

github.com/YuLab-SMU/ggtree - 545dbbff9b87fbf88335da04ab2b4611d4cdaf6b authored over 3 years ago by Léo-Paul Dagallier <[email protected]>
Merge pull request #408 from xiangpin/new_nodelab_tiplab

new geom_nodelab and geom_tiplab

github.com/YuLab-SMU/ggtree - 1cd59841ccbf4cc97bafa3e96f3ab9b386312139 authored over 3 years ago by Guangchuang Yu <[email protected]>
new geom_nodelab and geom_tiplab

github.com/YuLab-SMU/ggtree - 8097ac49d853b811e26227d13b44c2fbbff49607 authored over 3 years ago by xiangpin <[email protected]>
Merge pull request #406 from xiangpin/geom_nodelab

update geom_tiplab for better compatibility with geom_nodelab

github.com/YuLab-SMU/ggtree - 8a9b47843dbb10ba62fbb4eab10448445c4a14d4 authored over 3 years ago by Guangchuang Yu <[email protected]>
remove match.call

github.com/YuLab-SMU/ggtree - e56c8b984d623fd1c236c352061eb1e9b3659f8f authored over 3 years ago by xiangpin <[email protected]>
Merge pull request #403 from xiangpin/LayoutApe

fix ape layout branch.length

github.com/YuLab-SMU/ggtree - 6b487a177e4670d0701d8f29f1e3d90a9a09028e authored over 3 years ago by Guangchuang Yu <[email protected]>
fix ape layout branch.length

github.com/YuLab-SMU/ggtree - f4a7ca94404be8f917aa41743d1b5614f47c8a1b authored over 3 years ago by xiangpin <[email protected]>
new release

github.com/YuLab-SMU/ggtree - 2e42b856aa0e66340d300f0a60859050a4a6536b authored over 3 years ago by Guangchuang Yu <[email protected]>
bump x.y.z version to odd y following creation of RELEASE_3_13 branch

github.com/YuLab-SMU/ggtree - 419488da0b913031b0a01d87bd2552373ad95084 authored over 3 years ago by Nitesh Turaga <[email protected]>
bump x.y.z version to even y prior to creation of RELEASE_3_13 branch

github.com/YuLab-SMU/ggtree - 189e5193eff5142af4e7464db5550a2b1ff5bdb4 authored over 3 years ago by Nitesh Turaga <[email protected]>
bump version up

github.com/YuLab-SMU/ggtree - 384cc42a2cf5b6200756fc607b00a00598c65a25 authored over 3 years ago by Guangchuang Yu <[email protected]>
bump version

github.com/YuLab-SMU/ggtree - 7afb395ece66749180d967eb4bcbc3c385b2816d authored over 3 years ago by Guangchuang Yu <[email protected]>
Merge pull request #396 from xiangpin/dev

optimize the angle of text in geom_cladelab and don't inherit the global aes in geom_cladelab an...

github.com/YuLab-SMU/ggtree - 90d71975094952be27c439cd5b07759dc8b35346 authored over 3 years ago by Guangchuang Yu <[email protected]>
inherited variable of tree data

github.com/YuLab-SMU/ggtree - 4aa800897165a6e22acc7248bf22be2884ed9416 authored over 3 years ago by xiangpin <[email protected]>
Merge pull request #394 from romainfrancois/mutate

not stealing dplyr:::mutate.data.frame()

github.com/YuLab-SMU/ggtree - 31458a07a8040ceeeb4b8d29831ed524ef44ce6a authored over 3 years ago by Guangchuang Yu <[email protected]>
optimize the angle of text in geom_cladelab

github.com/YuLab-SMU/ggtree - 34c0cc0a7291026b3f4d4c9c85c6f991e20d1339 authored over 3 years ago by xiangpin <[email protected]>
not stealing dplyr:::mutate.data.frame()

github.com/YuLab-SMU/ggtree - 80b1a5bb1de5b8954542d3b436f8b7e2a3a53167 authored over 3 years ago by Romain Francois <[email protected]>
Merge branch 'upmaster' into dev

github.com/YuLab-SMU/ggtree - 31325290d41b2673cd97ef988bd3294522e241b6 authored over 3 years ago by xiangpin <[email protected]>
don't inherit aes for geom_cladelab and geom_taxalink

github.com/YuLab-SMU/ggtree - d13f19e84b7a34a3fbcf6e54cae249ac2106890d authored over 3 years ago by xiangpin <[email protected]>
Merge pull request #392 from xiangpin/dev

The optimization of internal function of geom_tiplab

github.com/YuLab-SMU/ggtree - 06b7aea9019487dcc75e4b3b5f071192d2fde5a9 authored over 3 years ago by Guangchuang Yu <[email protected]>
Update geom_tiplab.R

github.com/YuLab-SMU/ggtree - 8e375b77fdcb8807cba3cd99cc6f3ba3adbef1e3 authored over 3 years ago by Guangchuang Yu <[email protected]>
nudge_x can also work like offset

github.com/YuLab-SMU/ggtree - 66052971bb48163b5b4b68221e0fc4444663819c authored over 3 years ago by xiangpin <[email protected]>
continuos is not implemented for roundrect or ellipse layout

github.com/YuLab-SMU/ggtree - 686425c7ed57f8cdf325d3d7155d3e61ddb3db08 authored over 3 years ago by xiangpin <[email protected]>
update the man of geom_tiplab

github.com/YuLab-SMU/ggtree - d8c602e20de7ed515e5074d1a61a7bc86e823982 authored over 3 years ago by xiangpin <[email protected]>
optimization geom_tiplab and geom_nodelab

github.com/YuLab-SMU/ggtree - 424ce5c26114894050bf13b639cb98c1cc068161 authored over 3 years ago by xiangpin <[email protected]>
update docs

github.com/YuLab-SMU/ggtree - fa43832b255f8823faaddaac8814374aba561899 authored over 3 years ago by Guangchuang Yu <[email protected]>
Merge pull request #387 from xiangpin/master

remove inhibit.size and use continuous replace

github.com/YuLab-SMU/ggtree - 21c693e0bb16292419c0b4510d6f41a7bff993a1 authored over 3 years ago by Guangchuang Yu <[email protected]>
remove extra code and export continuous arg

github.com/YuLab-SMU/ggtree - 04c989dcd19398f7440030767ac91537f8a444e8 authored over 3 years ago by xiangpin <[email protected]>
Update geom_tree.R

github.com/YuLab-SMU/ggtree - 329a64affea4c639464f761910051941617a99b8 authored over 3 years ago by Guangchuang Yu <[email protected]>
changed continuous default to none

github.com/YuLab-SMU/ggtree - dd969272fbb8d28e84b85960bf224cb0ac9a0c8d authored over 3 years ago by xiangpin <[email protected]>
changed continuous default to none

github.com/YuLab-SMU/ggtree - 23320ae38969202de91e9ecfd7977fc26616d27f authored over 3 years ago by xiangpin <[email protected]>
remove inhibit.size and continuous control the size and color to be continuous

github.com/YuLab-SMU/ggtree - 6d0ae941c56b2446ee42f6f4c94ab885d0b090e3 authored over 3 years ago by xiangpin <[email protected]>
update news

github.com/YuLab-SMU/ggtree - 4f54091eb901993e6f8d400274969f1a3399ccc2 authored over 3 years ago by Guangchuang Yu <[email protected]>
Merge pull request #385 from xiangpin/master

update stat method of tree layout

github.com/YuLab-SMU/ggtree - a0322a9d5105ce378df21489849d0a82280494cb authored over 3 years ago by Guangchuang Yu <[email protected]>
comment for inhibit.size

github.com/YuLab-SMU/ggtree - 72c0cb501dda521706dd4efc649711b4f4095161 authored over 3 years ago by xiangpin <[email protected]>
add new argument for aes(size=I(variable))

github.com/YuLab-SMU/ggtree - f6115513dceeb87fb3833c17d81fa3f54ed7ffce authored over 3 years ago by xiangpin <[email protected]>
update stat tree for multiple color using ggnewscale and color-variable contains NA

github.com/YuLab-SMU/ggtree - 99c7e1007930c5ebe07117b47392068c3b78ade6 authored over 3 years ago by xiangpin <[email protected]>
use .data of rlang to avoid NOTE during checking

github.com/YuLab-SMU/ggtree - be03314ea4953f5228aab15019ac7e9c00fe5361 authored over 3 years ago by xiangpin <[email protected]>
Merge pull request #382 from brj1/master

added new default tip.order to ggdensitree that is more similar to DensiTree's

github.com/YuLab-SMU/ggtree - 0681b23fe6afb510e5a6041a7cbf50c3b18473e8 authored almost 4 years ago by Guangchuang Yu <[email protected]>
changed `$` to pull

github.com/YuLab-SMU/ggtree - 73d1b6fcc6892e1d546e3fa26d69990e9241ee22 authored almost 4 years ago by brad <brad@BRAD>
added new default tip.order to ggdensitree that is more similar to DensiTree's default tip order

github.com/YuLab-SMU/ggtree - 6eea0640e546ec5ca7f26601906c8fa52fb208a4 authored almost 4 years ago by brad <brad@BRAD>
Merge pull request #379 from xiangpin/master

fix extendto argument for geom_highlight when layout="inward_circular" or "dendrogram"

github.com/YuLab-SMU/ggtree - fd0c2c18199966ffd2026a3f7d24860b65a5b620 authored almost 4 years ago by Guangchuang Yu <[email protected]>
update docs

github.com/YuLab-SMU/ggtree - 7d2d06a80b3d3509675ec186f6070f6871d4d8c4 authored almost 4 years ago by Guangchuang Yu <[email protected]>
fix extendto for reversed x axis

github.com/YuLab-SMU/ggtree - 390b78465172130c6e9645e3a2637471b8dbe750 authored almost 4 years ago by xiangpin <[email protected]>
Merge pull request #366 from xiangpin/master

fix node label for rectangular

github.com/YuLab-SMU/ggtree - 652e1e053a9023b68f0ba29a174b51f1c113f552 authored almost 4 years ago by Guangchuang Yu <[email protected]>
fix node label bug for rectangular

github.com/YuLab-SMU/ggtree - c4c8c1b3396fe28bad60354014f377c6ba977830 authored almost 4 years ago by xiangpin <[email protected]>
v2.5.1

github.com/YuLab-SMU/ggtree - 0acf2bde0b07a5dee9687c895657f7fce6b0b769 authored almost 4 years ago by Guangchuang Yu <[email protected]>
update

github.com/YuLab-SMU/ggtree - 7353eb90030b7d4c33c4d1dd6468d8ea21d5885f authored almost 4 years ago by Guangchuang Yu <[email protected]>
Merge pull request #365 from xiayh17/master

update document of geom_rootpoint()

github.com/YuLab-SMU/ggtree - 197b8d064b37a5b40a3956ce7c82f86f6d6dd23a authored almost 4 years ago by Guangchuang Yu <[email protected]>
update document of geom_rootpoint()

github.com/YuLab-SMU/ggtree - 4f6cedf81138ba5e758bd125722166e4b9f3ceb8 authored almost 4 years ago by xiayh17 <[email protected]>
Merge pull request #362 from xiangpin/master

change default vjust of label to 1 in geom_treescale

github.com/YuLab-SMU/ggtree - 2704799b1865a79f4e204f28aa1722a8e84ad2cd authored almost 4 years ago by Guangchuang Yu <[email protected]>
Merge branch 'utemp'

github.com/YuLab-SMU/ggtree - f98de307597c84afef7b0da1c7c2cac3113d8ad3 authored almost 4 years ago by xiangpin <[email protected]>
default vjust of label to 1

github.com/YuLab-SMU/ggtree - 3a0e6df3f57ef2b0b162fa8e0b20fb001de2848f authored almost 4 years ago by xiangpin <[email protected]>
update news

github.com/YuLab-SMU/ggtree - 78b0528ae4448f550f0741d76806586582533331 authored almost 4 years ago by Guangchuang Yu <[email protected]>
Merge pull request #360 from xiangpin/master

add offset.label and label to geom_treescale

github.com/YuLab-SMU/ggtree - b6dd41ab9592bd28b80b9fb93526b5befab4f847 authored almost 4 years ago by Guangchuang Yu <[email protected]>
Update geom_treescale.R

remove duplicated lines.

github.com/YuLab-SMU/ggtree - ebe98365d4d823df8a3e60425eeddf237f99b7e5 authored almost 4 years ago by Guangchuang Yu <[email protected]>
add offset.label and label to geom_treescale

github.com/YuLab-SMU/ggtree - 4248a3210c1c8bf489057c5613cc02238d94f962 authored about 4 years ago by xiangpin <[email protected]>
Merge pull request #358 from xiangpin/master

fix geom_rootedge to support reversed x

github.com/YuLab-SMU/ggtree - 0ff8f91f318c47699b3789915577393f6033ee13 authored about 4 years ago by Guangchuang Yu <[email protected]>
Merge branch 'utemp'

github.com/YuLab-SMU/ggtree - 17246fac5e429c27e27d330d142ade8ef70a3a00 authored about 4 years ago by xiangpin <[email protected]>
fix geom_rootedge to support reversed x

github.com/YuLab-SMU/ggtree - 7342346e7e455064e2eff60dc82d973164346565 authored about 4 years ago by xiangpin <[email protected]>
Merge pull request #354 from xiangpin/master

fix geom_tiplab2

github.com/YuLab-SMU/ggtree - 2e6e225c075edde982b2bf12d48f116470caa3ab authored about 4 years ago by Guangchuang Yu <[email protected]>
Merge branch 'utemp'

github.com/YuLab-SMU/ggtree - 96fe996159ad61b945e0b2f0a31670fbc41bb9c5 authored about 4 years ago by xiangpin <[email protected]>
fix geom_tiplab2

github.com/YuLab-SMU/ggtree - 0bd7420fe080d87f7e61b7473e3d86714bc1ab88 authored about 4 years ago by xiangpin <[email protected]>