Ecosyste.ms: OpenCollective

An open API service for software projects hosted on Open Collective.

ggtree

tree visualization and annotation
Collective - Host: opensource - https://opencollective.com/ggtree - Code: https://github.com/GuangchuangYu/ggtree

update geom_strip and add nodeid function

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@119674 bc3139a8-6...

github.com/YuLab-SMU/ggtree - 97d22b95a745f9cb9f40ee70092348bfcf02a98e authored over 8 years ago
update geom_strip and add nodeid function

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@119673 bc3139a8-6...

github.com/YuLab-SMU/ggtree - 84e7822836e385c0781926809ce9a9128c096c71 authored over 8 years ago
update geom_strip and add nodeid function

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@119673 b...

github.com/YuLab-SMU/ggtree - ef017f6c0be353263e3230bea874324a1264f1ad authored over 8 years ago
update makefile

github.com/YuLab-SMU/ggtree - 2b921f7467697e96aea4fae3e8cf6560fa708c5d authored over 8 years ago
update docs

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@119523 b...

github.com/YuLab-SMU/ggtree - 8c4ac362663cbcb7b0c3062f8658993519f924fc authored over 8 years ago
update docs

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@119523 bc3139a8-6...

github.com/YuLab-SMU/ggtree - 89105091fb7f4cc8f40f9871aac43b49d4418171 authored over 8 years ago
clean dependencies

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@119521 b...

github.com/YuLab-SMU/ggtree - a90eeffd10e621666f6986eef82cead0d0e44240 authored over 8 years ago
clean dependencies

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@119521 bc3139a8-6...

github.com/YuLab-SMU/ggtree - 27786944b218624a15d019902718b3a949b49ed5 authored over 8 years ago
clean dependencies

github.com/YuLab-SMU/ggtree - 5d995886a4a15e67c739b3a77570d1a378b4945f authored over 8 years ago
remove dependency of EBImage for building & installing ggtree

github.com/YuLab-SMU/ggtree - cb86f50c59346d923fdd59b2836789c83a960dbe authored over 8 years ago
Makefile

github.com/YuLab-SMU/ggtree - 4745254b62c9e229e93410014ef4e4e2797f7000 authored over 8 years ago
url

github.com/YuLab-SMU/ggtree - 47112ea1b802eb5c9473cc80d696accc54160c6a authored over 8 years ago
`%<+%` now work with tbl_df

github.com/YuLab-SMU/ggtree - 509c9bbb5ce57fe2d125572c6096a73b74c55b0d authored over 8 years ago
bug fixed

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@119118 b...

github.com/YuLab-SMU/ggtree - e1396b704cf42493e7d14d35d369d173a29ab601 authored over 8 years ago
bug fixed

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@119118 bc3139a8-6...

github.com/YuLab-SMU/ggtree - f0f7bdb557d94c31c24e108e940c18df9af7fa73 authored over 8 years ago
typo

github.com/YuLab-SMU/ggtree - 93fe2797c32869260e93e98088f289e6a5851c5b authored over 8 years ago
update readme

github.com/YuLab-SMU/ggtree - c0a5c5318b24dfb321ad771f8f69363df4a98058 authored over 8 years ago
update readme

github.com/YuLab-SMU/ggtree - dbc48244ff5c745257915ed611d3cc11985f411d authored over 8 years ago
update docs

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@119011 b...

github.com/YuLab-SMU/ggtree - dbaa7fd25db917655b449491d0ea7144d4f2082a authored over 8 years ago
update docs

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@119011 bc3139a8-6...

github.com/YuLab-SMU/ggtree - 3a0dfc07af92c4b65144d539f22adcfef37442af authored over 8 years ago
update docs

github.com/YuLab-SMU/ggtree - 0427b1d47fb60851118e613fdb836b960ea9a918 authored over 8 years ago
update news

github.com/YuLab-SMU/ggtree - 2121541731dc7535abac0cab9597c9c8f4ea414e authored over 8 years ago
update vignette

github.com/YuLab-SMU/ggtree - 57120277c05b0dae8505a2aff530e35029299dae authored over 8 years ago
identify

github.com/YuLab-SMU/ggtree - c5a283632ed16fca80aabc1719ac26b0ef948bac authored over 8 years ago
identify method for ggtree

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@118985 bc3139a8-6...

github.com/YuLab-SMU/ggtree - 9e9bcff34bb6b65a83c532df71dd6f68c872a605 authored over 8 years ago
identify method for ggtree

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@118985 b...

github.com/YuLab-SMU/ggtree - 27850da1cd61c6ca6d72706c26bd5c50e6eee3fc authored over 8 years ago
update citation info

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@118925 b...

github.com/YuLab-SMU/ggtree - 5bb1376e1be4859f5a1c71f6f191e81bb836f4ee authored over 8 years ago
update citation info

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@118925 bc3139a8-6...

github.com/YuLab-SMU/ggtree - 13e3fd30125b69aff4b714595a57c3ef58e4b778 authored over 8 years ago
version bumpup

github.com/YuLab-SMU/ggtree - d7d83ff3dac62d03610190cc56925be4dba73faf authored over 8 years ago
update citation info

github.com/YuLab-SMU/ggtree - 72271a6e7f6641724144e75b27c17100ccf98677 authored over 8 years ago
Merge pull request #64 from jsilve24/feature_geom_balance

Feature geom_balance

github.com/YuLab-SMU/ggtree - e64dc885d2b2356b0481035378efdcfa5e48fed9 authored over 8 years ago
geom_balance now warns if called on tip or multi

geom_balance now gives warning and does not plot balance if called on a node that is a tip or ha...

github.com/YuLab-SMU/ggtree - 15c04a9d04b5ede40c098366f3d2867f7c6aaacf authored over 8 years ago
Added geom_balance and updated vignette

+ Added geom_balance - for highlighting neighboring clades.
+ Updated treeAnnotation vignette wi...

github.com/YuLab-SMU/ggtree - 0dfaa19af4ed07b9027496cf5d2806b03d047b4d authored over 8 years ago
update geom_tiplab2

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@118763 b...

github.com/YuLab-SMU/ggtree - 5e6f5a80a4192e9d3137c62d625ee26cd1ee265c authored over 8 years ago
update geom_tiplab2

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@118763 bc3139a8-6...

github.com/YuLab-SMU/ggtree - 4a860280441ac0a76db79dc060dbc5bfaeebf83c authored over 8 years ago
update geom_tiplab2 according to angle change introduced by open_tree <2016-06-20, Mon>

github.com/YuLab-SMU/ggtree - 923f397aa96ca75ab0932df899253531d09124ce authored over 8 years ago
bug fixed

github.com/YuLab-SMU/ggtree - 7d41d47b707a19550156271ac5695e9e7bca4118 authored over 8 years ago
fixed bug

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@118285 b...

github.com/YuLab-SMU/ggtree - 15d04b29cf065ae56166c78522f675f5f4219ea1 authored over 8 years ago
fixed bug

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@118285 bc3139a8-6...

github.com/YuLab-SMU/ggtree - 1a6bb3ec002a607df34e643f685ab5be8679f7c1 authored over 8 years ago
update url

github.com/YuLab-SMU/ggtree - 108330dc33cc04d079c07acd249f67d1b178741a authored over 8 years ago
:bug: bug fixed in collapse, now work with collapse a clade that contain a subclade that was already collapsed

github.com/YuLab-SMU/ggtree - 460673bacd77cfb9d45c5bb331df2542b16c95ee authored over 8 years ago
bug fixed in collapse, now work with collapse a clade that contain a subclade that was already collapsed

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@118094 bc3139a8-6...

github.com/YuLab-SMU/ggtree - 57e5e2f61129c35e6f90a45fada30821d40ba450 authored over 8 years ago
bug fixed in collapse, now work with collapse a clade that contain a subclade that was already collapsed

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@118094 b...

github.com/YuLab-SMU/ggtree - b1e524c4f3b048e5b8ede37b3f61976bbcb9a836 authored over 8 years ago
version 1.5.5

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@118092 b...

github.com/YuLab-SMU/ggtree - 85777d7b48988819a4b5e431dacc46d9ba5f6827 authored over 8 years ago
version 1.5.5

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@118092 bc3139a8-6...

github.com/YuLab-SMU/ggtree - 328fdc0641aa0782207bb1ebe8e1e80ac7a519c9 authored over 8 years ago
:bug: bug fixed if time-scaled tree extend into the BCE.

github.com/YuLab-SMU/ggtree - ba6cf2b26de51895ff7c7fac9fab2ae8fc723233 authored over 8 years ago
reroot method for raxml object <2016-05-22, Sun>

github.com/YuLab-SMU/ggtree - 00eff1df5ff8ea90cedf3b392c152842ecd126db authored over 8 years ago
bug fixed in scaleClade, now y positions are (hopefully) always correct. <2016-05-20, Fri>

github.com/YuLab-SMU/ggtree - 2608ad08690ef2fc42b6d04729fac445ba8de909 authored over 8 years ago
bug fixed in scaleClade, now y positions are (hopefully) always correct. <2016-05-20, Fri>

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@117703 bc3139a8-6...

github.com/YuLab-SMU/ggtree - 77debaae1c9106193314c258646d391c795f4e32 authored over 8 years ago
bug fixed in scaleClade, now y positions are (hopefully) always correct. <2016-05-20, Fri>

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@117703 b...

github.com/YuLab-SMU/ggtree - e69e5f4f6d9423ecd2736d583fdefc123183351f authored over 8 years ago
bug fixed in collapse

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@117702 bc3139a8-6...

github.com/YuLab-SMU/ggtree - 140b3239870d73526b99a5f30a905a6c638fa193 authored over 8 years ago
bug fixed in collapse

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@117702 b...

github.com/YuLab-SMU/ggtree - 69b0d0e98b91f12c1b56b93e2722d0cbbc29dbad authored over 8 years ago
bug fixed in collapse

github.com/YuLab-SMU/ggtree - 93665f7702b7c5f77b8d9594874f4be6d3959f89 authored over 8 years ago
byte compiler

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@117653 bc3139a8-6...

github.com/YuLab-SMU/ggtree - bb14ac03486ad0004bbedf8477b02efb1555a3f9 authored over 8 years ago
byte compiler

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@117653 b...

github.com/YuLab-SMU/ggtree - ded558ebfccae134a2fd39f458d2aa840253c5e0 authored over 8 years ago
:boom: use byte compiler

github.com/YuLab-SMU/ggtree - cb1e3de9080b8bc027e9c853405506ad9b02a630 authored over 8 years ago
change any(is.na()) to anyNA() which is more efficient

github.com/YuLab-SMU/ggtree - f3ac32ac1de20ab702acb27a3ebe959b0b5a5728 authored over 8 years ago
version bump by Bioconductor

github.com/YuLab-SMU/ggtree - 8a06a2dab5bed52d36e4cbb2c99d11320f1803f3 authored over 8 years ago
update news

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@117569 b...

github.com/YuLab-SMU/ggtree - 55bbcddb14ab36cfc101d46c6299a63e6b9beaf2 authored over 8 years ago
update news

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@117569 bc3139a8-6...

github.com/YuLab-SMU/ggtree - e3e4260e8ed6ae5a37cb1fcfa098f8f6641d3f4d authored over 8 years ago
Version bump to trigger package rebuilding now that purl()'ing issue

has been correctly identified. knitr does not create purl()'ed
(Stangle equivalent) .R files if _...

github.com/YuLab-SMU/ggtree - 0f01a3cf8624d7b0d80671bc3fa2adf752e9470d authored over 8 years ago
Version bump to trigger package rebuilding now that purl()'ing issue

has been correctly identified. knitr does not create purl()'ed
(Stangle equivalent) .R files if _...

github.com/YuLab-SMU/ggtree - 559548c66b51253e8ccb983d353385838a81f106 authored over 8 years ago
:orange_book: update vignettes

github.com/YuLab-SMU/ggtree - e402825f9885582cfb1ba3491ba3a176cbe5c129 authored over 8 years ago
update vignettes

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@117445 bc3139a8-6...

github.com/YuLab-SMU/ggtree - 6894f605edc48d9935b2b140d88188118fd08a3f authored over 8 years ago
update vignettes

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@117445 b...

github.com/YuLab-SMU/ggtree - 10f32b5bcf236d4b7af8aa19afbe9ef89d4bf760 authored over 8 years ago
open_tree & rotate_tree

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@117331 bc3139a8-6...

github.com/YuLab-SMU/ggtree - fded823a2c3e4fea1a6e2fb831932a8e4d1a301d authored over 8 years ago
open_tree & rotate_tree

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@117331 b...

github.com/YuLab-SMU/ggtree - cf039511cad6331f5aee38aaa54f4b93006205ad authored over 8 years ago
open_tree & rotate_tree

github.com/YuLab-SMU/ggtree - 298d9f93d9144c1f2916ab387b583c52c75cf37a authored over 8 years ago
fixed R check

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@117330 bc3139a8-6...

github.com/YuLab-SMU/ggtree - edd8312111f47ec185dcb985851e79ccac83d303 authored over 8 years ago
fixed R check

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@117330 b...

github.com/YuLab-SMU/ggtree - 4f8bbf4fc128d6326cc1bcb1667451bc608e2cc2 authored over 8 years ago
:blue_book: update vignettes

github.com/YuLab-SMU/ggtree - f7b93370937f83631aa497b90501e7c19443b8a3 authored over 8 years ago
support MCC trees

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@117329 bc3139a8-6...

github.com/YuLab-SMU/ggtree - 47fa1dcf4d02e1104f0739ad8ea4e557804c2a91 authored over 8 years ago
support MCC trees

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@117329 b...

github.com/YuLab-SMU/ggtree - 3e0a61f10082531db2e824951ca7bca0b6be5242 authored over 8 years ago
support MCC trees

github.com/YuLab-SMU/ggtree - 4d836128f418c86a63796fd18e13bf62fd0c2b56 authored over 8 years ago
update vignette

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@117326 bc3139a8-6...

github.com/YuLab-SMU/ggtree - 177a5b7653e7bbd5442b1c59c0d05f6859352154 authored over 8 years ago
update vignette

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@117326 b...

github.com/YuLab-SMU/ggtree - 98e51b966a96f2ddc90bae81bde74925134a0698 authored over 8 years ago
update vignette

github.com/YuLab-SMU/ggtree - 4c64399fe7d39b3266114355d09eed8f8272241b authored over 8 years ago
Bump version of all packages that use knitr for vignettes.

This is because of an issue (now fixed) in knitr which failed to
create purl()'ed R files from v...

github.com/YuLab-SMU/ggtree - 51eec4721595c274c24dc4df2f1fdf40700cb1a5 authored over 8 years ago
Bump version of all packages that use knitr for vignettes.

This is because of an issue (now fixed) in knitr which failed to
create purl()'ed R files from v...

github.com/YuLab-SMU/ggtree - bdd0ffda0f0103edb13e247c39f2ed82bf1e41c9 authored over 8 years ago
update vignettes

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@117287 bc3139a8-6...

github.com/YuLab-SMU/ggtree - 17f16a4b506121ddc4cfa865c585b1ea17668c4c authored over 8 years ago
update vignettes

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@117287 b...

github.com/YuLab-SMU/ggtree - 892bdd326412b89025df84647923f2a03ad62263 authored over 8 years ago
add example of integrate user's data using phylo4d in treeAnnotation vignette

github.com/YuLab-SMU/ggtree - afc0320468dba3df666227d560dbe5c6f0fa4622 authored over 8 years ago
update geom_hilight

github.com/YuLab-SMU/ggtree - 2f2bc726aa949007b9ede933f66f148c96b12689 authored over 8 years ago
update geom_hilight

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@117273 bc3139a8-6...

github.com/YuLab-SMU/ggtree - 1c42aaf29a3c566ffe85676a5d9461df88f4352e authored over 8 years ago
update geom_hilight

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@117273 b...

github.com/YuLab-SMU/ggtree - 1949a7f467dd874eff82d77730c87851f1a193da authored over 8 years ago
more accurate ylim & angle for circular layout <2016-05-10, Tue>

github.com/YuLab-SMU/ggtree - 3e9ff99520e6f68d9e504c2af6646c36271f5170 authored over 8 years ago
more accurate ylim & angle for circular layout <2016-05-10, Tue>

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@117270 b...

github.com/YuLab-SMU/ggtree - fedfaec93d6e7faf7db5c78857949216e96e726c authored over 8 years ago
more accurate ylim & angle for circular layout <2016-05-10, Tue>

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@117270 bc3139a8-6...

github.com/YuLab-SMU/ggtree - 5c79784c5b5495761b26a654ad2525b7ee84bc32 authored over 8 years ago
supports phylo4d

github.com/YuLab-SMU/ggtree - dc3ff157406622cd61b5a4abfcea2de97855340e authored over 8 years ago
supports phylo4d

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@117269 b...

github.com/YuLab-SMU/ggtree - 266b20f1c29d20a0a91fcd328da4f8728203ef6d authored over 8 years ago
supports phylo4d

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@117269 bc3139a8-6...

github.com/YuLab-SMU/ggtree - 9d991643a22662921b7b43b078c793959938f3fa authored over 8 years ago
1.5.1: geom_strip, update vignettes

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@117266 b...

github.com/YuLab-SMU/ggtree - 3ba777c5a7f69e104128328b3a33ca9cd960ae7d authored over 8 years ago
1.5.1: geom_strip, update vignettes

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@117266 bc3139a8-6...

github.com/YuLab-SMU/ggtree - 0f93c46a129db0cadf5f48b159dbe0835288cf4e authored over 8 years ago
ggtree utilities

github.com/YuLab-SMU/ggtree - 58fcfe920541b9343604582d7e4a3f776605ed88 authored over 8 years ago
update taxa2node

github.com/YuLab-SMU/ggtree - 9f6836dd1364f86d9db6f6e230206b6e56cf677f authored over 8 years ago
update news

github.com/YuLab-SMU/ggtree - 5be6f488d4d4b08cbbcaf023aa9000772eb48d29 authored over 8 years ago
Merge pull request #57 from jsilve24/fix_gheatmap

Fix gheatmap with single column

github.com/YuLab-SMU/ggtree - 317708200f37cbb8a0d0ff27b7c98ebb508c892b authored over 8 years ago
geom_strip

github.com/YuLab-SMU/ggtree - df861b513c9ebfb5ff0cb19e985e15b55dbf0906 authored over 8 years ago
Fix gheatmap with single column

+ Fix for gheatmap, now allows plotting a heatmap consisting of a single column (while respectin...

github.com/YuLab-SMU/ggtree - 8eb453585aa7c1d6826c16871cf7a9b260b55442 authored over 8 years ago
bioc3.3

github.com/YuLab-SMU/ggtree - 2e3244f3ddf4172aab6635c73a6efabbbea3f8e0 authored over 8 years ago