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GeomScale

Open-source development of scalable algorithms for geometric statistics
Collective - Host: opensource - https://opencollective.com/geomscale - Website: https://geomscale.github.io - Code: https://github.com/geomscale

update software

github.com/GeomScale/geomscale.github.io - 390f56011c00d99d8a3fc8a63e5e7264e87f66da authored over 1 year ago by Apostolos Chalkis <[email protected]>
update gsoc list

github.com/GeomScale/geomscale.github.io - ebf8bfdff805ce9500866bf0759daf604535224b authored over 1 year ago by Apostolos Chalkis <[email protected]>
update publications and people

github.com/GeomScale/geomscale.github.io - d491eb1a5d58901c3ade0a3b35756a8869efe0a2 authored over 1 year ago by Apostolos Chalkis <[email protected]>
Initial commit

github.com/GeomScale/Rvolesti - 0dbf541c07c96efe51f90ce31384d775806933d3 authored over 1 year ago by Vissarion Fisikopoulos <[email protected]>
Bump nokogiri from 1.13.10 to 1.14.3 (#24)

Bumps [nokogiri](https://github.com/sparklemotion/nokogiri) from 1.13.10 to 1.14.3.
- [Release ...

github.com/GeomScale/geomscale.github.io - 00477cbf896a160490f0d1addee91c9376d2e037 authored over 1 year ago by dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Adding GeomScale tutorial GSoD applcation

github.com/GeomScale/geomscale.github.io - e620c0ea8bbd40bd49be8dd555adfbd3a4ebd66e authored over 1 year ago by Vissarion Fisikopoulos <[email protected]>
fix magic command denoter; issue 60 (#63)

github.com/GeomScale/dingo - d9bdef9507849edd863763ca854d8d35ad3f0dc8 authored over 1 year ago by Haris Zafeiropoulos <[email protected]>
Fix poetry version 1.3.2 in actions. (#62)

github.com/GeomScale/dingo - c32ce986cbcb12e47d8c432d3756644bf57ac8cf authored over 1 year ago by Vissarion Fisikopoulos <[email protected]>
update colab; fix #60 (#61)

github.com/GeomScale/dingo - 1b6d598885f6eaf12ad21eaad5341bba707c5863 authored over 1 year ago by Haris Zafeiropoulos <[email protected]>
Merge pull request #265 from vissarion/feature/ci_examples

Enable github actions to build examples

github.com/GeomScale/volesti - ac68063c9d8616d2b964fdec803a9c5b147e3fa6 authored over 1 year ago by Vissarion Fisikopoulos <[email protected]>
Updating documentation (#261)

Adding WSL and MKL build instructions.

github.com/GeomScale/volesti - 9d495d6768de9b0f5ddc24698bc99b29f8da1b78 authored over 1 year ago by Soumya Tarafder <[email protected]>
Fix ambiguous call to fix function by renaming volesti's diagnostic function. (#263)

github.com/GeomScale/volesti - 553cf553a1f3e313aee315bf4e5d347c4bf469df authored over 1 year ago by Vissarion Fisikopoulos <[email protected]>
Enable github actions to build examples. Avoid passing a polytope as a const reference.

github.com/GeomScale/volesti - 2b876b256a919446e08ccda260a68dfc5dbc26be authored over 1 year ago by Vissarion Fisikopoulos <[email protected]>
Edits on copula illustration and export (#58)

* export and edits on copula function

* edit camera on copula

* kaleido dependency added
...

github.com/GeomScale/dingo - 3104cbd214fa7200a7763da6f446445ec2160147 authored over 1 year ago by Haris Zafeiropoulos <[email protected]>
Create README.md

github.com/GeomScale/gsoc23 - df7c616d26d9f2bdd487f2a1e9ff2dd247bcc41e authored over 1 year ago by Vissarion Fisikopoulos <[email protected]>
Bump future from 0.18.2 to 0.18.3 (#56)

Bumps [future](https://github.com/PythonCharmers/python-future) from 0.18.2 to 0.18.3.
- [Relea...

github.com/GeomScale/dingo - 12785fbcc0c43d851c55f3d961e4413c167d71da authored over 1 year ago by dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Update README.md

github.com/GeomScale/dingo - 31e283bc0fcbaee25952ff1d9e54ee41af99dc99 authored over 1 year ago by Vissarion Fisikopoulos <[email protected]>
Move the documentation to readme (#54)

* move the documentation to readme

* fix readme

* minor improvement in readme

* minor i...

github.com/GeomScale/dingo - 3f98892ee7fe3bce9b5f437ed0a557e787c5716c authored over 1 year ago by Apostolos Chalkis <[email protected]>
Expose rounding methods (#53)

* expose rounding methods

* fix minor bug in function declaration

* remove unused comments...

github.com/GeomScale/dingo - c82849f92df90762bf37d8c0621392dd3b515872 authored over 1 year ago by Apostolos Chalkis <[email protected]>
Bump activesupport from 6.0.3.7 to 6.0.6.1 (#23)

Bumps [activesupport](https://github.com/rails/rails) from 6.0.3.7 to 6.0.6.1.
- [Release notes...

github.com/GeomScale/geomscale.github.io - d80bde6c2145078d3816a932bf23e352f93cfe78 authored over 1 year ago by dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Fix CRAN badges in README (#259)

github.com/GeomScale/volesti - 423bbcfc9851b43acd62032c732d633f0d6cb01e authored almost 2 years ago by Vissarion Fisikopoulos <[email protected]>
Expose uniform random walks (#40)

* fix gen_samples breaking point

* add to polytope sampler the option to not use mmcs

* im...

github.com/GeomScale/dingo - aeef11141af844a1eb2074097a22214f4a99d53a authored almost 2 years ago by Kostas-Pallikaris <[email protected]>
implement copula illustration in dingo pipeline (#52)

* implement copula illustration in dingo pipeline

* add documentation comments in the new fun...

github.com/GeomScale/dingo - dc929d782ab3daa574da07bfc8fe907c6ffa691d authored almost 2 years ago by Apostolos Chalkis <[email protected]>
Load models (#50)

* minor edits

* minor edits

* fix fba - fva

* fixed refs

* build model from sbml fil...

github.com/GeomScale/dingo - 7e86be3f8aaf0046b178c6821b3cb718b0286551 authored almost 2 years ago by Haris Zafeiropoulos <[email protected]>
Merge pull request #51 from vissarion/add_cobrapy

Add cobra package as a dependence.

github.com/GeomScale/dingo - 2893dfa4e74e101f9df659a3c56002f8050898df authored almost 2 years ago by Vissarion Fisikopoulos <[email protected]>
Add cobra package.

github.com/GeomScale/dingo - b6bccc43725f24ee45b8c8cbf739a6dd146bcf4d authored almost 2 years ago by Vissarion Fisikopoulos <[email protected]>
Merge pull request #49 from hariszaf/dingo_tutorial

reorder Jupyter notebook sections and minor edits

github.com/GeomScale/dingo - 1f1bbb7547c67c2e80fd8d3b6c82d15952bf8dbf authored almost 2 years ago by Vissarion Fisikopoulos <[email protected]>
reorder sections and minor edits

github.com/GeomScale/dingo - 37e2952b573f130ba3766f663f44098f7fd71344 authored almost 2 years ago by hariszaf <[email protected]>
Bump nokogiri from 1.13.9 to 1.13.10 (#22)

Bumps [nokogiri](https://github.com/sparklemotion/nokogiri) from 1.13.9 to 1.13.10.
- [Release ...

github.com/GeomScale/geomscale.github.io - fa18140af07649f6f47d874822e29d86f7cd4d93 authored almost 2 years ago by dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Update CRAN badges (#255)

Issue https://github.com/GeomScale/volesti/issues/254

github.com/GeomScale/volesti - 6b359f424f9f3075dab7737c6630267aa3df3257 authored almost 2 years ago by Vissarion Fisikopoulos <[email protected]>
Merge pull request #48 from vissarion/fix/ci

Update poetry installation CI command

github.com/GeomScale/dingo - cdb5245d3f07c73bf75bf8bbf39895a5c9c0d4e1 authored almost 2 years ago by Vissarion Fisikopoulos <[email protected]>
Update poetry installation CI command from get-poetry.py to install.python-poetry.org

github.com/GeomScale/dingo - 0bbc1e1a77b3de36250cde11d356b6afa13789e3 authored almost 2 years ago by Vissarion Fisikopoulos <[email protected]>
Basic c++ documentation addition (#253)

github.com/GeomScale/volesti - 82d138340256a2b8a2b7f98e648e247350a72d8f authored almost 2 years ago by AlexManochis <[email protected]>
Update README.md (#252)

github.com/GeomScale/volesti - fbc420612a901bf3aaa44bd8fa80e48f40128f40 authored almost 2 years ago by Vissarion Fisikopoulos <[email protected]>
Add rng parameter for MC integration + fix dimension bug (#251)

* Add rng parameter for MC integration + fix dimension bug

* Fix parameters order

* Adjust...

github.com/GeomScale/volesti - ba0e697a414bda101c8010676cc929131da2f064 authored almost 2 years ago by Gabriele Masina <[email protected]>
Merge pull request #249 from vissarion/fix/doctest

Fix doctest compilation error and update actions

github.com/GeomScale/volesti - 7cdeae2a041da36158d25053646f1c28e9578eb5 authored almost 2 years ago by Vissarion Fisikopoulos <[email protected]>
Add documentation actions and fix doc issues (#248)

github.com/GeomScale/volesti - bf9c232983274e85171a60b383355ddf258c15fe authored almost 2 years ago by Vissarion Fisikopoulos <[email protected]>
Feature/sampling correlation matrices (#233)

* first commit

* draft

* draft

* update some code

* finish Point_matrix.cpp

* cha...

github.com/GeomScale/volesti - 130a2dff0dc03aaa0ec8eb114517d5b08efa5679 authored almost 2 years ago by Huu Phuoc Le <[email protected]>
Constrained Riemannian Hamiltonian Monte Carlo Walk (#239)

github.com/GeomScale/volesti - 774abdb3681857bbd4033a155fb18ae455ae16b7 authored almost 2 years ago by iakoviid <[email protected]>
Merge pull request #247 from vissarion/fix/R_actions

Fix R actions.

github.com/GeomScale/volesti - 55e6371bb59f8b47fe9f4fb9ea0fd8b8eef5e76c authored almost 2 years ago by Vissarion Fisikopoulos <[email protected]>
Fix link to lp_solve

github.com/GeomScale/volesti - b94484eb52a57738cae5413635f74b46faf10df2 authored almost 2 years ago by Vissarion Fisikopoulos <[email protected]>
Fix R actions.

github.com/GeomScale/volesti - 16717d3690fbbae6b2927cc36c6107accab3e7fa authored almost 2 years ago by Vissarion Fisikopoulos <[email protected]>
Disactivate g++13 and clang++-15 from Ubuntu 22 actions until they become available.

github.com/GeomScale/volesti - 83272eb965a799743497dc63d0900498322cc281 authored almost 2 years ago by Vissarion Fisikopoulos <[email protected]>
Update ubuntu-based github actions.

github.com/GeomScale/volesti - 9fbc827d451331f7303bfa35c88c69a74b3e27df authored almost 2 years ago by Vissarion Fisikopoulos <[email protected]>
Update doctest to version 2.4.9

github.com/GeomScale/volesti - 6733390d9d05b847389eda1e9a46069eb3cd2430 authored almost 2 years ago by Vissarion Fisikopoulos <[email protected]>
Bump nokogiri from 1.13.6 to 1.13.9 (#21)

Bumps [nokogiri](https://github.com/sparklemotion/nokogiri) from 1.13.6 to 1.13.9.
- [Release n...

github.com/GeomScale/geomscale.github.io - de6b335a861f24fce3ed7eb4d775f27de85976d5 authored almost 2 years ago by dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Move updated tutorial to tutorials folder and copyedit (#38)

* Move updated tutorial to tutorials folder

* Copyedit tutorial

* Delete reference to comm...

github.com/GeomScale/dingo - 03d6e65a1278753bd879ea24f6512e7e8b95af93 authored about 2 years ago by dymil <[email protected]>
Constrained Riemannian Hamiltonian Monte Carlo preparation (#238)

github.com/GeomScale/volesti - 38f6b34bae2599fd83455a7600e3acbc32ddd189 authored about 2 years ago by iakoviid <[email protected]>
Merge pull request #235 from vissarion/fix/compute_diameter

Move compute_diameter functions in one place and fix R-CMD-check-ubuntu

github.com/GeomScale/volesti - b05d574a05b7a867cb72f80c7a1531d433df28c7 authored about 2 years ago by Vissarion Fisikopoulos <[email protected]>
Fix build issues related to some examples. (#237)

* update README.md and Cmakefile

* fix errors

* Cmake fix for test

github.com/GeomScale/volesti - d838b4388fffebc3c912506d080008c669f1946d authored about 2 years ago by zhanggiene <[email protected]>
Bump tzinfo from 1.2.9 to 1.2.10 (#20)

Bumps [tzinfo](https://github.com/tzinfo/tzinfo) from 1.2.9 to 1.2.10.
- [Release notes](https:...

github.com/GeomScale/geomscale.github.io - fa520e386dc7e2484b40b731a06bf19e0eb66a15 authored about 2 years ago by dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Fix overflow edge case in sequence of balls volume method (#228)

* Fix rnum=0 causing integer overflow in SoB volume

rnum-1 is passed into RandomPointGenerato...

github.com/GeomScale/volesti - cc8e5b05978210580fcda45a02edceba5a931304 authored over 2 years ago by dymil <[email protected]>
Fix github actions R-CMD-check-ubuntu issue with devtools.

github.com/GeomScale/volesti - b2e1d7632a78b96371f97da62efd46dad2aa9b53 authored over 2 years ago by Vissarion Fisikopoulos <[email protected]>
Move compute_diameter functions in one place.

github.com/GeomScale/volesti - 3a1aaddd8c193f51a4d94bff5c329b779c16e5f5 authored over 2 years ago by Vissarion Fisikopoulos <[email protected]>
Update mention of unit tests in main README (#39)

tests/unit_tests.py was deleted, so instead instruct the user to run the individual tests.

github.com/GeomScale/dingo - aba7913a0ec6841f02014bdacb6c98c4bbfb97a8 authored over 2 years ago by dymil <[email protected]>
Make changes to code style (#37)

* Condense conditionals to boolean expression

* Delete overridden C++ bool import

* Use bi...

github.com/GeomScale/dingo - b7c3ffb14c06ecf7d8257c7972eb255508acfff1 authored over 2 years ago by dymil <[email protected]>
Fix logo link in documentation and add docs badge in readme.

github.com/GeomScale/volesti - ce20ae8c03cddf9b987d111994d3ae7b1a3608c2 authored over 2 years ago by Vissarion Fisikopoulos <[email protected]>
Merge pull request #232 from vissarion/docs_clean

Create volesti documentation structure

github.com/GeomScale/volesti - 361f9e9932026732de786ceb0b0339c8f1bb5a8d authored over 2 years ago by Vissarion Fisikopoulos <[email protected]>
Enable github actions for pull requests and activate more tests

github.com/GeomScale/dingo - 41a89df84df5700ee9ddea87ea058be5a2188320 authored over 2 years ago by Vissarion Fisikopoulos <[email protected]>
Add tutorials in doc

github.com/GeomScale/volesti - ae68bb425624ba988c068bd9dfb7b4a07d7a1266 authored over 2 years ago by Vissarion Fisikopoulos <[email protected]>
Draft use-as-example documentation for the Hpolytope class.

github.com/GeomScale/volesti - b4b1985be976e3708e1df5e9e887babac7f1c0c1 authored over 2 years ago by Vissarion Fisikopoulos <[email protected]>
Enhance tutorials, remove duplicated files and update links

github.com/GeomScale/volesti - 7cd5b9459694115cae3d901afb73dd93cfa16095 authored over 2 years ago by Vissarion Fisikopoulos <[email protected]>
Add examples and installation guides in documentation.

github.com/GeomScale/volesti - 838f0d6e3fbf305b0eda2d8ac628f24f217bad56 authored over 2 years ago by Vissarion Fisikopoulos <[email protected]>
Change structure in documentation and add yaml file.

github.com/GeomScale/volesti - f81aa5438626d1eefa728141c15b3e67c3af5928 authored over 2 years ago by Vissarion Fisikopoulos <[email protected]>
Add index.rst in documentation tree.

github.com/GeomScale/volesti - 91fe2b4e041fafc37ba5cc4bb9d3781d5cef4695 authored over 2 years ago by Vissarion Fisikopoulos <[email protected]>
Sphinx system requirements

github.com/GeomScale/volesti - 9f1b8ad43bad0f4b2982f75ffaac0f9408efd3b7 authored over 2 years ago by Vissarion Fisikopoulos <[email protected]>
Add intial doxygen/sphynx/breathe documentation

github.com/GeomScale/volesti - 11b1d9ea2785af33b2ed36bb4b65f47ee909e56d authored over 2 years ago by Vissarion Fisikopoulos <[email protected]>
Move logo to new directory under docs

github.com/GeomScale/volesti - bae9f843eaa3830fde0c2f4d4b1294e0389d6451 authored over 2 years ago by Vissarion Fisikopoulos <[email protected]>
Update README with rtd documentation link

github.com/GeomScale/volesti - eab33a148a8d8b0837262ec1117de18bdd432a20 authored over 2 years ago by Vissarion Fisikopoulos <[email protected]>
Remove sitemap and test

github.com/GeomScale/volesti - 1513e9cb2755bb9bbe98c2f0c92cdca42152deb4 authored over 2 years ago by Vissarion Fisikopoulos <[email protected]>
Delete redundant .vscode in .gitignore (#231)

github.com/GeomScale/volesti - 0287c076b2c57dfe90d59ecdf9b5625d87c0e816 authored over 2 years ago by dymil <[email protected]>
Fix undefined behavior in Hpolytope method is_inner_point_nan_inf (#224)

Return false if no NaNs or infs are found, because flowing off the end of a non-void (non-corout...

github.com/GeomScale/volesti - 94eee7e5e864cb21656f5c98dd28f4b64b480fb5 authored over 2 years ago by dymil <[email protected]>
Copyedit main README + comments in volestipy.pyx (#36)

* Copyedit comments in volestipy.pyx

* Copyedit main README

github.com/GeomScale/dingo - 24e1ac7c3c6857969b98d2e5764a95b052a55835 authored over 2 years ago by dymil <[email protected]>
Fix warning about missing enumeration types in switch (Rcpp). (#222)

github.com/GeomScale/volesti - 59cd27e2ee05afb13a65b17b30bd4e3adbc29f4f authored over 2 years ago by Vissarion Fisikopoulos <[email protected]>
Update poetry dependencies

github.com/GeomScale/dingo - ec4228bb685bf079e99bf7516d17918860efc047 authored over 2 years ago by Vissarion Fisikopoulos <[email protected]>
Bump numpy from 1.21.0 to 1.22.0 in /examples/logconcave (#221)

Bumps [numpy](https://github.com/numpy/numpy) from 1.21.0 to 1.22.0.
- [Release notes](https://...

github.com/GeomScale/volesti - 385c8704ac7d8dc6308d294ac8ef7baa2767e829 authored over 2 years ago by dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Bump nokogiri from 1.13.5 to 1.13.6 (#18)

Bumps [nokogiri](https://github.com/sparklemotion/nokogiri) from 1.13.5 to 1.13.6.
- [Release n...

github.com/GeomScale/geomscale.github.io - fc81eda6679361841e4c0f3853e79a4462494602 authored over 2 years ago by dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Fix typo in README (#35)

github.com/GeomScale/dingo - 66e1cc7184776b8a2296dc21d83debd3eb2a552f authored over 2 years ago by dymil <[email protected]>
Bump nokogiri from 1.13.2 to 1.13.5 (#17)

Bumps [nokogiri](https://github.com/sparklemotion/nokogiri) from 1.13.2 to 1.13.5.
- [Release n...

github.com/GeomScale/geomscale.github.io - 7db8bb704ef202507f67805217fecfc3891f2b7c authored over 2 years ago by dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Update 2021-03-26-GSoD-application.md

github.com/GeomScale/geomscale.github.io - d5e84a5e35bcfcdf5cd676bc280d03929e2373f5 authored over 2 years ago by Vissarion Fisikopoulos <[email protected]>
Bump nokogiri from 1.12.5 to 1.13.2 (#15)

Bumps [nokogiri](https://github.com/sparklemotion/nokogiri) from 1.12.5 to 1.13.2.
- [Release n...

github.com/GeomScale/geomscale.github.io - 010a81baac86fe1e47dac282f9077e85068d7eed authored over 2 years ago by dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Bump numpy from 1.19.2 to 1.21.0 in /examples/logconcave (#208)

Bumps [numpy](https://github.com/numpy/numpy) from 1.19.2 to 1.21.0.
- [Release notes](https://...

github.com/GeomScale/volesti - 2e6572d9ba757de311f2a55b09abf8f9c02e932e authored over 2 years ago by dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Remove directory volestipy (Breaking change. Only package dingo could be used by Python users, #207)

* remove directory volestipy

* remove python documentation from readme

* update the readme...

github.com/GeomScale/volesti - bdb8cb929b28982e1d5db3311a2a19bfb8b7a9e9 authored over 2 years ago by Apostolos Chalkis <[email protected]>
update the readme

github.com/GeomScale/volesti - 73608a4667ed8fe495a9fbdcb141a14c3e441f1b authored over 2 years ago by TolisChal <[email protected]>
Gaussian accelerated billiard walk for volume cooling ellipsoids algorithm. (#195)

* add _deps to gitignore

* add initial version of GaBW

* add example for comparing billiar...

github.com/GeomScale/volesti - 0d11c6828eea8011efbd32f5eb61277098171893 authored over 2 years ago by Vaibhav Thakkar <[email protected]>
Volume approximation for spectrahedra (#173)

* implement boundary oracles for line intersection

* enable spectra as the default solver

...

github.com/GeomScale/volesti - 45dd96ddb70bbdbf3257a9087fc7bdf679c0a32c authored over 2 years ago by AlexManochis <[email protected]>
Parallel version of random walks (#172)

* implement random directions Hit-and-Run (multithread)

* implement Coordinate directions Hit...

github.com/GeomScale/volesti - b60365def62b6f90d4d8be8889decb2b236d2b80 authored over 2 years ago by Kostas-Pallikaris <[email protected]>
Implement biomass sampling experiments for metabolic networks in C++ (#197)

* implement biomass sampling experiments

* modify circleci/config.yml

* fix bug in log-con...

github.com/GeomScale/volesti - 6591ae8c20e4610094a41616ed29b4cc0fdaede0 authored over 2 years ago by Apostolos Chalkis <[email protected]>
Create README.md

github.com/GeomScale/gsoc22 - f1b4ca3dab521be990a278b7a528f55bb80235ab authored over 2 years ago by Vissarion Fisikopoulos <[email protected]>
Fix metric reporting (#196)

Fix metric reporting in exponential sampling tests.

github.com/GeomScale/volesti - f9d3414716552a594753d79f1bd4fc4e09f891a5 authored almost 3 years ago by Marios Papachristou <[email protected]>
add logo

github.com/GeomScale/dingo - fa5b5b38f14bbf247906b8ca235facb2dab89486 authored almost 3 years ago by TolisChal <[email protected]>
ReHMC support for spectrahedra and general convex bodies with refactored Spectrahedra classes (#194)

* Squash commits into one

* Minor changes

* Remove merge blocks

* Disable MKL in github...

github.com/GeomScale/volesti - 584af91869fb160b8a4a67f1f3c3ffc91dd11e33 authored almost 3 years ago by Marios Papachristou <[email protected]>