Blosc commits | Ecosyste.ms: OpenCollective

hdf5_to_cat2: Put Blosc2 HDF5 filter identifier in variable

github.com/ironArray/Caterva2 - ea002f088f17277ff6ef03b083c852094a4fd87f authored 11 months ago

hdf5_to_cat2: Fix way of copying chunks to empty Blosc2 array

The empty array already had chunks which were pushed back by the insertion
operation, so they we...

github.com/ironArray/Caterva2 - c57abe22f70e55eb8d1281f44f22fb4924e39706 authored 11 months ago

Remove a confusing statement

github.com/Blosc/python-blosc2 - 8eacfde5070a1f0c403d82d8065b412290fc460d authored 11 months ago

Add a note on non-close existence

github.com/Blosc/python-blosc2 - 366ccd4c21b4fb42a1570892c8ec7ff7710bbaca authored 11 months ago

hdf5_to_cat2: First attempt at passing Blosc2 chunks as they are

github.com/ironArray/Caterva2 - c8b07c2a6510978bd3c82f41549e2bc9f22270df authored 11 months ago

hdf5_to_cat2: Minor changes to loop variables and error messages

github.com/ironArray/Caterva2 - 3b0ca92fab7ce8ee4233e3a37b10002fa2bd8b60 authored 11 months ago

hdf5_to_cat2: Create empty Blosc2 array, insert data chunk by chunk

Source data is still slurped and re-compressed into memory to create the
chunks to be stored.

github.com/ironArray/Caterva2 - ca71e15ddb75a1b2d0b01a07cb5b8a8cca4ec83e authored 11 months ago

New bench with better labels

github.com/Blosc/python-blosc2 - 79d75ffc62da57692e77fdef7d6463a04ba42697 authored 11 months ago

hdf5_to_cat2: Propagate HDF5 chunk shape to Blosc2 array

github.com/ironArray/Caterva2 - 738266cb2ae2cddb7aad6d7f59b5cd57d2c775ac authored 11 months ago

cat2_to_hdf5: Avoid applying compression to scalar datasets

github.com/ironArray/Caterva2 - 7b6bc0fcfcbb62ed41fbf6285efb618f18eec9d8 authored 11 months ago

Make use a more coherent use of `filters` and `filters_meta` in docstrings

github.com/Blosc/c-blosc2 - 2f8f6edca5a013cc5f9283be251e9cf1c7a00845 authored 11 months ago

Change blosc2.c:set_values to always call memcpy if BLOSC_STRICT_ALIGN

github.com/Blosc/c-blosc2 - a4120e720a2651d26bcf15ef3e6b04d4cdd889bd authored 11 months ago

Specs: Fix typo in example dataset creation code

github.com/ironArray/Caterva2 - e74fd489349eef9a91ba57ee6fca90081b7b7732 authored 12 months ago

Merge pull request #24 from Blosc/add-tool-cat2hdf5

Add `cat2export tool` (Caterva to HDF5).

This adds the `caterva2.tools.cat_to_hdf5` a.k.a. `c...

github.com/ironArray/Caterva2 - f1af7e49fbf17db2731dac153984bd4dbdc450d1 authored 12 months ago

Docs: Add text for the `cat2export` example

github.com/ironArray/Caterva2 - 6c5dc89a6816d5bd22b5d42fb4d2e5e801f8406f authored 12 months ago

Docs: Add text for the section on `cat2export`

Missing example subsection.

github.com/ironArray/Caterva2 - 6ea647cbbaeb457900bcd6ec83de4cbf9e5ad8c4 authored 12 months ago

Docs: Fix typo in `cat2import` introduction

github.com/ironArray/Caterva2 - 3a25a3dda7b4a01f8aa13a019a7333d33d3b76c4 authored 12 months ago

Docs: Add skeleton for `cat2export` document

github.com/ironArray/Caterva2 - 936519d22a0ba487e18159238106634c4f69b67d authored 12 months ago

Merge pull request #25 from Blosc/urlpath-fix

Undo root being part of dataset path in clients

github.com/ironArray/Caterva2 - 9960caca52849eee111cae723deb11095238be79 authored 12 months ago

cat2_to_hdf5: Use some default Blosc2 compression parameters

So that exported dataset enjoy some compression instead of being stored
completely decompressed....

github.com/ironArray/Caterva2 - 007ee1de523d8f9e46ce607f1c5416cd0d446a05 authored 12 months ago

Undo root being part of dataset path in clients

github.com/ironArray/Caterva2 - 785200d4bccb65b8c01016a579ad75236f76199e authored 12 months ago

Small changes in import/export tools for PEP8 compliance

github.com/ironArray/Caterva2 - 6f251fadd11c18302f1b91746ecf0efce9377bd4 authored 12 months ago

Small changes in import/export tools to make Qodana happy

github.com/ironArray/Caterva2 - acc31d70c0793b82c1bfdab93496022c4f341743 authored 12 months ago

Warning about data being slurped into memory in import/export tools

github.com/ironArray/Caterva2 - aac88f4a0364bcf467cc9d2df1b5c4adaf57e423 authored 12 months ago

cat2_to_hdf5: Expand module docstring / help message

github.com/ironArray/Caterva2 - f23bcf5d7a30ccd6ff4a4b2a87657618224d50b4 authored 12 months ago

cat2_to_hdf5: Allow exporting plain files (new reader)

github.com/ironArray/Caterva2 - 176f2bcceeb7979bd5f96c76ee709dc019978963 authored 12 months ago

cat2_to_hdf5: Have reader function provide HDF5 dataset name

Since it depends on the kind of dataset exported.

github.com/ironArray/Caterva2 - 47adf5f2f11378f2b1eee380ca2c9ce1e58dc182 authored 12 months ago

Update data on demand figure

github.com/ironArray/Caterva2 - 2b2ce1f7904ab372ca813c593e34b98d9f18947e authored 12 months ago

cat2_to_hdf5: Pass chunkshape to created HDF5 dataset

github.com/ironArray/Caterva2 - 9ee7d283f574e62114462650d272094d807856e3 authored 12 months ago

hdf5_to_cat2: Also report when an attribute has been exported

For consistency with export program.

github.com/ironArray/Caterva2 - 14cb08935c8729c4cea5fef80534003ff2bb064e authored 12 months ago

hdf5_to_cat2: Use type annotations

For consistency with export program.

github.com/ironArray/Caterva2 - 6915a51053e279106589b320eb39803bb4d01f1e authored 12 months ago

hdf5_to_cat2: Fix reading data from scalar datasets

github.com/ironArray/Caterva2 - 8642cfd81143ebf53f151f6e4cc698a2e0efb1f0 authored 12 months ago

cat2_to_hdf5: Copy vlmeta in schunk to avoid segmentation fault

github.com/ironArray/Caterva2 - ddef45803459a0ceb0d1f25e5b995ace571ac9f4 authored 12 months ago

hdf5_to_cat2: Use f-string replacement for showing exceptions

For consistency with export program, and internal consistency too.

github.com/ironArray/Caterva2 - f4adff3eefd949167a13a8815c39c7bf9d5c1ee4 authored 12 months ago

cat2_to_hdf5: Move TODO comment to correct location

github.com/ironArray/Caterva2 - 1b10eb459e911d8180936d0bad972fbffec0f947 authored 12 months ago

cat2_to_hdf5: More readable variable name for new HDF5 dataset name

github.com/ironArray/Caterva2 - bc9097670eb0e5196ba2f6b2710adfe45cb066e4 authored 12 months ago

cat2_to_hdf5: Remove conditional import, Python >= 3.10 is required

github.com/ironArray/Caterva2 - 7763120e310473c63622dd910e1ca9fcf48eed00 authored 12 months ago

cat2_to_hdf5: Factor out reading Blosc2 arrays and frames

github.com/ironArray/Caterva2 - efdb23406254f933144121c61ce28b7bdb8968aa authored 12 months ago

Add figures

github.com/ironArray/Caterva2 - f8b41e3eecc620d3c1a00f0ed2c441f836251335 authored 12 months ago

Post 2.13.2 release actions done

github.com/Blosc/c-blosc2 - fd6ec1fb17f9b93938e907bd57b07858902df969 authored 12 months ago

Getting ready for release 2.13.2

github.com/Blosc/c-blosc2 - ed9002c99a0d2e70984ad01d1bfcff0ca5d45f0d authored 12 months ago

Document global registered filters and codecs

github.com/Blosc/c-blosc2 - e0918a19bf13e31669908f97c8eccb7ff0f4e2e7 authored 12 months ago

rely on __SSSE3__ macro rather that on architecture macros

github.com/Blosc/c-blosc2 - 8c519b428549254a8fc412f845805bbac14cf0a2 authored 12 months ago

cat2_to_hdf5: Really fix reading data from scalar datasets

Plain superchunks (from `.b2frame` files) do not accept `[()]`.

github.com/ironArray/Caterva2 - 1abad796df91c862d2db4bfd1d8d0752b07a3cbe authored 12 months ago

Add several TODOs to import/export tools

github.com/ironArray/Caterva2 - 0e65df3899cf15124a07265de6740f221ee27110 authored 12 months ago

cat2_to_hdf5: Simple exporting of Blosc2 attributes

github.com/ironArray/Caterva2 - efe2da2af07592b7cd5f88114dc481a8aca5c74c authored 12 months ago

cat2_to_hdf5: Fix reading data from scalar datasets

github.com/ironArray/Caterva2 - 983e3d55bcb114a24ce5ddc30106f59f920b2ea4 authored 12 months ago

cat2_to_hdf5: Remove redundant info message

github.com/ironArray/Caterva2 - 5cf86a5c8f589e2cd97498862e53d79d6eafc349 authored 12 months ago

cat2_to_hdf5: Simple exporting of Blosc2 datasets

Still lacking different handling of array/frame/file and exporting attributes.

github.com/ironArray/Caterva2 - d962ac10dadb416fb260d7ff61d139fc60545f22 authored 12 months ago

cat2_to_hdf5: Handle Blosc2 datasets differently from plain files

github.com/ironArray/Caterva2 - 99a7e9f5a490eb5ae56f1a7dd9a80dcccef98661 authored 12 months ago

cat2_to_hdf5: Use type annotations to clarify unobvious arguments

github.com/ironArray/Caterva2 - 1c638a82a74b55dd0243c4a19bc1f879881ce5de authored 12 months ago

cat2_to_hdf5: Use "leaf" concept for arrays, frames and files

Less confusing than "dataset", which may not apply clearly to plain files.

github.com/ironArray/Caterva2 - 43f77b76b4908b57a535c23c0898bdc9226faac5 authored 12 months ago

Add skeleton for cat2_to_hdf5 tool (a.k.a. cat2export)

Together with project configuration for the script. It should mostly rely on
the existing depen...

github.com/ironArray/Caterva2 - 8d8ea450a3b968c05d265451febfeda28b0892d8 authored 12 months ago

cat2_to_hdf5: Open source & destination arguments

Not trivial to open the directory safely without a lot of boilerplate for
closing etc., so lever...

github.com/ironArray/Caterva2 - af6454602721de586a2a556fedcc1b3a4c58f0d5 authored 12 months ago

cat2_to_hdf5: Iterate recursively over root's datasets & directories

No actual conversions yet, but HDF5 groups are created.

github.com/ironArray/Caterva2 - ece6c16d2efabee6ccec516a91b468caf4186469 authored 12 months ago

Fix typo in minimum required Python version

It should be >= 3.10.

github.com/ironArray/Caterva2 - 78e26abfc14cbca436fc2c30ec81d9bd52c1d6bd authored 12 months ago

Merge pull request #23 from Blosc/docs-misc-fixes

Miscellaneous documentation fixes

github.com/ironArray/Caterva2 - a2a088445864e981153034d2b3c005d8f0457a55 authored 12 months ago

Doc: Render contributing mentions to `main` in monospace

github.com/ironArray/Caterva2 - dddbef9876ec56f98de198a33dfc8524788727af authored 12 months ago

Doc: Mention GitHub repository in contributing instructions

github.com/ironArray/Caterva2 - 614b2ec4f8953e29917e70418f995ef8c87d4acd authored 12 months ago

Doc: Enable section navigation in "Utilities" section

By splitting each section out to its own file.

github.com/ironArray/Caterva2 - 85fcf48ad708d5a05071039b4417cad1dbfd8615 authored 12 months ago

Reference: Add intro page for `Dataset` class

There must be some way to avoid listing inherited methods again in the
autosummary without getti...

github.com/ironArray/Caterva2 - 867b3b9a93b706de79116957c261e994a4c1b2da authored 12 months ago

Reference: Rename `<CLASS>_api.rst` to `<CLASS>_class.rst`

When they refer to classes, and for consistency with their titles.

github.com/ironArray/Caterva2 - 54dc3c708b5fc9d5bbde61a696fc051e19e116f9 authored 12 months ago

Reference: Retitle "<CLASS> API" to "<CLASS> class"

They are part of the OO API, not APIs by themselves.

github.com/ironArray/Caterva2 - 66f98bfff59c39b27c123f9bd4272d5fbdb056f5 authored 12 months ago

Reference: Refer to OO API classes via the main module

Instead of the module where they are defined.

github.com/ironArray/Caterva2 - ad9d217a0cb3a653b8246534b33b4e05791f9a37 authored 12 months ago

Tutorials: Link to reference intro pages from API tutorial

github.com/ironArray/Caterva2 - c3a6cf36c89395551f2503a1ef89f5b6f044b413 authored 12 months ago

Tutorials: Use "top level client API" instead of "plain client API"

For consistency with the reference section.

github.com/ironArray/Caterva2 - 682f0f1fbd4b404ae6240f27ff14805cef509eb1 authored 12 months ago

Tutorials: Mention `caterva2.toml` in `cat2cli` tutorial

github.com/ironArray/Caterva2 - d1fa2aca1c10774f28274adbabf64146288015aa authored 12 months ago

Tutorials: Using alt state dir & `caterva2.toml` with tests services

github.com/ironArray/Caterva2 - 32a5771cb53dccfb657cd7cd3ef658fbbf049236 authored 12 months ago

Readme: Remove initial comment about logo inclusion

It did have its internal use to explain why the logo was commented out, but
now it may be rather...

github.com/ironArray/Caterva2 - 1792cce8be375439ae35e497ca581542576d6956 authored 12 months ago

Tests: Add init method to base tests services class, to appease QA

github.com/ironArray/Caterva2 - 9ef63e9c09814432f2eba820bd3b97bd116377f5 authored 12 months ago

hdf5_to_cat2: Use `else` clause in `try` to avoid QA warnings

github.com/ironArray/Caterva2 - 88f44002162a067d2a9377345b01c0017def5ad5 authored 12 months ago

Post 0.1 release actions done

github.com/ironArray/Caterva2 - 96a70815666276078f8e4052546c08a069d3edcb authored 12 months ago

Getting ready for release 0.1 (first public)

github.com/ironArray/Caterva2 - bc2e41a771dacef6517fff5357a1b3f8c4506ea6 authored 12 months ago

Experiment with bootstrap themes

github.com/Blosc/blogsite - 6eedfbf27144016064f9e551266e7d4c840163b2 authored 12 months ago

Add Caterva2 docs

github.com/Blosc/blogsite - 52c77d3f10e11ee3b9e031f6030868d7180345b1 authored 12 months ago

Simplified headline

github.com/ironArray/Caterva2 - 285a1d3ff9d1411fcdcd039d66178901932f2776 authored 12 months ago

Comment out the logo in main README

github.com/ironArray/Caterva2 - 4e500c5a62dcef78aa9fb5b6f60f2f74703093e7 authored 12 months ago

Small adjustments

github.com/ironArray/Caterva2 - f41d001470b101b8ba7ac9e6a9ffb8f27e734620 authored 12 months ago

Small adjustments

github.com/ironArray/Caterva2 - 4d5dad89bf9ce254aeeab996548922537d727407 authored 12 months ago

New Caterva2 logo with title in horizontal

github.com/ironArray/Caterva2 - 39178c09d6d0839ed81fc9e17337059d9553cb84 authored 12 months ago

Better integrate logo with title

github.com/ironArray/Caterva2 - e28e256dbf4a1e57de81bec2ae32a96192d1fbab authored 12 months ago

More fixes for warnings by Qodana

github.com/ironArray/Caterva2 - 42eeedda2c407e0d458a8dd2b92a915ceab12489 authored 12 months ago

More fixes for warnings by Qodana

github.com/ironArray/Caterva2 - 31d64272498bf03bf90cf8056183ef060f523f91 authored 12 months ago

Fixing some issues noted by Qodana

github.com/ironArray/Caterva2 - f9b618a3791747bc8399b8ff294add3d0345988f authored 12 months ago

Quodana does not seem designed for C (yet)

github.com/Blosc/c-blosc2 - f0183767d73073eb41bbf97bf56554c7a55c7dbf authored 12 months ago

Attempt to run Qodana code quality

github.com/ironArray/Caterva2 - 4c856bd2a27c85e3df6d465c6cc4d6e02e238237 authored 12 months ago

Merge pull request #21 from Blosc/docs-readme-refactor

Docs readme refactor

github.com/ironArray/Caterva2 - 9c19a60c56b71f447c53a03b7e3fd71ed993f18d authored 12 months ago

Initialization file for quodana

github.com/Blosc/c-blosc2 - 103e17cb585bf010f957f00cd08157976842f9c8 authored 12 months ago

Add code quality assessment with Qodana

github.com/Blosc/c-blosc2 - 472dc12f2aa47918da53fffc676b7465ac18ec14 authored 12 months ago

Remove printing large arrays in notebooks (use too much RAM)

github.com/Blosc/python-blosc2 - 3dd68a6fad1d1ce8e889bb0695fd4d647645b56b authored 12 months ago

Readme: Remove second list of system potential, redundant with intro

github.com/ironArray/Caterva2 - 4ba506c2505d93e468ba1dbd9c5b34c200f87be5 authored 12 months ago

Readme: More precise wording of subscribers' potential in intro

github.com/ironArray/Caterva2 - 69ffa8ee9c637cf05c511867c562f70abf2f17c3 authored 12 months ago

Readme: Refine and shorten text on test directories

github.com/ironArray/Caterva2 - d46c0d346e100e628d876e2943a1c258e50ceb81 authored 12 months ago

Readme: Move down note on extras installation for readability

github.com/ironArray/Caterva2 - 7677641235ebfa5c32934ff815c5a5e7abb19776 authored 12 months ago

Doc: Include link to tutorials doc section from readme

github.com/ironArray/Caterva2 - 0c0472b3c1e7191124c2970ef3409767d2694c82 authored 12 months ago

Readme: Shorten overlong directory listing in "Quick start"

github.com/ironArray/Caterva2 - b61d11a15a919f44642f4d9bab15bf3bd070dc3e authored 12 months ago

Readme: How to stop services in "Quick start"

github.com/ironArray/Caterva2 - 1ced2374c6a92d169257ae06953aa581ba5ce410 authored 12 months ago

Readme: Squash together service start commands from "Quick start"

github.com/ironArray/Caterva2 - fb7c37b44a9ff875323bc4c44c5023f221fba0f8 authored 12 months ago

Readme: Cut or squash less relevant content from "Quick start"

github.com/ironArray/Caterva2 - 67f06b4143b0ccd2e2aedb78eb42b82ae8da8be3 authored 12 months ago

Readme: Shorten texts about command-line client in "Quick start"

github.com/ironArray/Caterva2 - 2467ac38ac5d2196a9445c4018ddb931641f82f4 authored 12 months ago